mRNA_E-fasciculatus_F_contig15423.3802.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15423.3802.1
Unique NamemRNA_E-fasciculatus_F_contig15423.3802.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15423.3802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15423contigE-fasciculatus_F_contig15423:2146..2494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size350
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928020.7366436-CDS-E-fasciculatus_F_contig15423:2145..24931622928020.7366436-CDS-E-fasciculatus_F_contig15423:2145..2493Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15423 2146..2493 +
1695995791.604969-CDS-E-fasciculatus_F_contig15423:2145..24931695995791.604969-CDS-E-fasciculatus_F_contig15423:2145..2493Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15423 2146..2493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15423.3802.1prot_E-fasciculatus_F_contig15423.3802.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15423 2146..2493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15423.3802.1

>prot_E-fasciculatus_F_contig15423.3802.1 ID=prot_E-fasciculatus_F_contig15423.3802.1|Name=mRNA_E-fasciculatus_F_contig15423.3802.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=116bp
PPLRKTAFPLQLVMPVFSLPIFVGRCTTRTGLPLCFSQRRSEVLLASSST
LEVYCTAVLPTFVGRCNLDLGTSRLDTRVQRMNNRPPTCVYTQAFVDGIH
RRGGGQGPGDDSLRTK
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mRNA from alignment at E-fasciculatus_F_contig15423:2146..2494+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15423.3802.1 ID=mRNA_E-fasciculatus_F_contig15423.3802.1|Name=mRNA_E-fasciculatus_F_contig15423.3802.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=349bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15423:2146..2494+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTCCCTTGCGGAAAACAGCTTTCCCTCTGCAGCTGGTTATGCCGGTCTT
CTCCCTCCCAATATTTGTCGGTCGTTGCACGACTAGGACGGGACTGCCCC
TCTGCTTCTCGCAGCGTCGGTCGGAGGTCCTCCTTGCCTCCTCCTCAACT
CTCGAGGTATACTGTACTGCGGTATTGCCCACCTTCGTGGGCAGGTGCAA
CCTTGACCTTGGCACGTCTCGTCTCGACACAAGAGTTCAGAGAATGAACA
ACAGACCACCTACTTGTGTCTATACGCAAGCGTTCGTGGATGGAATACAC
CGTCGGGGGGGCGGTCAAGGGCCAGGGGATGACTCTCTGCGGACAAAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15423:2146..2494+

>mRNA_E-fasciculatus_F_contig15423.3802.1 ID=mRNA_E-fasciculatus_F_contig15423.3802.1|Name=mRNA_E-fasciculatus_F_contig15423.3802.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15423:2146..2494+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTCCCTTGCGGAAAACAGCTTTCCCTCTGCAGCTGGTTATGCCGGTCTT
CTCCCTCCCAATATTTGTCGGTCGTTGCACGACTAGGACGGGACTGCCCC
TCTGCTTCTCGCAGCGTCGGTCGGAGGTCCTCCTTGCCTCCTCCTCAACT
CTCGAGGTATACTGTACTGCGGTATTGCCCACCTTCGTGGGCAGGTGCAA
CCTTGACCTTGGCACGTCTCGTCTCGACACAAGAGTTCAGAGAATGAACA
ACAGACCACCTACTTGTGTCTATACGCAAGCGTTCGTGGATGGAATACAC
CGTCGGGGGGGCGGTCAAGGGCCAGGGGATGACTCTCTGCGGACAAAGCC
TCCCTTGCGGAAAACAGCTTTCCCTCTGCAGCTGGTTATGCCGGTCTTCT
CCCTCCCAATATTTGTCGGTCGTTGCACGACTAGGACGGGACTGCCCCTC
TGCTTCTCGCAGCGTCGGTCGGAGGTCCTCCTTGCCTCCTCCTCAACTCT
CGAGGTATACTGTACTGCGGTATTGCCCACCTTCGTGGGCAGGTGCAACC
TTGACCTTGGCACGTCTCGTCTCGACACAAGAGTTCAGAGAATGAACAAC
AGACCACCTACTTGTGTCTATACGCAAGCGTTCGTGGATGGAATACACCG
TCGGGGGGGCGGTCAAGGGCCAGGGGATGACTCTCTGCGGACAAAG
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