mRNA_E-fasciculatus_F_contig1542.3796.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1542.3796.1
Unique NamemRNA_E-fasciculatus_F_contig1542.3796.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1542.3796.1 vs. uniprot
Match: D7FHV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV7_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 5.190e-53
Identity = 83/96 (86.46%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:    1 MVCAGHTNFSDSPMFSPGPLRKLQGAGDIDCVTFIDQVTRLALCAFEIFLRKRTGSGDEVKPP--GDLASVVLGEDLAVAFPEARVKRVCAGGVLP 282
            MVCAGHTNFSDSP+F+PGPLRKLQGAGDIDCV FIDQVTRLALCA EIFLR+RT SGD  K P  GDL SVVLGEDLAVAFPEARVKRVCAGGV+P
Sbjct:    1 MVCAGHTNFSDSPLFAPGPLRKLQGAGDIDCVIFIDQVTRLALCALEIFLRRRTSSGDAAKTPAPGDLGSVVLGEDLAVAFPEARVKRVCAGGVMP 96
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1542.3796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHV7_ECTSI5.190e-5386.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1542contigE-fasciculatus_F_contig1542:5025..5697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_000590.1
Exons2
Model size282
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928020.0293648-CDS-E-fasciculatus_F_contig1542:5024..51351622928020.0293648-CDS-E-fasciculatus_F_contig1542:5024..5135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1542 5025..5135 +
1695995791.2447734-CDS-E-fasciculatus_F_contig1542:5024..51351695995791.2447734-CDS-E-fasciculatus_F_contig1542:5024..5135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1542 5025..5135 +
1622928020.0864303-CDS-E-fasciculatus_F_contig1542:5526..56971622928020.0864303-CDS-E-fasciculatus_F_contig1542:5526..5697Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1542 5527..5697 +
1695995791.2630625-CDS-E-fasciculatus_F_contig1542:5526..56971695995791.2630625-CDS-E-fasciculatus_F_contig1542:5526..5697Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1542 5527..5697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1542.3796.1prot_E-fasciculatus_F_contig1542.3796.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1542 5025..5697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1542.3796.1

>prot_E-fasciculatus_F_contig1542.3796.1 ID=prot_E-fasciculatus_F_contig1542.3796.1|Name=mRNA_E-fasciculatus_F_contig1542.3796.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=94bp
MVCAGHTNFSDSPMFSPGPLRKLQGAGDIDCVTFIDQVTRLALCAFEIFL
RKRTGSGDEVKPPGDLASVVLGEDLAVAFPEARVKRVCAGGVLP
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mRNA from alignment at E-fasciculatus_F_contig1542:5025..5697+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1542.3796.1 ID=mRNA_E-fasciculatus_F_contig1542.3796.1|Name=mRNA_E-fasciculatus_F_contig1542.3796.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=673bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1542:5025..5697+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTTGTGCAGGCCACACCAACTTTTCGGACTCTCCCATGTTCTCCCC
CGGACCCTTGCGGAAGCTCCAGGGCGCCGGGGACATAGATTGCGTCACGT
TCATCGACCAGGTGAGGCCTGTGTAAACTGGCCACGCAGTGGGTACAGGG
GCGCGTGATCAAGCCCGGCGCTGCCACAGTAGAACGGCTACAGGACCGGT
TGACTGTCGCGAGGGTGGGCTATCTCGACGAGAGCGAAAAAAGTTGCGGC
GGCGCATCTTTTGTTCTTGTTTCTGCCATCGCACTTGTTGACTACTGCCC
TGACTGTTTCGGTCTGAGGTATATTCGCTTCGTCCCCACAGACATGACTT
TTACTCACCTATAACATTTGCTAACACTTTCCCGACGGCCCCTCACGGTA
GTCCAATAGCGGGGCAATGGTATTTGAGCGACGCGCACGCAGAAACACGG
AGGGGTGCCTCAACAAGAGAATTTTCGGTGTGCCCCTCGCCCCTGCTGAC
AGGTGACCCGCCTGGCGCTCTGCGCCTTCGAGATCTTCCTCCGGAAGCGG
ACCGGCTCGGGGGACGAGGTGAAGCCGCCGGGCGATCTAGCGTCCGTGGT
GCTCGGCGAGGACTTGGCCGTTGCCTTTCCCGAGGCGCGGGTGAAGAGAG
TGTGCGCGGGGGGCGTGCTGCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1542:5025..5697+

>mRNA_E-fasciculatus_F_contig1542.3796.1 ID=mRNA_E-fasciculatus_F_contig1542.3796.1|Name=mRNA_E-fasciculatus_F_contig1542.3796.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=564bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1542:5025..5697+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTTGTGCAGGCCACACCAACTTTTCGGACTCTCCCATGTTCTCCCC
CGGACCCTTGCGGAAGCTCCAGGGCGCCGGGGACATAGATTGCGTCACGT
TCATCGACCAGATGGTTTGTGCAGGCCACACCAACTTTTCGGACTCTCCC
ATGTTCTCCCCCGGACCCTTGCGGAAGCTCCAGGGCGCCGGGGACATAGA
TTGCGTCACGTTCATCGACCAGGTGACCCGCCTGGCGCTCTGCGCCTTCG
AGATCTTCCTCCGGAAGCGGACCGGCTCGGGGGACGAGGTGAAGCCGCCG
GGCGATCTAGCGTCCGTGGTGCTCGGCGAGGACTTGGCCGTTGCCTTTCC
CGAGGCGCGGGTGAAGAGAGTGTGCGCGGGGGGCGTGCTGCCCGTGACCC
GCCTGGCGCTCTGCGCCTTCGAGATCTTCCTCCGGAAGCGGACCGGCTCG
GGGGACGAGGTGAAGCCGCCGGGCGATCTAGCGTCCGTGGTGCTCGGCGA
GGACTTGGCCGTTGCCTTTCCCGAGGCGCGGGTGAAGAGAGTGTGCGCGG
GGGGCGTGCTGCCC
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