mRNA_E-fasciculatus_F_contig10021.38.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10021.38.1
Unique NamemRNA_E-fasciculatus_F_contig10021.38.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10021.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10021contigE-fasciculatus_F_contig10021:1031..1745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size715
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10021.38.1prot_E-fasciculatus_F_contig10021.38.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10021 1051..1506 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.4060786-UTR-E-fasciculatus_F_contig10021:1030..10501622927504.4060786-UTR-E-fasciculatus_F_contig10021:1030..1050Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10021 1031..1050 +
1695995567.144163-UTR-E-fasciculatus_F_contig10021:1030..10501695995567.144163-UTR-E-fasciculatus_F_contig10021:1030..1050Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10021 1031..1050 +
1622927504.4340026-UTR-E-fasciculatus_F_contig10021:1506..17451622927504.4340026-UTR-E-fasciculatus_F_contig10021:1506..1745Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10021 1507..1745 +
1695995567.1666915-UTR-E-fasciculatus_F_contig10021:1506..17451695995567.1666915-UTR-E-fasciculatus_F_contig10021:1506..1745Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10021 1507..1745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.4226978-CDS-E-fasciculatus_F_contig10021:1050..15061622927504.4226978-CDS-E-fasciculatus_F_contig10021:1050..1506Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10021 1051..1506 +
1695995567.156413-CDS-E-fasciculatus_F_contig10021:1050..15061695995567.156413-CDS-E-fasciculatus_F_contig10021:1050..1506Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10021 1051..1506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10021.38.1

>prot_E-fasciculatus_F_contig10021.38.1 ID=prot_E-fasciculatus_F_contig10021.38.1|Name=mRNA_E-fasciculatus_F_contig10021.38.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=152bp
MDTTASPAATTPNTGKGKDLSPFVNRRNPLPRHPPPMPSILKIRAVTAIS
LPVPTTTTGMNVDDSATAVRPPSPWRRQHHMGDLQTSASGLHALHPAHDK
FHVSDVHTPNRRRQPMFLPALATAALRGQLRLALLQRMITVRFRLPSQPP
L*
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mRNA from alignment at E-fasciculatus_F_contig10021:1031..1745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10021.38.1 ID=mRNA_E-fasciculatus_F_contig10021.38.1|Name=mRNA_E-fasciculatus_F_contig10021.38.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=715bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10021:1031..1745+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAACAACAACCATTCCGGTCATGGACACCACAGCAAGTCCAGCAGCAACA
ACACCCAACACGGGCAAAGGCAAAGATCTCTCGCCATTTGTCAACAGGCG
CAACCCGCTGCCTCGACACCCTCCGCCAATGCCGTCAATCCTCAAGATAC
GCGCCGTCACGGCAATCAGTCTTCCAGTTCCAACAACAACAACAGGAATG
AACGTGGATGACTCCGCAACGGCGGTACGCCCTCCGTCCCCGTGGCGCCG
ACAGCACCACATGGGAGACCTGCAAACGTCTGCCTCTGGCTTACATGCAC
TTCACCCAGCGCACGACAAATTCCACGTCAGTGACGTCCATACCCCAAAC
CGTCGCCGACAACCGATGTTTCTACCGGCTCTCGCAACAGCGGCACTTCG
AGGTCAGCTCCGCCTCGCACTACTGCAACGCATGATTACAGTTCGCTTTC
GCCTGCCCAGCCAACCACCACTCTAAGGAACAGGCCCCTTGTGGCGACGA
GGCCTGCTTGAGACTTGAGACGAGGCCGAGAACAGCTATACATGTAGACT
AACACGGGACTGTCAGTTTTGAAGTTGACCTCCAACGACCTCCAATGGCA
AGTCTGCCCAATACCACCTAGAAACCGCGAGCCGCTGTGTGCAACAGCTG
TACAACAGCACTCAAGCCTACATGTAGTGCGCATTCTCTTGGAGGTGCGG
CTTGTCCACCGTCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10021:1031..1745+

>mRNA_E-fasciculatus_F_contig10021.38.1 ID=mRNA_E-fasciculatus_F_contig10021.38.1|Name=mRNA_E-fasciculatus_F_contig10021.38.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=912bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10021:1031..1745+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACACCACAGCAAGTCCAGCAGCAACAACACCCAACACGGGCAAAGG
CAAAGATCTCTCGCCATTTGTCAACAGGCGCAACCCGCTGCCTCGACACC
CTCCGCCAATGCCGTCAATCCTCAAGATACGCGCCGTCACGGCAATCAGT
CTTCCAGTTCCAACAACAACAACAGGAATGAACGTGGATGACTCCGCAAC
GGCGGTACGCCCTCCGTCCCCGTGGCGCCGACAGCACCACATGGGAGACC
TGCAAACGTCTGCCTCTGGCTTACATGCACTTCACCCAGCGCACGACAAA
TTCCACGTCAGTGACGTCCATACCCCAAACCGTCGCCGACAACCGATGTT
TCTACCGGCTCTCGCAACAGCGGCACTTCGAGGTCAGCTCCGCCTCGCAC
TACTGCAACGCATGATTACAGTTCGCTTTCGCCTGCCCAGCCAACCACCA
CTCTAAATGGACACCACAGCAAGTCCAGCAGCAACAACACCCAACACGGG
CAAAGGCAAAGATCTCTCGCCATTTGTCAACAGGCGCAACCCGCTGCCTC
GACACCCTCCGCCAATGCCGTCAATCCTCAAGATACGCGCCGTCACGGCA
ATCAGTCTTCCAGTTCCAACAACAACAACAGGAATGAACGTGGATGACTC
CGCAACGGCGGTACGCCCTCCGTCCCCGTGGCGCCGACAGCACCACATGG
GAGACCTGCAAACGTCTGCCTCTGGCTTACATGCACTTCACCCAGCGCAC
GACAAATTCCACGTCAGTGACGTCCATACCCCAAACCGTCGCCGACAACC
GATGTTTCTACCGGCTCTCGCAACAGCGGCACTTCGAGGTCAGCTCCGCC
TCGCACTACTGCAACGCATGATTACAGTTCGCTTTCGCCTGCCCAGCCAA
CCACCACTCTAA
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