mRNA_E-fasciculatus_F_contig15422.3800.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15422.3800.1
Unique NamemRNA_E-fasciculatus_F_contig15422.3800.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15422.3800.1 vs. uniprot
Match: D8LK62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK62_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.680e-16
Identity = 48/102 (47.06%), Postives = 56/102 (54.90%), Query Frame = 1 
Query:    7 VAEGGEHLQAKAHDEYHQLWGGHGVLRYRRRSVFFGHTASRLRRTYGVPAWALHCSATEAMRDCFRVSPFTG------GAKGRRGGGGRGCGGGGVYLGLPP 294
            +AEGGE L+A AH EYHQLWGG G LRY RRSVFF H        +  PA          ++   R++ F        GA+    GG RGC GGG YLGLPP
Sbjct:    1 MAEGGERLEATAHREYHQLWGGPGALRYHRRSVFFVHV-------FPAPAHMARLHGLFTVQRPRRMATFVACLRSPAGARAGERGGARGCDGGGPYLGLPP 95
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15422.3800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK62_ECTSI1.680e-1647.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15422contigE-fasciculatus_F_contig15422:1474..2129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928020.6125844-CDS-E-fasciculatus_F_contig15422:1473..15921622928020.6125844-CDS-E-fasciculatus_F_contig15422:1473..1592Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15422 1474..1592 -
1695995791.547457-CDS-E-fasciculatus_F_contig15422:1473..15921695995791.547457-CDS-E-fasciculatus_F_contig15422:1473..1592Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15422 1474..1592 -
1622928020.6301599-CDS-E-fasciculatus_F_contig15422:1954..21291622928020.6301599-CDS-E-fasciculatus_F_contig15422:1954..2129Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15422 1955..2129 -
1695995791.5599515-CDS-E-fasciculatus_F_contig15422:1954..21291695995791.5599515-CDS-E-fasciculatus_F_contig15422:1954..2129Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15422 1955..2129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15422.3800.1prot_E-fasciculatus_F_contig15422.3800.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15422 1474..2129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15422.3800.1

>prot_E-fasciculatus_F_contig15422.3800.1 ID=prot_E-fasciculatus_F_contig15422.3800.1|Name=mRNA_E-fasciculatus_F_contig15422.3800.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=98bp
MGVAEGGEHLQAKAHDEYHQLWGGHGVLRYRRRSVFFGHTASRLRRTYGV
PAWALHCSATEAMRDCFRVSPFTGGAKGRRGGGGRGCGGGGVYLGLPP
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mRNA from alignment at E-fasciculatus_F_contig15422:1474..2129-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15422.3800.1 ID=mRNA_E-fasciculatus_F_contig15422.3800.1|Name=mRNA_E-fasciculatus_F_contig15422.3800.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=656bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15422:1474..2129- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCGTGGCCGAGGGAGGCGAGCATCTGCAAGCCAAGGCGCACGACGA
ATATCACCAGCTGTGGGGTGGCCACGGCGTGTTGCGATACCGCCGTCGCA
GCGTCTTCTTTGGCCACACGGCTTCCCGACTACGGCGCACGTATGGCGTG
CCTGCATGGGCTCTCCACTGTTCAGGTCGGTCATTGTCTGTATGTTCTGG
CACCTCCGTTGCTGTATTTGTCGGGTGATTTGGGTGCGAGAGTTGGTCGA
TTTGTTTCGGGCTGTTGCACGCCTCGTCTTCTACAACGCCTATTCTCTTA
CGGTCCCCTCCTCTCCCCTCCTCTCCCCTCATCTCCCTGAACCTACATCA
ACTGGCTTGCTCTGGCGCCTGTTTCGCTTGGCTAGATATCCTATGTTGTG
TGTGACAGCCGTCCGAAGCTGATCGTTGCCTATTTCATGTTGCCGCTGCT
CTTATGCAGGCAAGGGATCTACAAGCACCCGTCGGCGCGCCCTCAAGCCG
CGTGATACCGCTCCCCGCTCCCCGCTTTGCTCGGCAGCGACCGAGGCGAT
GCGCGATTGTTTTCGCGTGTCTCCGTTCACCGGCGGGGCTAAGGGCCGGC
GAGGGGGGGGAGGTCGAGGTTGCGGTGGTGGTGGCGTATACCTCGGGCTT
CCGCCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15422:1474..2129-

>mRNA_E-fasciculatus_F_contig15422.3800.1 ID=mRNA_E-fasciculatus_F_contig15422.3800.1|Name=mRNA_E-fasciculatus_F_contig15422.3800.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=588bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15422:1474..2129- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCGTGGCCGAGGGAGGCGAGCATCTGCAAGCCAAGGCGCACGACGA
ATATCACCAGCTGTGGGGTGGCCACGGCGTGTTGCGATACCGCCGTCGCA
GCGTCTTCTTTGGCCACACGGCTTCCCGACTACGGCGCACGTATGGCGTG
CCTGCATGGGCTCTCCACTGTTCAGATGGGCGTGGCCGAGGGAGGCGAGC
ATCTGCAAGCCAAGGCGCACGACGAATATCACCAGCTGTGGGGTGGCCAC
GGCGTGTTGCGATACCGCCGTCGCAGCGTCTTCTTTGGCCACACGGCTTC
CCGACTACGGCGCACGTATGGCGTGCCTGCATGGGCTCTCCACTGTTCAG
CGACCGAGGCGATGCGCGATTGTTTTCGCGTGTCTCCGTTCACCGGCGGG
GCTAAGGGCCGGCGAGGGGGGGGAGGTCGAGGTTGCGGTGGTGGTGGCGT
ATACCTCGGGCTTCCGCCACGACCGAGGCGATGCGCGATTGTTTTCGCGT
GTCTCCGTTCACCGGCGGGGCTAAGGGCCGGCGAGGGGGGGGAGGTCGAG
GTTGCGGTGGTGGTGGCGTATACCTCGGGCTTCCGCCA
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