mRNA_E-fasciculatus_F_contig15445.3814.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15445.3814.1
Unique NamemRNA_E-fasciculatus_F_contig15445.3814.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15445.3814.1 vs. uniprot
Match: D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 6.310e-25
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 GTLPVELARLLDKLDSLSFLDLDRNPWEHPPEAIVAGGLQAVRGYYDAIFMGGTTAVTR 177
            GTLPV+LARLLD+ D L  LDL RNPWEHPPEAIVAGG+QAVRGYYDA+F GGTTAVTR
Sbjct:  482 GTLPVDLARLLDRFDGLVTLDLSRNPWEHPPEAIVAGGVQAVRGYYDAMFKGGTTAVTR 540
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BLAST of mRNA_E-fasciculatus_F_contig15445.3814.1 vs. uniprot
Match: A0A6H5KUH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.860e-24
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 GTLPVELARLLDKLDSLSFLDLDRNPWEHPPEAIVAGGLQAVRGYYDAIFMGGTTAVTR 177
            GTLPV+LARLLD LD LS   + RNPWEHPPEAIV GGLQ VRGYY+A+FMGGTTAVTR
Sbjct:  191 GTLPVDLARLLDMLDGLSSWKVGRNPWEHPPEAIVGGGLQVVRGYYEAMFMGGTTAVTR 249
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BLAST of mRNA_E-fasciculatus_F_contig15445.3814.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 5.580e-24
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 GTLPVELARLLDKLDSLSFLDLDRNPWEHPPEAIVAGGLQAVRGYYDAIFMGGTTAVTR 177
            GTLPV+LARLLD  D L  LDL RNPWEHPPEAIVAGG+QAVRGYY+A+F GGTTAVTR
Sbjct:  389 GTLPVDLARLLDVFDGLRSLDLSRNPWEHPPEAIVAGGVQAVRGYYEAMFKGGTTAVTR 447
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BLAST of mRNA_E-fasciculatus_F_contig15445.3814.1 vs. uniprot
Match: A0A6H5JRW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW5_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.050e-18
Identity = 43/62 (69.35%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 GTLPVELARLLDKLD---SLSFLDLDRNPWEHPPEAIVAGGLQAVRGYYDAIFMGGTTAVTR 177
            GTLPV LA LLD  D   S+  LDL +NPWEHPPEAIV GG+ AVRGY++AIF GGTT VTR
Sbjct:    6 GTLPVALASLLDSFDRLHSVGGLDLSQNPWEHPPEAIVTGGMLAVRGYFEAIFRGGTTVVTR 67
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BLAST of mRNA_E-fasciculatus_F_contig15445.3814.1 vs. uniprot
Match: A0A6H5JQZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ5_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.270e-18
Identity = 42/62 (67.74%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 GTLPVELARLLDKLD---SLSFLDLDRNPWEHPPEAIVAGGLQAVRGYYDAIFMGGTTAVTR 177
            GTLPV LA LLD  D   S+  L+L +NPWEHPPEAIV GG+ AVRGY++AIF GGTT VTR
Sbjct:  172 GTLPVALASLLDSFDRLHSVGGLNLSQNPWEHPPEAIVTGGMLAVRGYFEAIFRGGTTVVTR 233
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BLAST of mRNA_E-fasciculatus_F_contig15445.3814.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.130e-16
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 GTLPVELARLLDKLDSLSFLDLDRNPWEHPPEAIVAGGLQAVRGYYDAIFMGGTTAVTR 177
            GTLPV LA LLD L+ +  L + +NPWE PP+AIV GG+ AVR Y++AI+MGGTTAVTR
Sbjct:  317 GTLPVPLACLLDSLERIYRLSVAQNPWESPPDAIVVGGIPAVRAYFEAIYMGGTTAVTR 375
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BLAST of mRNA_E-fasciculatus_F_contig15445.3814.1 vs. uniprot
Match: A0A6H5JSC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC0_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 6.760e-10
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 GTLPVELARLLDKLDSLSFLDLDRNPWEHPPEAIVAGGLQAVRGYYDAI 147
            GTLPV L  LLD L  +  L L  NPWE+PPEAI AGG+ AVR Y++AI
Sbjct:   31 GTLPVPLVCLLDTLARVRDLGLAHNPWEYPPEAIAAGGIPAVRRYFEAI 79
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15445.3814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FX69_ECTSI6.310e-2583.05LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KUH8_9PHAE3.860e-2479.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX56_ECTSI5.580e-2481.36LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JRW5_9PHAE1.050e-1869.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQZ5_9PHAE4.270e-1867.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJV1_ECTSI1.130e-1664.41LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JSC0_9PHAE6.760e-1061.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15445contigE-fasciculatus_F_contig15445:2710..2887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue8.5e-21
Seed eggNOG ortholog2880.D7FX69
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons1
Model size179
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928022.491523-CDS-E-fasciculatus_F_contig15445:2709..28861622928022.491523-CDS-E-fasciculatus_F_contig15445:2709..2886Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15445 2710..2886 +
1695995792.163698-CDS-E-fasciculatus_F_contig15445:2709..28861695995792.163698-CDS-E-fasciculatus_F_contig15445:2709..2886Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15445 2710..2886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15445.3814.1prot_E-fasciculatus_F_contig15445.3814.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15445 2710..2886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15445.3814.1

>prot_E-fasciculatus_F_contig15445.3814.1 ID=prot_E-fasciculatus_F_contig15445.3814.1|Name=mRNA_E-fasciculatus_F_contig15445.3814.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=59bp
GTLPVELARLLDKLDSLSFLDLDRNPWEHPPEAIVAGGLQAVRGYYDAIF
MGGTTAVTR
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mRNA from alignment at E-fasciculatus_F_contig15445:2710..2887+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15445.3814.1 ID=mRNA_E-fasciculatus_F_contig15445.3814.1|Name=mRNA_E-fasciculatus_F_contig15445.3814.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=178bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15445:2710..2887+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTACACTTCCGGTGGAATTAGCCCGTCTTCTGGACAAGCTTGACAGTCT
TAGTTTTTTGGACCTTGACCGAAACCCGTGGGAGCACCCTCCCGAGGCGA
TCGTGGCGGGTGGCCTGCAGGCGGTGAGGGGCTACTACGACGCCATCTTC
ATGGGCGGAACTACCGCTGTGACCCGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15445:2710..2887+

>mRNA_E-fasciculatus_F_contig15445.3814.1 ID=mRNA_E-fasciculatus_F_contig15445.3814.1|Name=mRNA_E-fasciculatus_F_contig15445.3814.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=354bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15445:2710..2887+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTACACTTCCGGTGGAATTAGCCCGTCTTCTGGACAAGCTTGACAGTCT
TAGTTTTTTGGACCTTGACCGAAACCCGTGGGAGCACCCTCCCGAGGCGA
TCGTGGCGGGTGGCCTGCAGGCGGTGAGGGGCTACTACGACGCCATCTTC
ATGGGCGGAACTACCGCTGTGACCCGAGGTACACTTCCGGTGGAATTAGC
CCGTCTTCTGGACAAGCTTGACAGTCTTAGTTTTTTGGACCTTGACCGAA
ACCCGTGGGAGCACCCTCCCGAGGCGATCGTGGCGGGTGGCCTGCAGGCG
GTGAGGGGCTACTACGACGCCATCTTCATGGGCGGAACTACCGCTGTGAC
CCGA
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