mRNA_E-fasciculatus_F_contig1545.3819.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1545.3819.1
Unique NamemRNA_E-fasciculatus_F_contig1545.3819.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1545.3819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1545contigE-fasciculatus_F_contig1545:2094..2420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size328
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928022.6737688-CDS-E-fasciculatus_F_contig1545:2093..24201622928022.6737688-CDS-E-fasciculatus_F_contig1545:2093..2420Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1545 2094..2420 +
1695995792.2507017-CDS-E-fasciculatus_F_contig1545:2093..24201695995792.2507017-CDS-E-fasciculatus_F_contig1545:2093..2420Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1545 2094..2420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1545.3819.1prot_E-fasciculatus_F_contig1545.3819.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1545 2094..2420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1545.3819.1

>prot_E-fasciculatus_F_contig1545.3819.1 ID=prot_E-fasciculatus_F_contig1545.3819.1|Name=mRNA_E-fasciculatus_F_contig1545.3819.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=109bp
SAWPSSPLYPHLRKQQCAVLPNARSRPFVDASRPSVRVNSGQQLQHVQHF
DGSIASAREFTLLHEENRPSCFSFFTGLNVESPRILVLVPCAHPAAESAK
QQTHLLFKP
back to top

mRNA from alignment at E-fasciculatus_F_contig1545:2094..2420+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1545.3819.1 ID=mRNA_E-fasciculatus_F_contig1545.3819.1|Name=mRNA_E-fasciculatus_F_contig1545.3819.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=327bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1545:2094..2420+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCGCCTGGCCCTCGTCCCCATTATACCCACACCTACGGAAGCAGCAGTG
CGCTGTATTGCCCAATGCTCGCAGTCGTCCGTTCGTCGATGCGTCGAGAC
CGTCCGTAAGGGTGAACAGCGGGCAACAACTGCAGCACGTACAGCACTTT
GATGGTAGTATAGCCTCTGCTCGTGAGTTTACCCTCCTTCACGAAGAAAA
CAGACCAAGTTGTTTTTCATTTTTCACTGGCCTCAATGTTGAAAGCCCGA
GGATACTTGTACTTGTACCATGTGCCCACCCAGCAGCAGAGTCGGCGAAA
CAGCAAACCCACCTGCTTTTCAAGCCA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1545:2094..2420+

>mRNA_E-fasciculatus_F_contig1545.3819.1 ID=mRNA_E-fasciculatus_F_contig1545.3819.1|Name=mRNA_E-fasciculatus_F_contig1545.3819.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1545:2094..2420+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCGCCTGGCCCTCGTCCCCATTATACCCACACCTACGGAAGCAGCAGTG
CGCTGTATTGCCCAATGCTCGCAGTCGTCCGTTCGTCGATGCGTCGAGAC
CGTCCGTAAGGGTGAACAGCGGGCAACAACTGCAGCACGTACAGCACTTT
GATGGTAGTATAGCCTCTGCTCGTGAGTTTACCCTCCTTCACGAAGAAAA
CAGACCAAGTTGTTTTTCATTTTTCACTGGCCTCAATGTTGAAAGCCCGA
GGATACTTGTACTTGTACCATGTGCCCACCCAGCAGCAGAGTCGGCGAAA
CAGCAAACCCACCTGCTTTTCAAGCCAAGCGCCTGGCCCTCGTCCCCATT
ATACCCACACCTACGGAAGCAGCAGTGCGCTGTATTGCCCAATGCTCGCA
GTCGTCCGTTCGTCGATGCGTCGAGACCGTCCGTAAGGGTGAACAGCGGG
CAACAACTGCAGCACGTACAGCACTTTGATGGTAGTATAGCCTCTGCTCG
TGAGTTTACCCTCCTTCACGAAGAAAACAGACCAAGTTGTTTTTCATTTT
TCACTGGCCTCAATGTTGAAAGCCCGAGGATACTTGTACTTGTACCATGT
GCCCACCCAGCAGCAGAGTCGGCGAAACAGCAAACCCACCTGCTTTTCAA
GCCA
back to top