mRNA_E-fasciculatus_F_contig15448.3816.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15448.3816.1
Unique NamemRNA_E-fasciculatus_F_contig15448.3816.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15448.3816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15448contigE-fasciculatus_F_contig15448:372..933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size563
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928022.5733514-CDS-E-fasciculatus_F_contig15448:371..7011622928022.5733514-CDS-E-fasciculatus_F_contig15448:371..701Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15448 372..701 +
1695995792.1985717-CDS-E-fasciculatus_F_contig15448:371..7011695995792.1985717-CDS-E-fasciculatus_F_contig15448:371..701Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15448 372..701 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928022.5838811-UTR-E-fasciculatus_F_contig15448:701..9331622928022.5838811-UTR-E-fasciculatus_F_contig15448:701..933Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15448 702..933 +
1695995792.211662-UTR-E-fasciculatus_F_contig15448:701..9331695995792.211662-UTR-E-fasciculatus_F_contig15448:701..933Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15448 702..933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15448.3816.1prot_E-fasciculatus_F_contig15448.3816.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15448 372..701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15448.3816.1

>prot_E-fasciculatus_F_contig15448.3816.1 ID=prot_E-fasciculatus_F_contig15448.3816.1|Name=mRNA_E-fasciculatus_F_contig15448.3816.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=110bp
PILLYNSLPPDGVSVHHARFSRAIFSPPLHADTQSKAPRCASINHTPNTD
DTRHNLGTWEFQGKAWRAHGEPRNLYQGGVAGGDSNTLNVDASNLILPYI
FLSTERRVE*
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mRNA from alignment at E-fasciculatus_F_contig15448:372..933+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15448.3816.1 ID=mRNA_E-fasciculatus_F_contig15448.3816.1|Name=mRNA_E-fasciculatus_F_contig15448.3816.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=562bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15448:372..933+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGATCTTGTTGTACAACTCTCTTCCACCGGACGGAGTGAGTGTTCATCA
TGCCAGGTTCTCTCGAGCGATATTCTCGCCCCCGCTTCACGCCGACACAC
AATCAAAAGCACCTAGGTGCGCGTCAATAAACCACACGCCCAACACGGAT
GACACGCGCCACAACCTGGGAACCTGGGAGTTTCAAGGGAAGGCGTGGCG
CGCTCATGGCGAACCAAGAAACCTATACCAGGGCGGAGTGGCTGGGGGCG
ATTCCAACACATTGAATGTCGATGCTTCCAACTTGATACTTCCGTACATT
TTCCTCTCCACGGAACGAAGGGTGGAGTGAAAGATGCCAAAAGCACCGCA
CTAGACAGGAGCCGGACTTGTTCGCTCGGGGTGGCTAATTACACAAAGAA
AGATGGACGGCGCGCATCGTTGACCTCACGGAACGGCTTCTTGCGGCGAA
GTCAGCCGTCCGGCGGTGTCAACTTTTGTTACACGGGGGTGACCGTACCA
AGCTCTTGAATGATGAGTGCCGATAGGACACCTACTTGTTGGCGCTTAGG
ACTGTTTTCAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15448:372..933+

>mRNA_E-fasciculatus_F_contig15448.3816.1 ID=mRNA_E-fasciculatus_F_contig15448.3816.1|Name=mRNA_E-fasciculatus_F_contig15448.3816.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15448:372..933+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGATCTTGTTGTACAACTCTCTTCCACCGGACGGAGTGAGTGTTCATCA
TGCCAGGTTCTCTCGAGCGATATTCTCGCCCCCGCTTCACGCCGACACAC
AATCAAAAGCACCTAGGTGCGCGTCAATAAACCACACGCCCAACACGGAT
GACACGCGCCACAACCTGGGAACCTGGGAGTTTCAAGGGAAGGCGTGGCG
CGCTCATGGCGAACCAAGAAACCTATACCAGGGCGGAGTGGCTGGGGGCG
ATTCCAACACATTGAATGTCGATGCTTCCAACTTGATACTTCCGTACATT
TTCCTCTCCACGGAACGAAGGGTGGAGTGACCGATCTTGTTGTACAACTC
TCTTCCACCGGACGGAGTGAGTGTTCATCATGCCAGGTTCTCTCGAGCGA
TATTCTCGCCCCCGCTTCACGCCGACACACAATCAAAAGCACCTAGGTGC
GCGTCAATAAACCACACGCCCAACACGGATGACACGCGCCACAACCTGGG
AACCTGGGAGTTTCAAGGGAAGGCGTGGCGCGCTCATGGCGAACCAAGAA
ACCTATACCAGGGCGGAGTGGCTGGGGGCGATTCCAACACATTGAATGTC
GATGCTTCCAACTTGATACTTCCGTACATTTTCCTCTCCACGGAACGAAG
GGTGGAGTGA
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