mRNA_E-fasciculatus_F_contig1542.3798.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1542.3798.1
Unique NamemRNA_E-fasciculatus_F_contig1542.3798.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1542.3798.1 vs. uniprot
Match: D7FKI1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKI1_ECTSI)

HSP 1 Score: 397 bits (1021), Expect = 1.490e-135
Identity = 214/227 (94.27%), Postives = 219/227 (96.48%), Query Frame = 1
Query:  136 MHVQRPKQESHLGQNNSWLRLDSGCNNYKPALVTRGGAAVSKTQPERSPYDQLKAFLNKRFFLLGAAAMVAAAKVAPSPGTTGGLLSLSVSKAGVSLVFFLVGLAIKLGELAGAALNFRLNLLTQGFSLGVLPAVGVGLSRVLAAGGMHPALADGVLILMCLPTTVNMCVILTQSAEGNTAAAAFNAVLGNLLGVVVTPALLLFLLGRRLDMAPSLLATFKKLGIKV 816
            MHVQRPKQ+SH GQ+N+WLRL SGCN Y PALVTRGGA VSKTQPERSPYDQLKAFLNKRFFLLGAAAMVAAA+V PSPGTTGGLLSLSVSKAGVSLVFFLVGLAIKLGELAGAALNFRLNLLTQ FSLGVLPAVGVGLSRVLAAGG+HPALADGVLILMCLPTTVNMCVILTQSAEGNTAAAAFNAVLGNLLGVVVTPALLL LLGRRLDMAPSLLATFKKLGIKV
Sbjct:    1 MHVQRPKQQSHPGQHNNWLRLGSGCNKYNPALVTRGGADVSKTQPERSPYDQLKAFLNKRFFLLGAAAMVAAARVVPSPGTTGGLLSLSVSKAGVSLVFFLVGLAIKLGELAGAALNFRLNLLTQAFSLGVLPAVGVGLSRVLAAGGVHPALADGVLILMCLPTTVNMCVILTQSAEGNTAAAAFNAVLGNLLGVVVTPALLLLLLGRRLDMAPSLLATFKKLGIKV 227          
BLAST of mRNA_E-fasciculatus_F_contig1542.3798.1 vs. uniprot
Match: A0A835Z827_9STRA (Putative sodium bile acid cotransporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z827_9STRA)

HSP 1 Score: 144 bits (363), Expect = 7.190e-37
Identity = 91/178 (51.12%), Postives = 117/178 (65.73%), Query Frame = 1
Query:  301 FLNKRFFLLGAAAMVAAAKVAPSPGTTGGLL--SLSVSKAGVSLVFFLVGLAIKLGELAGAALNFRLNLLTQGFSLGVLPAVGVGLSRVLAAGGMHPALADGVLILMCLPTTVNMCVILTQSAEGNTAAA--AFNAVLGNLLGVVVTPALLLFLLGRRLDMAPSLLATFKKLGIKVRA 822
            FLN  FF+LG   +V +AK+AP  G TGGLL   L V KA ++ +FFL G   +L +L  AA N RLN L QGF+LG+LP VG+G  + LAA  M P L +GV  +MCLPTT++M V+L+Q+A G  A A  AFNAV GNLLG+VVTPAL+L  L   +     L+ +  +LG KV A
Sbjct:   51 FLNDNFFILGLVGVVTSAKIAPGLGCTGGLLRPELVVGKAAIAAIFFLTGFRTELRDLGYAAKNTRLNALVQGFNLGLLPLVGLGAGKALAALRMSPVLCEGVTAMMCLPTTISMSVVLSQAAGGAAAGAGAAFNAVAGNLLGLVVTPALILTTLPGGVRGEVQLIKSLLQLGSKVVA 228          
BLAST of mRNA_E-fasciculatus_F_contig1542.3798.1 vs. uniprot
Match: A0A8J2SZL0_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZL0_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.140e-32
Identity = 87/195 (44.62%), Postives = 120/195 (61.54%), Query Frame = 1
Query:  232 VTRGGAAVSKTQPERSPYDQLKAFLNKRFFLLGAAAMVAAAKVAPSPGTTGGLLSLSVSKAGVSLVFFLVGLAIKLGELAGAALNFRLNLLTQGFSLGVLPAVGVGLSRVLAAGGMHPALADGVLILMCLPTTVNMCVILTQSAEGNTAAAAFNAVLGNLLGVVVTPALLLFLLGRRLDMAPSLLATFKKLGIKV 816
            V RGG AV     + +P  ++ AF+++ FF+ G  A VA A ++P PG         V K  V+ +F L GL +KL EL  AA N +LN LTQG +L   PA+ + +  VL    +   L DG+L+  CLPTTVNMCV LTQ+++G+ AAA  NAV+GNLLGVVVTPAL+  L+ + + + P+ +   K LG KV
Sbjct:  101 VLRGGGAV-----DTAPVKRITAFVDRNFFVCGMVASVAVAGLSPGPGQA---CEKFVGKYAVATIFVLSGLGLKLSELKKAATNTKLNGLTQGANLIAFPALMLPVISVLRKTSLDGRLLDGLLVTSCLPTTVNMCVALTQASDGDVAAALTNAVIGNLLGVVVTPALVFALMQKSVQLPPASIVA-KSLGAKV 286          
BLAST of mRNA_E-fasciculatus_F_contig1542.3798.1 vs. uniprot
Match: A0A812IHJ9_9DINO (Slc10a7 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812IHJ9_9DINO)

HSP 1 Score: 134 bits (338), Expect = 8.890e-32
Identity = 92/204 (45.10%), Postives = 126/204 (61.76%), Query Frame = 1
Query:  223 PALVTRGGAAVSKTQPERSP--YDQLKAFLNKRFFLLGAAAMVAAAKVAPSPGTTGGLLSLSV-SKAGVSLVFFLVGLAIKLGELAGAALNFRLNLLTQGFSLGVLPAVGVGLSRVLAAGG-MHPALADGVLILMCLPTTVNMCVILTQSAEGNTAAAAFNAVLGNLLGVVVTPALLLFLLGRR--LDMAPSLLATFKKLGIKV 816
            P L      ++S + P   P  Y +L + LN  FFL+G    V  A++APS   + GLL +   S   V+++F L G ++KL E+  AAL+FRLNLLTQ  S+G++P +   L ++   G  +   L DG++I  CLPTTVNMCV+L +SA  NTA A  NA+LGNLLGV VTPALLL  LG R  + + P++    +KLGIKV
Sbjct: 2546 PQLNLLLAVSISISAPSFLPQWYTELGSKLNANFFLVGMLVAVTLARLAPSLAKSHGLLHVDTFSDYAVAVIFLLSGFSLKLSEMQKAALDFRLNLLTQTLSMGLIPLLAYPLVQLAHRGNWLRGQLLDGLMITACLPTTVNMCVLLAKSAGANTAVALTNAILGNLLGVCVTPALLLVTLGTRTSIQLGPAV----RKLGIKV 2745          
BLAST of mRNA_E-fasciculatus_F_contig1542.3798.1 vs. uniprot
Match: A0A1Q9CJF7_SYMMI (Sodium/bile acid cotransporter 7 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CJF7_SYMMI)

HSP 1 Score: 134 bits (336), Expect = 1.650e-31
Identity = 87/179 (48.60%), Postives = 118/179 (65.92%), Query Frame = 1
Query:  292 LKAFLNKRFFLLGAAAMVAAAKVAPSPGTTGGLLSLSV-SKAGVSLVFFLVGLAIKLGELAGAALNFRLNLLTQGFSLGVLPAVGVGLSRVLAAGG-MHPALADGVLILMCLPTTVNMCVILTQSAEGNTAAAAFNAVLGNLLGVVVTPALLLFLLGRR--LDMAPSLLATFKKLGIKV 816
            L++ LN  FFL+G    V  A++APS   + GLL +   S   V+++F L G ++KL E+  AAL+FRLNLLTQ  S+G++P +   L ++   G  +H  L DG++I  CLPTTVNMCV+L +SA  NTA A  NA+LGNLLGV VTPALLL  LG R  + + P++    +KLGIKV
Sbjct: 1926 LRSKLNANFFLVGMLVAVILARLAPSLAKSHGLLHVDTFSDYAVAVIFLLSGFSLKLSEMQKAALDFRLNLLTQTLSMGLIPLLAYPLVQLAHRGAWLHGQLLDGLMITACLPTTVNMCVLLAKSAGANTAVALTNAILGNLLGVCVTPALLLITLGARTSIQLGPAV----QKLGIKV 2100          
BLAST of mRNA_E-fasciculatus_F_contig1542.3798.1 vs. uniprot
Match: A0A812VP77_SYMPI (Slc10a7 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812VP77_SYMPI)

HSP 1 Score: 124 bits (310), Expect = 5.460e-30
Identity = 82/164 (50.00%), Postives = 107/164 (65.24%), Query Frame = 1
Query:  352 AKVAPSPGTTGGLLSL-SVSKAGVSLVFFLVGLAIKLGELAGAALNFRLNLLTQGFSLGVLPAVGVGLSRVLAAGG--MHPALADGVLILMCLPTTVNMCVILTQSAEGNTAAAAFNAVLGNLLGVVVTPALLLFLLGRR--LDMAPSLLATFKKLGIKVRAGQ 828
            A+ APS    GGLL + SVS   V+++F L G ++KL E+  AAL+FRLNLLTQ  SLG++P +   L + L  G   +H  L DG++I  CLPTTVNMCV+L +SA  NTA A  NA+LGNLLGV VTPALLL  LG R  + + P++     K+ + V  GQ
Sbjct:    8 ARTAPSLAMNGGLLHVDSVSDYAVAVIFLLSGFSLKLSEMRAAALDFRLNLLTQMLSLGLIPLLAYPLVQ-LGHGSKWIHGQLLDGLMITACLPTTVNMCVLLAKSAGANTAVALTNAILGNLLGVCVTPALLLLTLGARASIQLGPAVQKLVVKVVVPVLLGQ 170          
BLAST of mRNA_E-fasciculatus_F_contig1542.3798.1 vs. uniprot
Match: A0A7S2SW23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW23_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.620e-29
Identity = 84/167 (50.30%), Postives = 101/167 (60.48%), Query Frame = 1
Query:  337 AMVAAAKVAPSPGTTGGLL--SLSVSKAGVSLVFFLVGLAIKLGELAGAALNFRLNLLTQGFSLGVLPAVGVGLSRVLAAG-----GMHPALADGVLILMCLPTTVNMCVILTQSAEGNTAAAAFNAVLGNLLGVVVTPALLLFLLGRRLDMAPSLLATFKKLGIKV 816
            A V  A + P  G  GG+L   + V    VSL+F L GL + L EL  AALN RLN L QGF+L   PA+  GL ++L        G    L DG+++  C+PTTVNMCV+LTQSA GN A A FNAVLGNLLG+VVTP  +L LL +    A S L   KKL IKV
Sbjct:    2 ASVLVAAMNPGLGAKGGVLRPEMWVDVGAVSLIFVLSGLGLPLKELRSAALNMRLNFLVQGFNLVAAPAIVFGLRQILEPLSNQWLGSTAWLWDGLIVGACVPTTVNMCVVLTQSAGGNVATALFNAVLGNLLGIVVTPLSILLLLNQATSTA-SFLTVLKKLAIKV 167          
BLAST of mRNA_E-fasciculatus_F_contig1542.3798.1 vs. uniprot
Match: A0A8J5XWI7_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XWI7_DIALT)

HSP 1 Score: 122 bits (306), Expect = 1.210e-28
Identity = 83/185 (44.86%), Postives = 113/185 (61.08%), Query Frame = 1
Query:  238 RGGAAVSKTQPERSP--YDQLKAFLNKRFFLLGAAAMVAAAKVAPSPGTTGGLLSL--SVSKAGVSLVFFLVGLAIKLGELAGAALNFRLNLLTQGFSLGVLPAVGVGLSRVLAA--GGMHPALADGVLILMCLPTTVNMCVILTQSAEGNTAAAAFNAVLGNLLGVVVTPALLLFLLGRRLDMA 774
            RG A+   T  ER P   ++ + F+ +  F +G A  VAAA+VAP+ G  GG L L  +V + GV+ +FFL GL I+  ELA AA + RLN   Q  +  + P +   L +++ A    +  AL DG+L+  CLPTTVNMCVI+TQ+A GN A A  NAV  N  GV VTP LLL L+GR +D++
Sbjct:   43 RGRASPCATAGERPPSAVERARTFVGQNTFPIGMALAVAAARVAPALGANGGPLRLDITVGRLGVAAIFFLSGLGIRTSELAQAATSVRLNAFVQLVTFALWPGMTWLLVQLVRAMHAPLSSALLDGLLVTSCLPTTVNMCVIMTQAAGGNVALAITNAVFSNTAGVFVTPLLLLGLMGRTIDVS 227          
BLAST of mRNA_E-fasciculatus_F_contig1542.3798.1 vs. uniprot
Match: A0A7S0NFI1_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0NFI1_9EUKA)

HSP 1 Score: 121 bits (304), Expect = 1.220e-28
Identity = 83/187 (44.39%), Postives = 115/187 (61.50%), Query Frame = 1
Query:  283 YDQLKAFLNKRFFLLGAAAMVAAAKVAPSPGTTGGLL--SLSVSKAGVSLVFFLVGLAIKLGELAGAALNFRLNLLTQGFSLGVLPAVGVGLSRVLAAGGMHPALADGVLILMCLPTTVNMCVILTQSAEGNTAAAAFNAVLGNLLGVVVTPALLLFLLGRRLDMA--PSLLATFKKLGIKVRAGQV 831
            Y  +  FL++R+FL+GAA+ VA A +AP+ G TGG     L+V+      +FFL GL +   ELA AA   R +   QG +L VLP +   ++ +L A  +   L  G+L +  LPTTVNMCV LT+SA GN A A FNAV+GN+LGVVVTP LLL LLG   D++   ++    KK+ + +  GQ+
Sbjct:   25 YRAVTGFLDRRYFLVGAASAVAMAAIAPTIGCTGGFFRPELTVNWGATCGIFFLSGLTLPTSELAAAAFRVREHTAIQGVNLIVLPLIMWSITTLLGAR-ISATLRAGLLAMSALPTTVNMCVALTRSAGGNEALAIFNAVIGNVLGVVVTPPLLLLLLGASADISIVDAMTKLTKKVVVPLVVGQL 210          
BLAST of mRNA_E-fasciculatus_F_contig1542.3798.1 vs. uniprot
Match: A0A6U5I6C1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A6U5I6C1_9EUKA)

HSP 1 Score: 120 bits (301), Expect = 8.850e-28
Identity = 85/218 (38.99%), Postives = 126/218 (57.80%), Query Frame = 1
Query:  193 RLDSGCNNYKPALVTRGGAAVSKTQPERSPYDQLKAFLNKRFFLLGAAAMVAAAKVAPSPGTTGGLL--SLSVSKAGVSLVFFLVGLAIKLGELAGAALNFRLNLLTQGFSLGVLP-AVGVGLSRVLAAGGMHPALADGVLILMCLPTTVNMCVILTQSAEGNTAAAAFNAVLGNLLGVVVTPALLLFLLGRR--LDMAPSLLATFKKLGIKVRAGQV 831
            +  +G  +  P L  RGG   ++     +   +L AFL++RFF++G A  V AA V P  G   G L   +SV  A    +F + GL +   +LA AA   R +L  Q F+L  LP  +   +S +   G ++  L+DG+L++  LPTTVNMCV LT+SA+GN A A FNAVLGNLLG+ V+P LLL ++G+   L  A ++ +  KK+ + +  GQ+
Sbjct:   64 KAPAGLRSGFPPLRLRGGERAARRSRLCAALGELLAFLDRRFFIVGVAVAVTAASVFPGLGLPSGPLRPEVSVRWAAPCAIFLISGLTLPTSQLADAASRVRTHLGLQAFNLCALPLGMFAFVSALSGLGLVNKGLSDGLLVMSALPTTVNMCVALTRSAKGNEAIAIFNAVLGNLLGIFVSPLLLLLMVGQTGALPFADAVASLSKKVLLPLFVGQL 281          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1542.3798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKI1_ECTSI1.490e-13594.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z827_9STRA7.190e-3751.12Putative sodium bile acid cotransporter n=1 Tax=Tr... [more]
A0A8J2SZL0_9STRA1.140e-3244.62Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A812IHJ9_9DINO8.890e-3245.10Slc10a7 protein n=1 Tax=Symbiodinium sp. CCMP2592 ... [more]
A0A1Q9CJF7_SYMMI1.650e-3148.60Sodium/bile acid cotransporter 7 n=1 Tax=Symbiodin... [more]
A0A812VP77_SYMPI5.460e-3050.00Slc10a7 protein n=1 Tax=Symbiodinium pilosum TaxID... [more]
A0A7S2SW23_9STRA3.620e-2950.30Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A8J5XWI7_DIALT1.210e-2844.86Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S0NFI1_9EUKA1.220e-2844.39Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A6U5I6C1_9EUKA8.850e-2838.99Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1542contigE-fasciculatus_F_contig1542:15878..17410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score400.2
Seed ortholog evalue8e-109
Seed eggNOG ortholog2880.D7FKI1
KEGG koko:K14347
KEGG TC2.A.93.1
EggNOG free text desc.symporter activity
EggNOG OGsCOG0385@1,KOG4821@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04147
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPutative sodium bile acid cotransporter
Ec32 orthologEc-12_001980.1
Exons3
Model size846
Cds size846
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1542.3798.1prot_E-fasciculatus_F_contig1542.3798.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1542 15878..17410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928020.4075797-CDS-E-fasciculatus_F_contig1542:15877..162921622928020.4075797-CDS-E-fasciculatus_F_contig1542:15877..16292Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1542 15878..16292 +
1695995791.460606-CDS-E-fasciculatus_F_contig1542:15877..162921695995791.460606-CDS-E-fasciculatus_F_contig1542:15877..16292Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1542 15878..16292 +
1622928020.424441-CDS-E-fasciculatus_F_contig1542:16661..169131622928020.424441-CDS-E-fasciculatus_F_contig1542:16661..16913Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1542 16662..16913 +
1695995791.4772208-CDS-E-fasciculatus_F_contig1542:16661..169131695995791.4772208-CDS-E-fasciculatus_F_contig1542:16661..16913Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1542 16662..16913 +
1622928020.4398727-CDS-E-fasciculatus_F_contig1542:17231..174101622928020.4398727-CDS-E-fasciculatus_F_contig1542:17231..17410Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1542 17232..17410 +
1695995791.4894931-CDS-E-fasciculatus_F_contig1542:17231..174101695995791.4894931-CDS-E-fasciculatus_F_contig1542:17231..17410Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1542 17232..17410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1542.3798.1

>prot_E-fasciculatus_F_contig1542.3798.1 ID=prot_E-fasciculatus_F_contig1542.3798.1|Name=mRNA_E-fasciculatus_F_contig1542.3798.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=282bp
MRVVSSLSCFAAASPLLRSQLPFTTTATSSNDVQQLRNTHLGRPSMHVQR
PKQESHLGQNNSWLRLDSGCNNYKPALVTRGGAAVSKTQPERSPYDQLKA
FLNKRFFLLGAAAMVAAAKVAPSPGTTGGLLSLSVSKAGVSLVFFLVGLA
IKLGELAGAALNFRLNLLTQGFSLGVLPAVGVGLSRVLAAGGMHPALADG
VLILMCLPTTVNMCVILTQSAEGNTAAAAFNAVLGNLLGVVVTPALLLFL
LGRRLDMAPSLLATFKKLGIKVRAGQVWDAV*
back to top

mRNA from alignment at E-fasciculatus_F_contig1542:15878..17410+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1542.3798.1 ID=mRNA_E-fasciculatus_F_contig1542.3798.1|Name=mRNA_E-fasciculatus_F_contig1542.3798.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1533bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1542:15878..17410+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGTGTTGTGTCTTCTCTTTCTTGCTTCGCTGCTGCGAGCCCTCTCTT GCGCTCACAGCTCCCCTTCACGACAACGGCAACATCAAGCAATGACGTAC AGCAGCTCCGCAACACGCATCTTGGTCGCCCATCGATGCATGTCCAGCGT CCTAAGCAGGAGAGCCATCTCGGGCAGAACAACAGCTGGCTCAGGCTGGA TAGTGGCTGCAACAACTACAAACCCGCTCTTGTGACAAGAGGAGGTGCTG CGGTGTCCAAGACCCAGCCTGAAAGGAGTCCGTATGACCAGCTCAAGGCT TTCCTCAACAAGCGGTTCTTTCTGCTAGGGGCGGCGGCGATGGTTGCCGC GGCGAAGGTCGCACCTTCTCCTGGGACCACGGGAGGCTTGCTGTCGCTTT CGGTGTCTAAAGCTGGTGAGGGAGCGTTGGTCAGTCTGGGTAGGGCCAAA CTCTTGAGTCGCCATTTAGAGCGAATGGCAACGAGTACGTATCTCGTTGT CACGAGGACCAACACAGCAGAGGATACCGCCGTGTGTGGTAAGGTATCTA GCAGCAATCGCCAGAGGGAACCATGTCTGCGCGGAGCGATACTGTGGTTA ACGTAGACAAAGAAACTCCGAACGACCTCTACCTTCCACTACGCGAGGGA AAACTCTACACAACACCGTGAAAAACAAATGTCGACGTCGTATGTAGTGT AGCGAAAGCTGACCTCGAGTTCCTACATGACAATATGACTGCTGTTCGTA TGCTCCGCTGCACCCTGCACCTCAAAACTTGCAGGAGTGTCACTGGTCTT CTTCTTGGTTGGTCTCGCCATCAAGCTGGGCGAGCTTGCGGGAGCCGCCC TAAACTTCAGGCTGAACTTGCTAACCCAGGGCTTCTCGTTGGGTGTGCTC CCCGCGGTGGGGGTAGGGCTCTCGCGTGTCCTGGCCGCAGGCGGGATGCA CCCAGCGCTCGCAGATGGCGTGTTGATTTTGATGTGCCTTCCAACGACTG TCAACATGTGCGTGATTTTGACGCAGAGCGCTGAAGGTGGGTGTGTATTG TATGAATCACATTCAAATAGTGCCCCGACCGATGGATACACTAGACATGC CGCGTTGTCTGCAATTTGCTTATCAACGTACCAGCCCATCAGCCCTCTTC TTCTTGCCATTGGGCACGAGTCCTTTCCTGTTGACTCCGTAGCTTCCGTG TTGATCGGAGAGAACCTCCGCGTCAAACATGGTCCCACTGCGGTGCATGA TTTGGGGTTCGTTTCGGTTTCCGGTCCGTAGCTGCGTGATACTTTTCAAC GTGGTTAAACTTCGTAATTTACTCGACTAATTTCTTCATCTTCATCCCGT GCAGGCAACACGGCGGCAGCGGCCTTCAACGCTGTGCTGGGCAACTTGTT GGGGGTCGTAGTCACCCCTGCTCTACTTCTTTTTCTCCTTGGGCGTCGCT TAGACATGGCTCCATCGCTGTTGGCTACGTTCAAAAAGCTAGGAATAAAG GTGCGCGCCGGTCAGGTTTGGGATGCGGTGTAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1542:15878..17410+

>mRNA_E-fasciculatus_F_contig1542.3798.1 ID=mRNA_E-fasciculatus_F_contig1542.3798.1|Name=mRNA_E-fasciculatus_F_contig1542.3798.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1692bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1542:15878..17410+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGTGTTGTGTCTTCTCTTTCTTGCTTCGCTGCTGCGAGCCCTCTCTT
GCGCTCACAGCTCCCCTTCACGACAACGGCAACATCAAGCAATGACGTAC
AGCAGCTCCGCAACACGCATCTTGGTCGCCCATCGATGCATGTCCAGCGT
CCTAAGCAGGAGAGCCATCTCGGGCAGAACAACAGCTGGCTCAGGCTGGA
TAGTGGCTGCAACAACTACAAACCCGCTCTTGTGACAAGAGGAGGTGCTG
CGGTGTCCAAGACCCAGCCTGAAAGGAGTCCGTATGACCAGCTCAAGGCT
TTCCTCAACAAGCGGTTCTTTCTGCTAGGGGCGGCGGCGATGGTTGCCGC
GGCGAAGGTCGCACCTTCTCCTGGGACCACGGGAGGCTTGCTGTCGCTTT
CGGTGTCTAAAGCTGATGCGTGTTGTGTCTTCTCTTTCTTGCTTCGCTGC
TGCGAGCCCTCTCTTGCGCTCACAGCTCCCCTTCACGACAACGGCAACAT
CAAGCAATGACGTACAGCAGCTCCGCAACACGCATCTTGGTCGCCCATCG
ATGCATGTCCAGCGTCCTAAGCAGGAGAGCCATCTCGGGCAGAACAACAG
CTGGCTCAGGCTGGATAGTGGCTGCAACAACTACAAACCCGCTCTTGTGA
CAAGAGGAGGTGCTGCGGTGTCCAAGACCCAGCCTGAAAGGAGTCCGTAT
GACCAGCTCAAGGCTTTCCTCAACAAGCGGTTCTTTCTGCTAGGGGCGGC
GGCGATGGTTGCCGCGGCGAAGGTCGCACCTTCTCCTGGGACCACGGGAG
GCTTGCTGTCGCTTTCGGTGTCTAAAGCTGGAGTGTCACTGGTCTTCTTC
TTGGTTGGTCTCGCCATCAAGCTGGGCGAGCTTGCGGGAGCCGCCCTAAA
CTTCAGGCTGAACTTGCTAACCCAGGGCTTCTCGTTGGGTGTGCTCCCCG
CGGTGGGGGTAGGGCTCTCGCGTGTCCTGGCCGCAGGCGGGATGCACCCA
GCGCTCGCAGATGGCGTGTTGATTTTGATGTGCCTTCCAACGACTGTCAA
CATGTGCGTGATTTTGACGCAGAGCGCTGAAGGAGTGTCACTGGTCTTCT
TCTTGGTTGGTCTCGCCATCAAGCTGGGCGAGCTTGCGGGAGCCGCCCTA
AACTTCAGGCTGAACTTGCTAACCCAGGGCTTCTCGTTGGGTGTGCTCCC
CGCGGTGGGGGTAGGGCTCTCGCGTGTCCTGGCCGCAGGCGGGATGCACC
CAGCGCTCGCAGATGGCGTGTTGATTTTGATGTGCCTTCCAACGACTGTC
AACATGTGCGTGATTTTGACGCAGAGCGCTGAAGGCAACACGGCGGCAGC
GGCCTTCAACGCTGTGCTGGGCAACTTGTTGGGGGTCGTAGTCACCCCTG
CTCTACTTCTTTTTCTCCTTGGGCGTCGCTTAGACATGGCTCCATCGCTG
TTGGCTACGTTCAAAAAGCTAGGAATAAAGGTGCGCGCCGGTCAGGTTTG
GGATGCGGTGTAAGCAACACGGCGGCAGCGGCCTTCAACGCTGTGCTGGG
CAACTTGTTGGGGGTCGTAGTCACCCCTGCTCTACTTCTTTTTCTCCTTG
GGCGTCGCTTAGACATGGCTCCATCGCTGTTGGCTACGTTCAAAAAGCTA
GGAATAAAGGTGCGCGCCGGTCAGGTTTGGGATGCGGTGTAA
back to top