mRNA_E-fasciculatus_F_contig15426.3803.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15426.3803.1
Unique NamemRNA_E-fasciculatus_F_contig15426.3803.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15426.3803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15426contigE-fasciculatus_F_contig15426:487..1955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size231
Cds size135
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15426.3803.1prot_E-fasciculatus_F_contig15426.3803.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15426 531..1903 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928020.7825074-UTR-E-fasciculatus_F_contig15426:486..5301622928020.7825074-UTR-E-fasciculatus_F_contig15426:486..530Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15426 487..530 -
1695995791.614555-UTR-E-fasciculatus_F_contig15426:486..5301695995791.614555-UTR-E-fasciculatus_F_contig15426:486..530Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15426 487..530 -
1622928020.8272324-UTR-E-fasciculatus_F_contig15426:1903..19551622928020.8272324-UTR-E-fasciculatus_F_contig15426:1903..1955Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15426 1904..1955 -
1695995791.6418457-UTR-E-fasciculatus_F_contig15426:1903..19551695995791.6418457-UTR-E-fasciculatus_F_contig15426:1903..1955Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15426 1904..1955 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928020.8009427-CDS-E-fasciculatus_F_contig15426:530..5701622928020.8009427-CDS-E-fasciculatus_F_contig15426:530..570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15426 531..570 -
1695995791.6240928-CDS-E-fasciculatus_F_contig15426:530..5701695995791.6240928-CDS-E-fasciculatus_F_contig15426:530..570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15426 531..570 -
1622928020.8137026-CDS-E-fasciculatus_F_contig15426:1808..19031622928020.8137026-CDS-E-fasciculatus_F_contig15426:1808..1903Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15426 1809..1903 -
1695995791.6330683-CDS-E-fasciculatus_F_contig15426:1808..19031695995791.6330683-CDS-E-fasciculatus_F_contig15426:1808..1903Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15426 1809..1903 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15426.3803.1

>prot_E-fasciculatus_F_contig15426.3803.1 ID=prot_E-fasciculatus_F_contig15426.3803.1|Name=mRNA_E-fasciculatus_F_contig15426.3803.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=45bp
MLSNNPHLRAHFLSRQAKLPGVNNHNDCRSKTVFGLANNAISAI*
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mRNA from alignment at E-fasciculatus_F_contig15426:487..1955-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15426.3803.1 ID=mRNA_E-fasciculatus_F_contig15426.3803.1|Name=mRNA_E-fasciculatus_F_contig15426.3803.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1469bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15426:487..1955- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAAACGAGCGACTCGAAAACAAGCCCCACGCAAAACGAAAACACATGCAT
GCATGCTATCAAACAACCCCCACTTGAGAGCTCATTTTCTCAGCAGACAA
GCAAAATTACCAGGTGTGAATAACCACAATGACTGCAGGTCGAAAACGTC
AAGACGATGTAGTCTCTCAACGACCTCAGCAGGATCCAAAGCCTCAACAG
AAAAATCACCTCCAATCTCGACCCCGTGGTGGCCAGCAAGCAGGACGCCA
GTGGCCAGAGACCATCACCCAAGCGGGTGTCTCACGCCTCCCATACCAAA
GCAGGCCCATCCAACTGCGAAGCATCTACACAGCAAAGGCAGCTGTCGAC
TCCAAGATACAGCTATGCAGCCGTGTCTTGACGCAGCACGCCGTACCTCC
GTTCGAAATAGACGCTCATATATGCGGCGCAATTAAAAATGCGGCTCAAT
TAGCGGCGCATAGAGGTCCTGTGGGCGAAACGACTGATTAAAAGCTTCCC
TCGCTGGATATACAGCAGTCATACTGTGCTTACACAACATAGAGCGGCCC
ACACTACACTAGCACCCTTTAGAGCTTGTGCAACAAATGCCTGGGACCTC
CAACCAAAACAACCTGGCTGCCGGTTAGAAATTAGCGGGAAAGGCATACT
AAAATTAGTATCAGTGGCGATAGCTCAGTTGGCACAGGAGTATAACACCA
GCAGGAAGCAAACAGCCGCGAAACACAGTCACATATGCCGTACAGCAATC
GTGAAATCGTTTTTGTGACGTTATGATGAGCATACATAGCCCTATCACGC
TGCAACCACCAAATGAAGCGTCAACATGTGGCACACTTGAGTAGAACCTG
GAAAGTGTGCATCAGCACTTCGAAACAATACCTAGAAATTGGGTAACAAA
GTCGCCCAAGTCAGGGATATGATACTGTCTTGCCGAAAGACGAACCACGA
GGTTAGAACTCGGGTGGTTTAGTGGGTTCTAAGGGGATTCCTTCATCCAA
AAAGACCCCTTAATTTCTTTACTAGAAACGCACTCAAACTCAGTCACGCG
TTCAGTAAAAAGATGGTTGAAAGCACGAGATTGCACTCAACGCAAATCAA
ACTTCGCCTTGGAAATACGCAGACGATCGTTGTCTGTGTATGGTATATAG
CACGCTACGTGGCTATCACACGCTCAACGTACTACACAAGTCGGAAAAAA
CATGGCTGATAATGACAGCAAGAAAGCACGCAGTATCGCACGCACGCAAT
GCTGTACGAACCTCTCACTAGCCTCAAATCTTGCATCTGAACGACAGTTT
GAATCGCCGCGCTCGCCTTGACATTGGTGAATTGATTCACGGGGTATTGT
CGTCGTAATGGTCAACTCAGGACTCATTCGACAAGGGTTTTTGGACTCGC
AAACAATGCAATCTCTGCTATATAAGGTTGAGACTTTCTCTGTGCAGTGG
CCGCAGCATACACACGCTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15426:487..1955-

>mRNA_E-fasciculatus_F_contig15426.3803.1 ID=mRNA_E-fasciculatus_F_contig15426.3803.1|Name=mRNA_E-fasciculatus_F_contig15426.3803.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=270bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15426:487..1955- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTATCAAACAACCCCCACTTGAGAGCTCATTTTCTCAGCAGACAAGC
AAAATTACCAGGTGTGAATAACCACAATGACTGCAGGTCGAAAACATGCT
ATCAAACAACCCCCACTTGAGAGCTCATTTTCTCAGCAGACAAGCAAAAT
TACCAGGTGTGAATAACCACAATGACTGCAGGTCGAAAACGGTTTTTGGA
CTCGCAAACAATGCAATCTCTGCTATATAAGGTTTTTGGACTCGCAAACA
ATGCAATCTCTGCTATATAA
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