mRNA_E-fasciculatus_F_contig15412.3794.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15412.3794.1
Unique NamemRNA_E-fasciculatus_F_contig15412.3794.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15412.3794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15412contigE-fasciculatus_F_contig15412:1842..2554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size343
Cds size342
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928019.8375115-CDS-E-fasciculatus_F_contig15412:1841..20631622928019.8375115-CDS-E-fasciculatus_F_contig15412:1841..2063Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15412 1842..2063 -
1695995791.1389635-CDS-E-fasciculatus_F_contig15412:1841..20631695995791.1389635-CDS-E-fasciculatus_F_contig15412:1841..2063Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15412 1842..2063 -
1622928019.8548121-CDS-E-fasciculatus_F_contig15412:2434..25541622928019.8548121-CDS-E-fasciculatus_F_contig15412:2434..2554Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15412 2435..2554 -
1695995791.1499832-CDS-E-fasciculatus_F_contig15412:2434..25541695995791.1499832-CDS-E-fasciculatus_F_contig15412:2434..2554Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15412 2435..2554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15412.3794.1prot_E-fasciculatus_F_contig15412.3794.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15412 1842..2554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15412.3794.1

>prot_E-fasciculatus_F_contig15412.3794.1 ID=prot_E-fasciculatus_F_contig15412.3794.1|Name=mRNA_E-fasciculatus_F_contig15412.3794.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=114bp
MAGRWDEEGGGSGSAQKGTGGGGGNSGSAKSKIRKRFTLKNLRTSKSDAA
AESAAAAAAAAAAAQGAESTARQHRTVNSSSSTDVSSSSLVKPSPYFRRD
DAATDAVAAAANAS
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mRNA from alignment at E-fasciculatus_F_contig15412:1842..2554-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15412.3794.1 ID=mRNA_E-fasciculatus_F_contig15412.3794.1|Name=mRNA_E-fasciculatus_F_contig15412.3794.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=713bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15412:1842..2554- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCGGGAGATGGGACGAGGAGGGTGGCGGTAGTGGCTCGGCCCAGAA
GGGGACCGGCGGCGGCGGCGGCAACAGCGGCAGCGCGAAGTCGAAGATTC
GAAAGCGGTTCACGCTCAAGGTGCACAAAGTAGTTACAATAGTCCCGGCG
GCGTTGGTGGGTGCTTCGGGTAACGCTGTGGAGTGTTCCGGTGGGTGGGA
TGGATCACCGCGCAATAGACGGAACCGTCCTCGATGGCCGGGGAGATTTG
TACCCTTTATGAAGGCGATCCCCACCATCCTTGGAGTCTTTTTTTTTTTT
TTTTGGTTGCGAGGAAAGGAGGGGGTTCTTTACGTAGTGGAGTTTTGGTC
ACGCCCATTCTCCTGACCGCTACCACGTCCTTACATCCAGCCATCCCTGT
CTGTTTGCTTTCTTCCCCCCGACTTTTACCTCGTGATATTCCCCCCCCGG
GTGGTAATTGTCTGTTTTCCACCACGTGAACCAAAACTTAGAATCTGCGA
ACAAGCAAATCGGATGCAGCGGCGGAATCGGCGGCGGCGGCGGCTGCGGC
TGCGGCCGCGGCTCAAGGCGCAGAGAGCACCGCCCGGCAGCACAGAACCG
TCAACAGCAGCAGCTCGACGGACGTTTCCTCGAGCTCGCTCGTCAAGCCC
TCGCCCTATTTCCGACGGGACGATGCCGCCACCGATGCCGTAGCAGCAGC
AGCAAACGCCTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15412:1842..2554-

>mRNA_E-fasciculatus_F_contig15412.3794.1 ID=mRNA_E-fasciculatus_F_contig15412.3794.1|Name=mRNA_E-fasciculatus_F_contig15412.3794.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15412:1842..2554- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCGGGAGATGGGACGAGGAGGGTGGCGGTAGTGGCTCGGCCCAGAA
GGGGACCGGCGGCGGCGGCGGCAACAGCGGCAGCGCGAAGTCGAAGATTC
GAAAGCGGTTCACGCTCAAGATGGCCGGGAGATGGGACGAGGAGGGTGGC
GGTAGTGGCTCGGCCCAGAAGGGGACCGGCGGCGGCGGCGGCAACAGCGG
CAGCGCGAAGTCGAAGATTCGAAAGCGGTTCACGCTCAAGAATCTGCGAA
CAAGCAAATCGGATGCAGCGGCGGAATCGGCGGCGGCGGCGGCTGCGGCT
GCGGCCGCGGCTCAAGGCGCAGAGAGCACCGCCCGGCAGCACAGAACCGT
CAACAGCAGCAGCTCGACGGACGTTTCCTCGAGCTCGCTCGTCAAGCCCT
CGCCCTATTTCCGACGGGACGATGCCGCCACCGATGCCGTAGCAGCAGCA
GCAAACGCCTCCAATCTGCGAACAAGCAAATCGGATGCAGCGGCGGAATC
GGCGGCGGCGGCGGCTGCGGCTGCGGCCGCGGCTCAAGGCGCAGAGAGCA
CCGCCCGGCAGCACAGAACCGTCAACAGCAGCAGCTCGACGGACGTTTCC
TCGAGCTCGCTCGTCAAGCCCTCGCCCTATTTCCGACGGGACGATGCCGC
CACCGATGCCGTAGCAGCAGCAGCAAACGCCTCC
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