mRNA_E-fasciculatus_F_contig15433.3810.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15433.3810.1
Unique NamemRNA_E-fasciculatus_F_contig15433.3810.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15433.3810.1 vs. uniprot
Match: D8LCM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM0_ECTSI)

HSP 1 Score: 450 bits (1158), Expect = 5.640e-154
Identity = 280/382 (73.30%), Postives = 295/382 (77.23%), Query Frame = 1 
Query:   34 AATAPPHDGPPAPAYPGLNAQHRAPXXXXXXXXXXXXXXXX--------------------TVPAVXXXXXXXXXGGYFPGAPGVDSSAD-PGGNSSRRGKKKEKKEAITEVAHESRKWKWAMFVAGNLISVAVVASEIGELSVCFEENLDEDDDDAPEENASEAYGRLLFILVLGLLVDFVSAVLLSLVYRSPLDIKSVHKIPPGDMRHCGGTCLVHFVAPFSWGLIYLVGGVVSGSYGDNAPCGGGAGGDGMETYLTVSGALMIFFGLGMLALSFVTLMLACXXXXXXXXXXXXXXXXXXXXXXXXCCSRARDAVHKRVMSKSPLFDLAWQVQGVVLSYRAGAVSLGSALLLASSGVLGEVLAAFGSLAPEDIQELVGPI 1116
            AATAPPH G  APAYPGLNAQH AP              XX                    TVPA           GYFP APG DSS+D P G  SRRG K   +EA TEVA ESRKWKWAMFV GNLIS+AVVASEIGEL+VCFEENLDEDDDD PEENAS AYG L+F LVLGLLVDF+SAVLLSLVYRSPLDIKS HKIPPGDMRHCGGTCLVHFVAPFSWGL+Y  GG VS  YGDNAPCGGG GGDG+E+YLT+SGALM  FG GMLALSFVTLM ACXXXXXXXXXXXXXXXXXXX     CCS+ARDAVHKR MSKSP+FDLAWQVQ V+LSYRAGAVSL SA LL SSGV+GEVLAAFGSLAPE+IQELVGPI
Sbjct:   86 AATAPPHGG--APAYPGLNAQHGAPRPPAYQAATTTVLGXXXXXXXXXXXXXXXXXXXXXTTVPAYPGINVQHR--GYFPAAPGADSSSDDPSG--SRRGTKXXXEEAATEVARESRKWKWAMFVLGNLISLAVVASEIGELNVCFEENLDEDDDDTPEENASRAYGGLMFTLVLGLLVDFISAVLLSLVYRSPLDIKSTHKIPPGDMRHCGGTCLVHFVAPFSWGLVYWAGGYVSIMYGDNAPCGGGTGGDGLESYLTISGALMAVFGTGMLALSFVTLMFACXXXXXXXXXXXXXXXXXXXG----CCSKARDAVHKRFMSKSPIFDLAWQVQSVLLSYRAGAVSLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPI 457
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15433.3810.1 vs. uniprot
Match: A0A6H5JS15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS15_9PHAE)

HSP 1 Score: 429 bits (1103), Expect = 1.510e-147
Identity = 253/350 (72.29%), Postives = 272/350 (77.71%), Query Frame = 1 
Query:   70 PAYPGLNAQHRAPXXXXXXXXXXXXXXXXTVPAVXXXXXXXXXGGYFPGAPGVDSSAD-PGGNSSRRGKKKEKKEAITEVAHESRKWKWAMFVAGNLISVAVVASEIGELSVCFEENLDEDDDDAPEENASEAYGRLLFILVLGLLVDFVSAVLLSLVYRSPLDIKSVHKIPPGDMRHCGGTCLVHFVAPFSWGLIYLVGGVVSGSYGDNAPCGGGAGGDGMETYLTVSGALMIFFGLGMLALSFVTLMLACXXXXXXXXXXXXXXXXXXXXXXXXCCSRARDAVHKRVMSKSPLFDLAWQVQGVVLSYRAGAVSLGSALLLASSGVLGEVLAAFGSLAPEDIQELVGPI 1116
            PAYPGLN QHR                                 GYFP APG DSS+D P G  SRRG KK++KEA+TEVAHESR WKWAMFV GNLIS+AVVASEIGELSVCFEEN +EDDDD  EENAS A+G L+  LVL LLVDF+SAVLLSLVYRSPLDIKS HKIPPGDMRHCGGT LVHFVAPF WGL+Y  GG+ S  YGDNAPCGGG GGDGME+YL +SG LMI FG GMLALSFV LMLACXXXXXXXXXXXXXXX         CCSRARDAVHKR+MSKSP+FDLAWQVQ V+LSYRAGAV+L SA LL SSGV+GEVLAAFGSLAPE+IQELVGPI
Sbjct:   23 PAYPGLNVQHR---------------------------------GYFPAAPGADSSSDDPSG--SRRGMKKKEKEAVTEVAHESRSWKWAMFVLGNLISLAVVASEIGELSVCFEENPEEDDDDTLEENASSAFGALMLNLVLSLLVDFISAVLLSLVYRSPLDIKSAHKIPPGDMRHCGGTFLVHFVAPFFWGLVYFTGGIASSMYGDNAPCGGGNGGDGMESYLKISGILMIVFGTGMLALSFVALMLACXXXXXXXXXXXXXXXG--------CCSRARDAVHKRLMSKSPIFDLAWQVQSVLLSYRAGAVNLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPI 329
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15433.3810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCM0_ECTSI5.640e-15473.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS15_9PHAE1.510e-14772.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15433contigE-fasciculatus_F_contig15433:1900..3018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_002380.1
Exons1
Model size1119
Cds size1119
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928021.701415-CDS-E-fasciculatus_F_contig15433:1899..30181622928021.701415-CDS-E-fasciculatus_F_contig15433:1899..3018Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15433 1900..3018 -
1695995791.944528-CDS-E-fasciculatus_F_contig15433:1899..30181695995791.944528-CDS-E-fasciculatus_F_contig15433:1899..3018Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15433 1900..3018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15433.3810.1prot_E-fasciculatus_F_contig15433.3810.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15433 1900..3018 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15433.3810.1

>prot_E-fasciculatus_F_contig15433.3810.1 ID=prot_E-fasciculatus_F_contig15433.3810.1|Name=mRNA_E-fasciculatus_F_contig15433.3810.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=373bp
RPPPPAYPATQAATAPPHDGPPAPAYPGLNAQHRAPPPPPPPPVYQAATT
TTTVPAVAYPGLNVQHGGYFPGAPGVDSSADPGGNSSRRGKKKEKKEAIT
EVAHESRKWKWAMFVAGNLISVAVVASEIGELSVCFEENLDEDDDDAPEE
NASEAYGRLLFILVLGLLVDFVSAVLLSLVYRSPLDIKSVHKIPPGDMRH
CGGTCLVHFVAPFSWGLIYLVGGVVSGSYGDNAPCGGGAGGDGMETYLTV
SGALMIFFGLGMLALSFVTLMLACCSSKSSSSSSSQQPPPAAPPRQGGCC
SRARDAVHKRVMSKSPLFDLAWQVQGVVLSYRAGAVSLGSALLLASSGVL
GEVLAAFGSLAPEDIQELVGPI*
back to top

mRNA from alignment at E-fasciculatus_F_contig15433:1900..3018-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15433.3810.1 ID=mRNA_E-fasciculatus_F_contig15433.3810.1|Name=mRNA_E-fasciculatus_F_contig15433.3810.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1119bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15433:1900..3018- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTCCTCCCCCTCCTGCCTACCCTGCTACCCAGGCCGCAACCGCGCCGCC
CCACGACGGGCCCCCCGCCCCGGCATACCCGGGCCTCAACGCACAGCACC
GTGCCCCCCCTCCTCCTCCTCCTCCTCCTGTTTACCAGGCCGCAACAACC
ACCACCACCGTGCCCGCCGTCGCCTACCCGGGCCTCAACGTACAGCACGG
CGGCTATTTCCCAGGCGCGCCCGGCGTGGACAGCAGCGCCGACCCGGGCG
GTAATAGTAGCCGGCGAGGCAAGAAGAAGGAGAAGAAGGAGGCCATCACC
GAGGTGGCTCATGAGTCGAGGAAGTGGAAGTGGGCCATGTTTGTCGCCGG
AAACCTGATCTCCGTCGCCGTGGTCGCGTCGGAGATCGGGGAGCTGAGTG
TGTGCTTCGAGGAGAACCTGGACGAGGACGACGACGACGCGCCGGAGGAG
AACGCCTCGGAGGCCTACGGGCGCCTCCTCTTCATCCTCGTGCTCGGCCT
CCTCGTGGACTTCGTCTCCGCCGTCCTGCTCTCCCTGGTGTACCGCTCCC
CGCTGGACATCAAGTCCGTCCACAAGATCCCGCCGGGGGACATGCGGCAC
TGCGGCGGCACGTGCCTGGTGCACTTCGTCGCGCCCTTCTCCTGGGGGCT
GATCTACCTTGTCGGCGGCGTCGTGAGCGGGAGCTACGGGGACAATGCTC
CCTGCGGCGGCGGGGCCGGCGGCGACGGGATGGAGACCTACCTGACGGTC
TCCGGCGCCCTGATGATTTTCTTCGGGTTGGGGATGTTGGCCCTCTCCTT
CGTGACGCTCATGTTAGCCTGCTGCTCGTCGAAGTCGTCGTCGTCGAGCT
CTTCTCAGCAGCCGCCCCCCGCCGCCCCCCCCCGCCAAGGGGGCTGCTGC
TCCAGGGCGCGGGACGCGGTGCACAAGAGGGTCATGTCCAAGAGCCCGCT
CTTCGACCTGGCCTGGCAGGTGCAGGGGGTCGTCCTGTCCTACCGGGCCG
GGGCGGTGAGCCTGGGGTCGGCCCTCCTCCTGGCCTCGTCGGGGGTGTTG
GGGGAGGTGCTGGCGGCATTCGGAAGCCTGGCGCCCGAAGACATCCAGGA
GCTCGTTGGGCCAATATAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15433:1900..3018-

>mRNA_E-fasciculatus_F_contig15433.3810.1 ID=mRNA_E-fasciculatus_F_contig15433.3810.1|Name=mRNA_E-fasciculatus_F_contig15433.3810.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2238bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15433:1900..3018- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTCCTCCCCCTCCTGCCTACCCTGCTACCCAGGCCGCAACCGCGCCGCC
CCACGACGGGCCCCCCGCCCCGGCATACCCGGGCCTCAACGCACAGCACC
GTGCCCCCCCTCCTCCTCCTCCTCCTCCTGTTTACCAGGCCGCAACAACC
ACCACCACCGTGCCCGCCGTCGCCTACCCGGGCCTCAACGTACAGCACGG
CGGCTATTTCCCAGGCGCGCCCGGCGTGGACAGCAGCGCCGACCCGGGCG
GTAATAGTAGCCGGCGAGGCAAGAAGAAGGAGAAGAAGGAGGCCATCACC
GAGGTGGCTCATGAGTCGAGGAAGTGGAAGTGGGCCATGTTTGTCGCCGG
AAACCTGATCTCCGTCGCCGTGGTCGCGTCGGAGATCGGGGAGCTGAGTG
TGTGCTTCGAGGAGAACCTGGACGAGGACGACGACGACGCGCCGGAGGAG
AACGCCTCGGAGGCCTACGGGCGCCTCCTCTTCATCCTCGTGCTCGGCCT
CCTCGTGGACTTCGTCTCCGCCGTCCTGCTCTCCCTGGTGTACCGCTCCC
CGCTGGACATCAAGTCCGTCCACAAGATCCCGCCGGGGGACATGCGGCAC
TGCGGCGGCACGTGCCTGGTGCACTTCGTCGCGCCCTTCTCCTGGGGGCT
GATCTACCTTGTCGGCGGCGTCGTGAGCGGGAGCTACGGGGACAATGCTC
CCTGCGGCGGCGGGGCCGGCGGCGACGGGATGGAGACCTACCTGACGGTC
TCCGGCGCCCTGATGATTTTCTTCGGGTTGGGGATGTTGGCCCTCTCCTT
CGTGACGCTCATGTTAGCCTGCTGCTCGTCGAAGTCGTCGTCGTCGAGCT
CTTCTCAGCAGCCGCCCCCCGCCGCCCCCCCCCGCCAAGGGGGCTGCTGC
TCCAGGGCGCGGGACGCGGTGCACAAGAGGGTCATGTCCAAGAGCCCGCT
CTTCGACCTGGCCTGGCAGGTGCAGGGGGTCGTCCTGTCCTACCGGGCCG
GGGCGGTGAGCCTGGGGTCGGCCCTCCTCCTGGCCTCGTCGGGGGTGTTG
GGGGAGGTGCTGGCGGCATTCGGAAGCCTGGCGCCCGAAGACATCCAGGA
GCTCGTTGGGCCAATATAGCGTCCTCCCCCTCCTGCCTACCCTGCTACCC
AGGCCGCAACCGCGCCGCCCCACGACGGGCCCCCCGCCCCGGCATACCCG
GGCCTCAACGCACAGCACCGTGCCCCCCCTCCTCCTCCTCCTCCTCCTGT
TTACCAGGCCGCAACAACCACCACCACCGTGCCCGCCGTCGCCTACCCGG
GCCTCAACGTACAGCACGGCGGCTATTTCCCAGGCGCGCCCGGCGTGGAC
AGCAGCGCCGACCCGGGCGGTAATAGTAGCCGGCGAGGCAAGAAGAAGGA
GAAGAAGGAGGCCATCACCGAGGTGGCTCATGAGTCGAGGAAGTGGAAGT
GGGCCATGTTTGTCGCCGGAAACCTGATCTCCGTCGCCGTGGTCGCGTCG
GAGATCGGGGAGCTGAGTGTGTGCTTCGAGGAGAACCTGGACGAGGACGA
CGACGACGCGCCGGAGGAGAACGCCTCGGAGGCCTACGGGCGCCTCCTCT
TCATCCTCGTGCTCGGCCTCCTCGTGGACTTCGTCTCCGCCGTCCTGCTC
TCCCTGGTGTACCGCTCCCCGCTGGACATCAAGTCCGTCCACAAGATCCC
GCCGGGGGACATGCGGCACTGCGGCGGCACGTGCCTGGTGCACTTCGTCG
CGCCCTTCTCCTGGGGGCTGATCTACCTTGTCGGCGGCGTCGTGAGCGGG
AGCTACGGGGACAATGCTCCCTGCGGCGGCGGGGCCGGCGGCGACGGGAT
GGAGACCTACCTGACGGTCTCCGGCGCCCTGATGATTTTCTTCGGGTTGG
GGATGTTGGCCCTCTCCTTCGTGACGCTCATGTTAGCCTGCTGCTCGTCG
AAGTCGTCGTCGTCGAGCTCTTCTCAGCAGCCGCCCCCCGCCGCCCCCCC
CCGCCAAGGGGGCTGCTGCTCCAGGGCGCGGGACGCGGTGCACAAGAGGG
TCATGTCCAAGAGCCCGCTCTTCGACCTGGCCTGGCAGGTGCAGGGGGTC
GTCCTGTCCTACCGGGCCGGGGCGGTGAGCCTGGGGTCGGCCCTCCTCCT
GGCCTCGTCGGGGGTGTTGGGGGAGGTGCTGGCGGCATTCGGAAGCCTGG
CGCCCGAAGACATCCAGGAGCTCGTTGGGCCAATATAG
back to top