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Homology
BLAST of mRNA_E-fasciculatus_F_contig15464.3824.1 vs. uniprot
Match: D7G262_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G262_ECTSI) HSP 1 Score: 51.2 bits (121), Expect = 5.980e-5 Identity = 30/67 (44.78%), Postives = 31/67 (46.27%), Query Frame = 1
Query: 1 FRGDALFSSNACDESGGGVYNDETSKMTFYKRAGLYDNWSKDGNGGAVDNRGDLKFRGAVWATGNRC 201
FRG ALFSSNACDES RG+LKFRGAVWATGNRC
Sbjct: 227 FRGPALFSSNACDESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGELKFRGAVWATGNRC 293
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-08_004880.1 |
| Exons | 5 |
| Model size | 378 |
| Cds size | 378 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15464.3824.1 >prot_E-fasciculatus_F_contig15464.3824.1 ID=prot_E-fasciculatus_F_contig15464.3824.1|Name=mRNA_E-fasciculatus_F_contig15464.3824.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=126bp
FRGDALFSSNACDESGGGVYNDETSKMTFYKRAGLYDNWSKDGNGGAVDN
RGDLKFRGAVWATGNRCAESGGGISTGNGGTTTFYGWVTIQSNDAGTTGG
GMSTYVVGSSPLSKCRCQKRRRLPPS back to topmRNA from alignment at E-fasciculatus_F_contig15464:48..2400+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig15464.3824.1 ID=mRNA_E-fasciculatus_F_contig15464.3824.1|Name=mRNA_E-fasciculatus_F_contig15464.3824.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2353bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15464:48..2400+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCGTGGGGACGCTCTGTTCAGCAGCAACGCGTGCGACGAGAGCGGCGG
CGGAGTGTACAACGATGAAACCTCAAAGATGACGTGAGGTTCTCCGTGAT
CATACAATGTAGTCTGCTGCGGTCTTTTCAGAGGAACAAATGAGCATATG
CGTCTTGACGGTAAAGTTAAGTTTTTTAACGGCGTGCCGAAAGATAACTG
CGCAGTGGGTAGTAATGTGCAGTTGTTTTCGTGAGGAGGATGTTCGACAT
CGAACGTAAGACGCACCTAAGGTAATTGTCGGAGAGATGGCACCCCTGTG
TTAGCGTTCTTTTATAGCGTATTTCTCCACAACCAGGGGGGGGTATGTAC
CACTGCCGAAAAGTGAGGGTTGGAAACATGTCGTCGAGGGCTTTCCTGAG
AGGTATCAGTTGGTGTTCGCACCCTACTAGTTGTGGAGAACTACCGGTAC
GCCAATAAGTAGCACGGGGGTGCCATCTCTCCGCCAAATACGGTATATTA
GAAAACGTGTTACCTCTTGTTTGTATGCCTGCTGACTCCGTCCAAGAAGA
AGAAGCCGCCGCCGAGCCATGAAGAAGAAGTCGATTCTCAGTAGACGAGC
AGCGTTCGCAACCGCAAGAGGTAGTCGATCCATTGCACGTGCTTTGCCGA
CACCGCATGTCGAGTACAGAAGTGCTCGCGCACGCTGCATATGTACACAT
TCGCTATTTTTGTGCATAGGGCGAGGCATCACCGCCCGGAGACCTAGGAC
GGCCGTTTTTTCTCCCGCCAATAATGCTTTTCCACGCCAACGCGCGGACG
GACGTGTTCATACGCACAACGTTGATGGTAATTTTCACAATCACGCGCCA
TTGTGTATGGGTGTAGGTTCTACAAGAGGGCCGGTTTGTACGACAACTGG
AGCAAGGACGGGAACGGTGGCGCCGTGGACAACCGTGGGGACCTCAAGTG
AGAAGAGAACAGAACGAAATAACAGAATTAATGCGGTCGGACTGTTGGAT
TGTACATCGAGACTGCTACACAGCAGCAGGTCGAATAGGGCATAAGGAAG
AAACCCTCGGGTCATTCTTGTTCTTGTGTCTACTGCTGTAGTATCCTATG
CATATTCCGCATCACGGGAAAAATGTGACAGGCTGCTAGGGTAGGTCGCA
TAGGGCTTAAGAAAGAAGAGCACTCGTGGTATTCTTGTTTTCCTACACCG
CGTCACGGGTGTCATGAAAAAAGCATTCCTCTCTGGTGCTTTTAGGAAAG
AGCCAAGCGGCCTGCCTGCTCGTGCGTCCCGGAAAACCCTTTGTCGTGGA
TGGACCACACTCCCTCCCTCCCTCCCTCGTCGGCTCACCTACGGCAAAAA
AACAGCTGGGAATTAACAGCTCCAGCCTTATTCCCGTCTAGATCGATCGA
GGACTAAACAGAAACACTCGCTCGCGCGTGTGCTACATGTATGTGTGCTT
GTTGTGCGTTCGGAACGTTTCAGGTTCAGGGGAGCTGTTTGGGCTACCGG
AAACAGGTGCGCGGAGAGCGGCGGCGGGATCTCAACAGGAAACGGCGGAA
CCACCACGTGAGTTACTGTAGTAAAAGATGACGATTTTTGCTGCGCACCA
TTCACTGTGCTGTGCTGCGAGGTCTTGCTTTGGATTTCTTGGGGAGGGGT
GTGAGGGGTCAAAATCGGAACAATATTTATTTGCATATTTCCGCCAACGA
CAATGTATGTATGTGCACGCTGTATGTATGTATGTATGTATGTCGTAGTA
GGGGGCCGAACGGCGAGCGGCACTTGCGGCTGCTAACACAAAAATTACTG
TTCGTTTCTCGTTCGCGTAATCCTTTTGAGCGTCTCTGTCTCCTCCCCCT
TTCGTCCCCCCCTTGTCCTGTGGAAGCTTGTTTCTCGTTCACGAAGTCTT
GACAATTTCATGCGTCTTTCTGTCTCCGTCCCCCCTCTTCCTCCCCCTCC
CTTGGTTGCTGAAGGTTCTACGGGTGGGTGACGATCCAGTCCAACGACGC
TGGAACGACCGGTGGCGGAATGAGCACGTACGTCGTCGGGTCCAGGTGAG
AAGAGGACATCAACGGCTATCTCACCCAGCAGCGGCTGTCACCGAGATGA
CAATGCTAGTGTTCCTTGTTTTCCCAGTGGTGAGACAGACCTTGGAGGGG
CATCGTCTCCGCCACCCGGATGAAGAAAATAAAACAAGCAACAGCAAGAG
AGCTGCATCAATGTAGAACATGCCACGCTGCTGTTTGTGTTCGTACACTG
CTGTTTGTGTGTGTGTGTATGCTTTTTTTTGCCTCTATGCCGTTTAGGAG
TCAGCCCTCTCTCCAAGTGTCGCTGTCAAAAAAGACGCCGCCTCCCTCCT
TCT back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig15464:48..2400+ >mRNA_E-fasciculatus_F_contig15464.3824.1 ID=mRNA_E-fasciculatus_F_contig15464.3824.1|Name=mRNA_E-fasciculatus_F_contig15464.3824.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=756bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15464:48..2400+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCGTGGGGACGCTCTGTTCAGCAGCAACGCGTGCGACGAGAGCGGCGG
CGGAGTGTACAACGATGAAACCTCAAAGATGACTTCCGTGGGGACGCTCT
GTTCAGCAGCAACGCGTGCGACGAGAGCGGCGGCGGAGTGTACAACGATG
AAACCTCAAAGATGACGTTCTACAAGAGGGCCGGTTTGTACGACAACTGG
AGCAAGGACGGGAACGGTGGCGCCGTGGACAACCGTGGGGACCTCAAGTT
CTACAAGAGGGCCGGTTTGTACGACAACTGGAGCAAGGACGGGAACGGTG
GCGCCGTGGACAACCGTGGGGACCTCAAGTTCAGGGGAGCTGTTTGGGCT
ACCGGAAACAGGTGCGCGGAGAGCGGCGGCGGGATCTCAACAGGAAACGG
CGGAACCACCACGTTCAGGGGAGCTGTTTGGGCTACCGGAAACAGGTGCG
CGGAGAGCGGCGGCGGGATCTCAACAGGAAACGGCGGAACCACCACGTTC
TACGGGTGGGTGACGATCCAGTCCAACGACGCTGGAACGACCGGTGGCGG
AATGAGCACGTACGTCGTCGGGTCCAGGTTCTACGGGTGGGTGACGATCC
AGTCCAACGACGCTGGAACGACCGGTGGCGGAATGAGCACGTACGTCGTC
GGGTCCAGCCCTCTCTCCAAGTGTCGCTGTCAAAAAAGACGCCGCCTCCC
TCCTTCTCCCTCTCTCCAAGTGTCGCTGTCAAAAAAGACGCCGCCTCCCT
CCTTCT back to top
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