mRNA_E-fasciculatus_F_contig15431.3809.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15431.3809.1
Unique NamemRNA_E-fasciculatus_F_contig15431.3809.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15431.3809.1 vs. uniprot
Match: A0A6H5KMB9_9PHAE (DEAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB9_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 6.740e-41
Identity = 115/130 (88.46%), Postives = 115/130 (88.46%), Query Frame = 1 
Query:  328 GGPIRTLGMMREESARRAQGLGSMYGNHGLGTVKGASFSGGESXXXXXXXXXXXXXXXXXXXXXXXXXXXASGLPSSFLAKGLKGAGGGRDVSLGSSSTTSISSGTPSISTPRARVRSYNENELYGTWFA 717
            GGPIRTLGMMREESARRAQGLGSMYG HG G VKGAS S G  XXXXXXXXXXXXXXXXXXXXXX      SGLPSSFLAKGLKGAGG RDVSLGSSSTTSISSGTPSISTPRARVRS NENELYGTWFA
Sbjct:  311 GGPIRTLGMMREESARRAQGLGSMYGIHGQGAVKGASVSVGAXXXXXXXXXXXXXXXXXXXXXXX------SGLPSSFLAKGLKGAGG-RDVSLGSSSTTSISSGTPSISTPRARVRSCNENELYGTWFA 433
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15431.3809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KMB9_9PHAE6.740e-4188.46DEAD domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15431contigE-fasciculatus_F_contig15431:493..1212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_002760.1
Exons1
Model size720
Cds size720
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928021.6556232-CDS-E-fasciculatus_F_contig15431:492..12121622928021.6556232-CDS-E-fasciculatus_F_contig15431:492..1212Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15431 493..1212 +
1695995791.9358323-CDS-E-fasciculatus_F_contig15431:492..12121695995791.9358323-CDS-E-fasciculatus_F_contig15431:492..1212Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15431 493..1212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15431.3809.1prot_E-fasciculatus_F_contig15431.3809.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15431 493..1212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15431.3809.1

>prot_E-fasciculatus_F_contig15431.3809.1 ID=prot_E-fasciculatus_F_contig15431.3809.1|Name=mRNA_E-fasciculatus_F_contig15431.3809.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=240bp
YSEICEGAEVVDDDDGNAENRAPPGAAAAAAAAAAAAATTDRVAGGRDGR
GRGAPAAPAVACVPRPPRIDTDAATSRGTVIVGGVVVAPPPPASAPGGGG
GGGRKAASAGGPIRTLGMMREESARRAQGLGSMYGNHGLGTVKGASFSGG
ESSSSVTNANTTTGGGGGGGGGGGGGGGGASGLPSSFLAKGLKGAGGGRD
VSLGSSSTTSISSGTPSISTPRARVRSYNENELYGTWFA*
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mRNA from alignment at E-fasciculatus_F_contig15431:493..1212+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15431.3809.1 ID=mRNA_E-fasciculatus_F_contig15431.3809.1|Name=mRNA_E-fasciculatus_F_contig15431.3809.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=720bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15431:493..1212+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACAGCGAGATTTGCGAAGGGGCAGAGGTCGTTGACGACGACGATGGGAA
CGCGGAGAACAGAGCTCCTCCAGGAGCGGCGGCGGCGGCGGCCGCTGCTG
CTGCTGCTGCTGCCACCACCGATCGTGTTGCTGGCGGCCGTGACGGCAGG
GGGCGGGGAGCGCCGGCGGCTCCCGCTGTCGCTTGCGTCCCCCGCCCTCC
ACGAATCGACACCGACGCGGCTACCAGCAGGGGCACCGTGATTGTCGGTG
GAGTCGTCGTCGCCCCCCCGCCCCCGGCATCTGCGCCCGGCGGCGGCGGC
GGCGGCGGTAGGAAGGCGGCCTCGGCGGGGGGTCCGATACGGACGCTGGG
CATGATGCGGGAGGAGTCGGCGCGCAGGGCGCAGGGGCTGGGGTCGATGT
ACGGGAACCACGGGCTGGGCACCGTGAAGGGCGCCAGCTTTAGCGGCGGC
GAGTCGTCGTCGTCGGTGACGAACGCGAACACCACCACCGGCGGCGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGCTTCGGGACTGC
CGTCTTCGTTCTTGGCGAAGGGGCTGAAGGGGGCCGGCGGCGGGAGGGAC
GTTAGCCTGGGCAGCAGCAGCACCACCAGCATCAGCAGCGGCACCCCGAG
CATCAGCACGCCGCGGGCGAGGGTGCGCTCGTACAACGAGAACGAGCTCT
ACGGGACGTGGTTCGCATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15431:493..1212+

>mRNA_E-fasciculatus_F_contig15431.3809.1 ID=mRNA_E-fasciculatus_F_contig15431.3809.1|Name=mRNA_E-fasciculatus_F_contig15431.3809.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1440bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15431:493..1212+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACAGCGAGATTTGCGAAGGGGCAGAGGTCGTTGACGACGACGATGGGAA
CGCGGAGAACAGAGCTCCTCCAGGAGCGGCGGCGGCGGCGGCCGCTGCTG
CTGCTGCTGCTGCCACCACCGATCGTGTTGCTGGCGGCCGTGACGGCAGG
GGGCGGGGAGCGCCGGCGGCTCCCGCTGTCGCTTGCGTCCCCCGCCCTCC
ACGAATCGACACCGACGCGGCTACCAGCAGGGGCACCGTGATTGTCGGTG
GAGTCGTCGTCGCCCCCCCGCCCCCGGCATCTGCGCCCGGCGGCGGCGGC
GGCGGCGGTAGGAAGGCGGCCTCGGCGGGGGGTCCGATACGGACGCTGGG
CATGATGCGGGAGGAGTCGGCGCGCAGGGCGCAGGGGCTGGGGTCGATGT
ACGGGAACCACGGGCTGGGCACCGTGAAGGGCGCCAGCTTTAGCGGCGGC
GAGTCGTCGTCGTCGGTGACGAACGCGAACACCACCACCGGCGGCGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGCTTCGGGACTGC
CGTCTTCGTTCTTGGCGAAGGGGCTGAAGGGGGCCGGCGGCGGGAGGGAC
GTTAGCCTGGGCAGCAGCAGCACCACCAGCATCAGCAGCGGCACCCCGAG
CATCAGCACGCCGCGGGCGAGGGTGCGCTCGTACAACGAGAACGAGCTCT
ACGGGACGTGGTTCGCATGATACAGCGAGATTTGCGAAGGGGCAGAGGTC
GTTGACGACGACGATGGGAACGCGGAGAACAGAGCTCCTCCAGGAGCGGC
GGCGGCGGCGGCCGCTGCTGCTGCTGCTGCTGCCACCACCGATCGTGTTG
CTGGCGGCCGTGACGGCAGGGGGCGGGGAGCGCCGGCGGCTCCCGCTGTC
GCTTGCGTCCCCCGCCCTCCACGAATCGACACCGACGCGGCTACCAGCAG
GGGCACCGTGATTGTCGGTGGAGTCGTCGTCGCCCCCCCGCCCCCGGCAT
CTGCGCCCGGCGGCGGCGGCGGCGGCGGTAGGAAGGCGGCCTCGGCGGGG
GGTCCGATACGGACGCTGGGCATGATGCGGGAGGAGTCGGCGCGCAGGGC
GCAGGGGCTGGGGTCGATGTACGGGAACCACGGGCTGGGCACCGTGAAGG
GCGCCAGCTTTAGCGGCGGCGAGTCGTCGTCGTCGGTGACGAACGCGAAC
ACCACCACCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGTGCTTCGGGACTGCCGTCTTCGTTCTTGGCGAAGGGGCTGAAGG
GGGCCGGCGGCGGGAGGGACGTTAGCCTGGGCAGCAGCAGCACCACCAGC
ATCAGCAGCGGCACCCCGAGCATCAGCACGCCGCGGGCGAGGGTGCGCTC
GTACAACGAGAACGAGCTCTACGGGACGTGGTTCGCATGA
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