mRNA_E-fasciculatus_F_contig15405.3789.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15405.3789.1
Unique NamemRNA_E-fasciculatus_F_contig15405.3789.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15405.3789.1 vs. uniprot
Match: D8LIZ3_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIZ3_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 9.870e-66
Identity = 120/135 (88.89%), Postives = 120/135 (88.89%), Query Frame = 1 
Query:    1 DASGRHRGGSVGGVERPSDARVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSNGDDEDRNSRPQVGLXXXXXXXXXXXKAAIEVEKRV 405
            DA GRHRGGSV GVERPSDA VLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGS GDDEDRNSRPQVGL           KAAIEVEKRV
Sbjct:  598 DAGGRHRGGSVSGVERPSDASVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSKGDDEDRNSRPQVGLGEEEDEEETKCKAAIEVEKRV 732
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BLAST of mRNA_E-fasciculatus_F_contig15405.3789.1 vs. uniprot
Match: A0A6H5KY72_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY72_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 2.940e-62
Identity = 116/135 (85.93%), Postives = 118/135 (87.41%), Query Frame = 1 
Query:    1 DASGRHRGGSVGGVERPSDARVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSNGDDEDRNSRPQVGLXXXXXXXXXXXKAAIEVEKRV 405
            DASGRHR GSVGGVERPSDA VLG PQRAF YFRER+SGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGS GDDEDRN RP+VGL           KAAIEVEKRV
Sbjct:  662 DASGRHRSGSVGGVERPSDASVLGGPQRAFEYFRERYSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSKGDDEDRNDRPEVGLGEEEDEEETKCKAAIEVEKRV 796
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BLAST of mRNA_E-fasciculatus_F_contig15405.3789.1 vs. uniprot
Match: A0A835YZS4_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS4_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.480e-21
Identity = 50/76 (65.79%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:   49 PSDARVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLME 276
            PSD  VL  PQ+AF YFR+R+    A+EENK LL +KY  AK++G RVNQARSTI YLKNTIEQ+RRERA++GLM+
Sbjct:  549 PSDRHVLDQPQQAFAYFRQRYPPGAAIEENKALLQKKYTTAKSVGARVNQARSTITYLKNTIEQIRRERAMEGLMD 624
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BLAST of mRNA_E-fasciculatus_F_contig15405.3789.1 vs. uniprot
Match: A0A7S3YAX2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAX2_HETAK)

HSP 1 Score: 86.7 bits (213), Expect = 1.180e-18
Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:   49 PSDARVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLME 276
            P+D  +L D QRAF +F+ R+ G  A+EENK L+ EKY  AK +GE VN+AR+ I YLK+TIEQ+RRERA++G+M+
Sbjct:    3 PADRALLADAQRAFEHFKGRYPGLRAMEENKSLMKEKYVEAKKLGELVNKARNKINYLKSTIEQIRRERAIEGVMD 78
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BLAST of mRNA_E-fasciculatus_F_contig15405.3789.1 vs. uniprot
Match: A0A7S3K768_9STRA (Kinesin-like protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K768_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.060e-17
Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:   31 VGGV--ERPSDARVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLME 276
            VGGV  +   D R+  DP+ A+ YFRER S   ALE+NK LL EKY++AK +GERVNQ+R +I YLK +IEQ+RRERA++GL E
Sbjct:  543 VGGVPIDISHDDRLRDDPRLAYSYFRERCSSNQALEDNKALLKEKYSQAKTLGERVNQSRQSIAYLKTSIEQLRRERAIEGLHE 626
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BLAST of mRNA_E-fasciculatus_F_contig15405.3789.1 vs. uniprot
Match: A0A7S2WPU3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPU3_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.920e-14
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 1 
Query:   31 VGGVERPSDARVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSNGDDEDRNSRPQ 333
            V GV   +D  V+ D ++AF +FR       A+EENK++L EKY  AK + ERVN  RS+I YLK TIEQ+RRERA++    EG + G   D  D  S  +
Sbjct:   28 VKGVTLSADPTVISDAEKAFQHFRSHCPREEAIEENKRVLKEKYEAAKVLAERVNSTRSSINYLKTTIEQIRRERAME---REGLIDGGEEDQGDEASEEE 125
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BLAST of mRNA_E-fasciculatus_F_contig15405.3789.1 vs. uniprot
Match: A0A7S2FSY4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FSY4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 5.160e-14
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:   28 SVGGVERPSDARVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGL 270
            +V GV    D  VL D Q AF +FR+  +    +E+NK++L EKY  AK + ERVN  R TI YLK TIEQ+RRERA+D +
Sbjct:   59 TVRGVNLTMDPVVLQDAQAAFNHFRDNCARARTIEDNKRVLKEKYNSAKELAERVNATRGTITYLKQTIEQIRRERAMDEM 139
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BLAST of mRNA_E-fasciculatus_F_contig15405.3789.1 vs. uniprot
Match: F0Y7U3_AURAN (Kinesin-like protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7U3_AURAN)

HSP 1 Score: 77.0 bits (188), Expect = 8.480e-14
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   31 VGGVE---RPSDAR-VLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGL 270
            VGGV+    P +A  +  DPQ+A+ YFRER     A+E+NK +L  KY  AK  GERVN +R +I YLK TIEQ+RRERA++G+
Sbjct:  390 VGGVDFSLPPKEAAGIRDDPQKAYAYFRERCRTNGAIEDNKAVLKAKYGEAKMYGERVNSSRKSIAYLKQTIEQLRRERAMEGV 473
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BLAST of mRNA_E-fasciculatus_F_contig15405.3789.1 vs. uniprot
Match: A0A7S4EA65_9STRA (Kinesin-like protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EA65_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.010e-13
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:   55 DARVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEE 279
            DA V  DP+RA+ YFRE+      LE+NK++L EKY  AKA GE+VN  R  I YLK +IE +RRERA++G++ E
Sbjct:  552 DAEVRDDPKRAWLYFREKCRIAHVLEDNKRVLKEKYCEAKACGEKVNATRKAIAYLKQSIEAIRRERAIEGVVNE 626
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BLAST of mRNA_E-fasciculatus_F_contig15405.3789.1 vs. uniprot
Match: A0A7S2RWA0_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RWA0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.040e-11
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:   46 RPSDARVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEG 282
            +P    +L D  RAF YF+E +    ++EENK++L EKYA AK  GE VN AR+ I  LK  IEQ+R + AL  + +EG
Sbjct:   31 KPPPPEILADKPRAFEYFKEVYPKTNSIEENKRVLKEKYALAKQTGEGVNAARNEINRLKKEIEQIRTQAALQEMEDEG 109
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15405.3789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIZ3_ECTSI9.870e-6688.89Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KY72_9PHAE2.940e-6285.93Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A835YZS4_9STRA2.480e-2165.79Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
A0A7S3YAX2_HETAK1.180e-1856.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3K768_9STRA1.060e-1758.33Kinesin-like protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2WPU3_9STRA1.920e-1445.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2FSY4_9STRA5.160e-1450.62Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
F0Y7U3_AURAN8.480e-1452.38Kinesin-like protein n=1 Tax=Aureococcus anophagef... [more]
A0A7S4EA65_9STRA3.010e-1353.33Kinesin-like protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2RWA0_9STRA5.040e-1146.84Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15405contigE-fasciculatus_F_contig15405:160..1713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.5
Seed ortholog evalue7.5e-57
Seed eggNOG ortholog2880.D8LIZ3
Preferred nameKIF6
KEGG koko:K10397
GOsGO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005871,GO:0005875,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKinesin motor domain
Ec32 orthologEc-20_002100.1
Exons3
Model size406
Cds size405
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15405.3789.1prot_E-fasciculatus_F_contig15405.3789.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15405 160..1713 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928018.6231494-CDS-E-fasciculatus_F_contig15405:159..3241622928018.6231494-CDS-E-fasciculatus_F_contig15405:159..324Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15405 160..324 -
1695995790.8206444-CDS-E-fasciculatus_F_contig15405:159..3241695995790.8206444-CDS-E-fasciculatus_F_contig15405:159..324Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15405 160..324 -
1622928018.8941207-CDS-E-fasciculatus_F_contig15405:810..8761622928018.8941207-CDS-E-fasciculatus_F_contig15405:810..876Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15405 811..876 -
1695995790.8330252-CDS-E-fasciculatus_F_contig15405:810..8761695995790.8330252-CDS-E-fasciculatus_F_contig15405:810..876Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15405 811..876 -
1622928019.2273195-CDS-E-fasciculatus_F_contig15405:1539..17131622928019.2273195-CDS-E-fasciculatus_F_contig15405:1539..1713Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15405 1540..1713 -
1695995790.8463912-CDS-E-fasciculatus_F_contig15405:1539..17131695995790.8463912-CDS-E-fasciculatus_F_contig15405:1539..1713Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15405 1540..1713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15405.3789.1

>prot_E-fasciculatus_F_contig15405.3789.1 ID=prot_E-fasciculatus_F_contig15405.3789.1|Name=mRNA_E-fasciculatus_F_contig15405.3789.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=135bp
DASGRHRGGSVGGVERPSDARVLGDPQRAFGYFRERHSGRVALEENKKLL
GEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSN
GDDEDRNSRPQVGLGEDEDEEETKCKAAIEVEKRV
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mRNA from alignment at E-fasciculatus_F_contig15405:160..1713-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15405.3789.1 ID=mRNA_E-fasciculatus_F_contig15405.3789.1|Name=mRNA_E-fasciculatus_F_contig15405.3789.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1554bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15405:160..1713- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGCGAGCGGACGGCATAGGGGTGGTAGCGTCGGTGGAGTGGAGCGCCC
GAGCGATGCCAGGGTGCTCGGAGACCCTCAGAGGGCGTTCGGGTACTTCA
GGGAGAGGCACTCGGGCAGGGTCGCGCTGGAGGAAAACAAGAAGCTGCTC
GGGGAGAAGTATGCCAGGGCGAAGGTACGCTTTCACATCCTGTTTCTGTG
GCGGTGGCTTTATATCTATAGCAGTAGTGAATCATGTTCAGCTTCGAAAA
CACCGCGACAGTTCGACGACACCGCATTGTGAGGTTGTTCAGGTATGCTA
GGCTATATCAAGGGAGCCAGGGGTGGGGTGTGTATGGTGAGGATTGTTCT
CGAGCCAAGATCAGGCGTCAATACGCTACTAATGTTTTCCCCCACAAGTA
GCGAGGAAGGTGGCCTTCTTGGTGACACCTGGCGGATTTTGGCAGACAGA
GGCATCAAAATCTCCCAAGGCACACCAAAATGACTGACTCAGAGGAGAAG
AACTCGGGAGGATAATAATACCATACAGTTTCACGTTGGTTAAAGATGCT
GACTGAGGGAAGGCAAGCGTTGGCTTGCTCGCCGAACCCGTTTCTCTCCT
TCGGCGCCACCACAGGTGGCGTTCTGACAGGGTTGAGCGATACGCCCTCT
TTCCAACGCGCCGAACTTCGTGCTCAATTCAAACCTTGACGTCACCTCTA
AAAGAGGTTGAGCTTTTTGATTCACTCACAGCTCGCTCCTGTTCGGTCGT
ACACTACCCCCCCCTTTAATGTGTGGTCATATTCCGTCCGATGCTTTCGT
GTTGCTGATGCTGCTGCTGCCGGCGGGTACGCTGCAGGCCATGGGTGAGA
GGGTCAACCAGGCCCGGAGCACTATCCAGTACCTGAAAAACACTATCGAA
CAGGTGACAACCCTAACAACCGGCTGGTTGTCAGCGATTCGAGATGTAGT
ACCCTAGGTATTTTTGTCGTGGTGTGCTTCGACTGTTGCAACCAAGTGTC
TCTCCAACAGCCATAAAATGTTCCCACCCCAAGCGGTAGATGACAGTCCG
GTCTGCTATTTGCAGCACGGAAGCCCCTTAACATCGAAATCATCTTGGAA
GGCTGCGTTAATGCATAAGGGCAATATGGTTGGAATACCCAATGTCAGCC
ATTAGGCTCCCCTTGGGTTGGGGCTCCAGAGAGGAGCCTGTAATACGACA
GAGAATCTTCTCTCTGGATGCCAACGTCGGTTCCCCTATGGAACCGTTAC
TGATGCTTTCCACGTCTACACTCGGGGTTCGGTCACATCCGTCACAATAT
CAACTTCTCTGCACCTCCTGACCGCCCACTCCCCCTCTTCCGCAAACCAA
CAACGACCACACCACCCTGAAATGGTTACGGATACTCAGGTCCGACGAGA
GCGAGCTTTGGACGGCCTAATGGAAGAGGGGAGTGTGGGCGGTAGCAATG
GCGATGACGAAGATAGAAATAGCCGGCCGCAGGTAGGCTTGGGCGAAGAC
GAAGACGAGGAAGAGACCAAGTGCAAAGCTGCCATAGAGGTCGAGAAAAG
GGTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15405:160..1713-

>mRNA_E-fasciculatus_F_contig15405.3789.1 ID=mRNA_E-fasciculatus_F_contig15405.3789.1|Name=mRNA_E-fasciculatus_F_contig15405.3789.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=810bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15405:160..1713- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGCGAGCGGACGGCATAGGGGTGGTAGCGTCGGTGGAGTGGAGCGCCC
GAGCGATGCCAGGGTGCTCGGAGACCCTCAGAGGGCGTTCGGGTACTTCA
GGGAGAGGCACTCGGGCAGGGTCGCGCTGGAGGAAAACAAGAAGCTGCTC
GGGGAGAAGTATGCCAGGGCGAAGGACGCGAGCGGACGGCATAGGGGTGG
TAGCGTCGGTGGAGTGGAGCGCCCGAGCGATGCCAGGGTGCTCGGAGACC
CTCAGAGGGCGTTCGGGTACTTCAGGGAGAGGCACTCGGGCAGGGTCGCG
CTGGAGGAAAACAAGAAGCTGCTCGGGGAGAAGTATGCCAGGGCGAAGGC
CATGGGTGAGAGGGTCAACCAGGCCCGGAGCACTATCCAGTACCTGAAAA
ACACTATCGAACAGGCCATGGGTGAGAGGGTCAACCAGGCCCGGAGCACT
ATCCAGTACCTGAAAAACACTATCGAACAGGTCCGACGAGAGCGAGCTTT
GGACGGCCTAATGGAAGAGGGGAGTGTGGGCGGTAGCAATGGCGATGACG
AAGATAGAAATAGCCGGCCGCAGGTAGGCTTGGGCGAAGACGAAGACGAG
GAAGAGACCAAGTGCAAAGCTGCCATAGAGGTCGAGAAAAGGGTCGTCCG
ACGAGAGCGAGCTTTGGACGGCCTAATGGAAGAGGGGAGTGTGGGCGGTA
GCAATGGCGATGACGAAGATAGAAATAGCCGGCCGCAGGTAGGCTTGGGC
GAAGACGAAGACGAGGAAGAGACCAAGTGCAAAGCTGCCATAGAGGTCGA
GAAAAGGGTC
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