mRNA_E-fasciculatus_F_contig15386.3780.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15386.3780.1
Unique NamemRNA_E-fasciculatus_F_contig15386.3780.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15386.3780.1 vs. uniprot
Match: D7G5I1_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I1_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 3.270e-111
Identity = 220/297 (74.07%), Postives = 231/297 (77.78%), Query Frame = 1 
Query:  196 DARARQRGERRGYVQERRGKNKKSVVLRRPTLIDNIPRGSPTESQASSNESWRQALFGGGRSCSPRSGVLQEHDEVGGGSIVDGEQG---EASEAACXXXXXXXXX-AVEGMNVKDLKAKAAELGIPTGGRKGQLKARIKHKLSAARLSSEDPPAAATVAQPETPEVGGEVAQALTDGEAAAVD--EWEGSTSAVVEDSDDALATVGASWDAGTGGQEGEGRSGGDPPSIESGGVVVVDQSEAAREGTGVTPGDDPGPSLVAVAGTPLEEDEVPASGDDDSTGTLSPGTAAARPPED 1068
            + R R RG   G    R G        RRPTLIDNIPRGSPTESQASSNESWRQALFGGGRSCSPRSGV +EHDE+GGG IVD EQG      E AC    XXXXX AVEGMNVKDLKAKA ELGIPTGGRKGQLKARIKHKLSA+R SSE+PPAAAT AQPETP++G EVAQAL DGEA+AVD  E   S SAVVEDSD +  TV ASWDAGTGGQEGEGR+GG  PSIESGG V  DQ+EAAREG G TPGD P PSLVAVA  P EEDEVPASGDDDS G L PG AA RPPED
Sbjct:   21 ETRGRGRGGSEGDTCRRGG----GRTRRRPTLIDNIPRGSPTESQASSNESWRQALFGGGRSCSPRSGVHEEHDEMGGGPIVDDEQGLGLHLGEGACQEEQXXXXXEAVEGMNVKDLKAKAMELGIPTGGRKGQLKARIKHKLSASRPSSEEPPAAATAAQPETPQLGEEVAQALADGEASAVDGSEENASASAVVEDSDTSSVTVSASWDAGTGGQEGEGRNGGARPSIESGGGVT-DQNEAAREGKGTTPGDGPAPSLVAVAAPPAEEDEVPASGDDDSAGPLPPGVAAVRPPED 312
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BLAST of mRNA_E-fasciculatus_F_contig15386.3780.1 vs. uniprot
Match: A0A6H5KU42_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU42_9PHAE)

HSP 1 Score: 319 bits (817), Expect = 2.560e-98
Identity = 190/262 (72.52%), Postives = 201/262 (76.72%), Query Frame = 1 
Query:  292 IDNIPRGSPTESQASSNESWRQALFGGGRSCSPRSGVLQEHDEVGGGSIVDGEQG---EASEAACXXXXXXXXXAVEGMNVKDLKAKAAELGIPTGGRKGQLKARIKHKLSAARLSSEDPPAAATVAQPETPEVGGEVAQALTDGEAAAVDEWEGSTSAVVEDSDDALATVGASWDAGTGGQEGEGRSGGDPPSIESGGVVVVDQSEAAREGTGVTPGDDPGPSLVAVAGTPLEEDEVPASGDDDSTGTLSPGTAAARPPED 1068
            +DNIPRGSPTESQASSNESWRQALFGGGRSCSPR GVLQ+HDE+GG  IVD EQG      E AC         AVE MNVKDLKAKA ELGIPTGGRK QLKARIKHKLSA+R SSE PPAAAT  Q E PEVGGEVAQA+ DG +A VD  +GS SAV +D+D +   VGASWDAGTGGQEGEGRSGG  PS ESGG V  DQS AAREG G TPGD PGPSLVAVA  P EED+VPASG DD  GTL  G AA  PPED
Sbjct:    1 MDNIPRGSPTESQASSNESWRQALFGGGRSCSPRGGVLQQHDEIGGSPIVDDEQGLGLHLGEEACQEEEEEE--AVESMNVKDLKAKATELGIPTGGRKCQLKARIKHKLSASRPSSEVPPAAATTVQSEMPEVGGEVAQAVADGYSA-VDGSQGSASAVAQDADTSPIVVGASWDAGTGGQEGEGRSGGASPSTESGGAVA-DQSGAAREGRGTTPGDGPGPSLVAVAAPPAEEDDVPASGGDDYAGTLPSGVAAVWPPED 258
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15386.3780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5I1_ECTSI3.270e-11174.07SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KU42_9PHAE2.560e-9872.52SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15386contigE-fasciculatus_F_contig15386:5..3016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1068
Cds size1068
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15386.3780.1prot_E-fasciculatus_F_contig15386.3780.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15386 5..3016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928015.4242964-CDS-E-fasciculatus_F_contig15386:4..5201622928015.4242964-CDS-E-fasciculatus_F_contig15386:4..520Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15386 5..520 -
1695995789.724017-CDS-E-fasciculatus_F_contig15386:4..5201695995789.724017-CDS-E-fasciculatus_F_contig15386:4..520Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15386 5..520 -
1622928015.438668-CDS-E-fasciculatus_F_contig15386:1100..13881622928015.438668-CDS-E-fasciculatus_F_contig15386:1100..1388Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15386 1101..1388 -
1695995789.7339003-CDS-E-fasciculatus_F_contig15386:1100..13881695995789.7339003-CDS-E-fasciculatus_F_contig15386:1100..1388Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15386 1101..1388 -
1622928015.453795-CDS-E-fasciculatus_F_contig15386:2267..24071622928015.453795-CDS-E-fasciculatus_F_contig15386:2267..2407Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15386 2268..2407 -
1695995789.7430468-CDS-E-fasciculatus_F_contig15386:2267..24071695995789.7430468-CDS-E-fasciculatus_F_contig15386:2267..2407Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15386 2268..2407 -
1622928015.4705808-CDS-E-fasciculatus_F_contig15386:2892..30161622928015.4705808-CDS-E-fasciculatus_F_contig15386:2892..3016Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15386 2893..3016 -
1695995789.7529862-CDS-E-fasciculatus_F_contig15386:2892..30161695995789.7529862-CDS-E-fasciculatus_F_contig15386:2892..3016Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15386 2893..3016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15386.3780.1

>prot_E-fasciculatus_F_contig15386.3780.1 ID=prot_E-fasciculatus_F_contig15386.3780.1|Name=mRNA_E-fasciculatus_F_contig15386.3780.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=356bp
KAGNSAAVSSEESSSLSPASRVLAMADRVADEEEGSDLDSEDGSDDSIGP
GSMTRGTASGSGDLGDARARQRGERRGYVQERRGKNKKSVVLRRPTLIDN
IPRGSPTESQASSNESWRQALFGGGRSCSPRSGVLQEHDEVGGGSIVDGE
QGEASEAACQEEEEEEEEAVEGMNVKDLKAKAAELGIPTGGRKGQLKARI
KHKLSAARLSSEDPPAAATVAQPETPEVGGEVAQALTDGEAAAVDEWEGS
TSAVVEDSDDALATVGASWDAGTGGQEGEGRSGGDPPSIESGGVVVVDQS
EAAREGTGVTPGDDPGPSLVAVAGTPLEEDEVPASGDDDSTGTLSPGTAA
ARPPED
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mRNA from alignment at E-fasciculatus_F_contig15386:5..3016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15386.3780.1 ID=mRNA_E-fasciculatus_F_contig15386.3780.1|Name=mRNA_E-fasciculatus_F_contig15386.3780.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3012bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15386:5..3016- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGCTGGAAATTCCGCCGCAGTCTCGTCGGAGGAGTCTTCCAGCCTGTC
CCCGGCGTCGCGGGTCCTGGCCATGGCGGACAGGGTAGCCGACGAGGAGG
AGGGTAGTGATCTCGACAGCGAAGGTAAGCGGTTTCGGTAGCGGCTACGG
TTTGAGGAAAAATACGGGAGATAAAGTACAGATTCACAAGAATACGCCCG
TGCAATTGGTCACAGCAGTAGCCTTCGCAGTTTTCTTTTATTTCAAAACC
AAACTGCGTTCTTGAGCCTGTTACCCACAGGGGAGATATCGCTGTGTGCT
GTCTGGGAAACCGTAGACATACAGGTAGCCTTCCGCTGACGCTCTGGATC
CATTGCTAATCTGTCTTAGACTCTTTTCTTAGATAGAGATGAATTCGTTG
TGTCATATTAAGAAAAAAATAATAATAATAATAAACATGTTGGATAAATA
ATGCAATCAGAGAGGGGGTCTGCGTACCCCCTCCCTCTTTTGTTCCTAAA
AAAAAATCATATATCGCGAAGGTAGTCCATTGGCCAACGCTTCGGTCCTT
CCCCCATCCCGACGTGTTTTTAATTTTTGTGTGATTTTTTATCTTCGGGG
GGCACTAAGACGGGAGCGACGACTCCATTGGTCCGGGATCGATGACACGT
GGCACCGCCAGCGGGTCTGGAGACCTGGGCGACGCGCGGGCGAGGCAGAG
GGGGGAGCGAAGGGGCTACGTGCAAGAGAGGAGAGGGAAGAACAAGAAGG
TAGTATGGTGGTCATTTTTTTATTGTCGTCTGCGATAGTTCTGTGTGACT
ACGGATTGGAGCTCCTACATACCCGGCAAGAATGCTGTGAGCTAAGGGGG
CGCTGATTTATGGTACAGTCGTTGACCCGCATGCGCCAGGCCGATTAACC
CGCCCTATACAGGGCACCCTTTTTCATCCAATCTGTAGAACAACTGATTA
GACTATTCCGTCTGTGCCAGCCAACTTTATCCCCCTTATATAGGGCACCC
GCCTTGTATAGCTCGCCTTATAGAGGGCCTACGACTACTGCATTGAACAA
GAAATAAAACATGGTGATATTGCTATTCGCCCCAAGAACGCCGTTGGGCT
ATTGTAACTATAACGTTTTCTTGTCGGCCTAAGGGGGGTGCCATCTCTCC
GCTTCTTACGGTAGTCACCTATTCGATCTTTCCACCACACCGCCCTTGAG
GATTTCTATTTGCACCGCGCCTGAGGGCATGAAAAACTAGATACCATGGT
AGATTCTACGTCACTCCCCCGAGAATCTCATGTTGTTGTTTGTTTGTTTG
TTGTTGTTCTCACGTTAGCTCTGAAAAAAAGAAAGATGGGGAGCCCGGAT
TCTCAAAACCCGGCATACGCGACCCCACGAAGAAACAGAAAATGTATGTC
AACGTTGTGGCTAGGACTCGCTCGACTTGACTCTCCTCCTTTTTTTTTGC
CGGCTGCTGCTCTCTCTGTCCCTGTCTTCGTCTGTCTCTTTCTCTCCCGC
CCTTCCCCTCTCTCAATCCCTATTCCTCTCTCTCCCTTCTCCCAACTTTC
GTTCTTTTTTTTCGTATTCGGCGAACGGATGTACAACAACTGTCCCTCGC
CTGTCGCGCGATAAAAAAAAAAAAAAAGTCCGTCGTTCTCAGACGTCCCA
CACTTATCGACAACATCCCGCGAGGGTCTCCCACTGAGAGCCAGGCGTCG
TCGAACGAGTCTTGGCGGCAAGCTCTCTTCGGAGGCGGCAGGAGCTGCTC
TCCCAGGAGCGGTGTTCTGCAAGAGCATGACGAGGTGGGCGGTGGTTCGA
TCGTAGACGGCGAGCAAGGGGAAGCTTCTGAGGCGGCGTGCCAGGAGGAG
GAGGAGGAAGAGGAGGAGGCTGTGGAGGGCATGAACGTCAAGGATCTTAA
GGCGAAGGCCGCGGAGGTTGGTGTGGGTGTTTCGCTGTCAAGGCGAAGGC
CACGGTGGTGTGGTTGTTTCCCTGTCAAGGCGAAAACCTTGGGGGGTTGG
TTTTTATGGCGTGGGTGTTTGGCTGTTAAGGCGAAGGTCATGGAGGTTGG
TTTTTGGTGGTATTGTTGTTTCCCTGTCAAGGCGAAAGTCATGGAGGTGT
GTGGAGGTTCTGTTGTTAGGGGTGTCGTCACTGTCCAAGACCGGTAACGT
CGGTCGTTAGCTTGCCTGGCCAAGGTGTGCAACGGTAGTGTCATCTTGCA
TGGCAGGCATGGTGACGATGCCCTCATCGACATGGTCCTTCCCGCTCTTG
ACAAGCGGAGAGAGTGTTTAGACGGAAGGGCGCACTCAGCATCCTGGGTC
ATGTTTGCGCCCTTTAGATTTTCTTGGGCTCTCTTTCCATGCTATATTCG
TGTATTGTTGTTAGCTTTTTGTTTTCGTTTTTTTGCTGTTGTCGTTGTTG
TTGTTGCTGCTGCTGGTGTTGTTGTGGTTGTCGTGATTTTCCACTCTTTC
GTGATTGTAGTTCTCACCCCGCCGCCCCTCCCCTCCCCTCTTGCAGCTGG
GCATTCCCACAGGGGGGCGAAAAGGCCAGCTAAAGGCGCGCATAAAGCAC
AAACTGTCTGCCGCGAGGCTCTCCTCCGAAGACCCCCCCGCCGCTGCCAC
TGTAGCCCAGCCGGAAACACCAGAAGTCGGCGGAGAGGTTGCCCAAGCGC
TGACCGATGGAGAGGCTGCTGCTGTTGATGAGTGGGAGGGAAGTACCAGT
GCCGTTGTCGAAGACTCAGACGATGCCCTCGCGACGGTAGGCGCAAGTTG
GGACGCAGGAACCGGTGGGCAAGAGGGCGAAGGAAGGAGCGGCGGCGACC
CGCCGTCGATCGAAAGCGGCGGCGTGGTGGTGGTGGACCAAAGCGAAGCA
GCTCGAGAGGGTACGGGGGTGACACCTGGTGATGACCCCGGTCCAAGCTT
GGTAGCAGTTGCGGGGACCCCGTTGGAAGAAGACGAGGTCCCCGCCTCTG
GTGATGATGATTCTACGGGGACCCTGTCACCCGGCACGGCGGCCGCTCGA
CCGCCGGAGGAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15386:5..3016-

>mRNA_E-fasciculatus_F_contig15386.3780.1 ID=mRNA_E-fasciculatus_F_contig15386.3780.1|Name=mRNA_E-fasciculatus_F_contig15386.3780.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2136bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15386:5..3016- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGCTGGAAATTCCGCCGCAGTCTCGTCGGAGGAGTCTTCCAGCCTGTC
CCCGGCGTCGCGGGTCCTGGCCATGGCGGACAGGGTAGCCGACGAGGAGG
AGGGTAGTGATCTCGACAGCGAAGAAGGCTGGAAATTCCGCCGCAGTCTC
GTCGGAGGAGTCTTCCAGCCTGTCCCCGGCGTCGCGGGTCCTGGCCATGG
CGGACAGGGTAGCCGACGAGGAGGAGGGTAGTGATCTCGACAGCGAAGAC
GGGAGCGACGACTCCATTGGTCCGGGATCGATGACACGTGGCACCGCCAG
CGGGTCTGGAGACCTGGGCGACGCGCGGGCGAGGCAGAGGGGGGAGCGAA
GGGGCTACGTGCAAGAGAGGAGAGGGAAGAACAAGAAGACGGGAGCGACG
ACTCCATTGGTCCGGGATCGATGACACGTGGCACCGCCAGCGGGTCTGGA
GACCTGGGCGACGCGCGGGCGAGGCAGAGGGGGGAGCGAAGGGGCTACGT
GCAAGAGAGGAGAGGGAAGAACAAGAAGTCCGTCGTTCTCAGACGTCCCA
CACTTATCGACAACATCCCGCGAGGGTCTCCCACTGAGAGCCAGGCGTCG
TCGAACGAGTCTTGGCGGCAAGCTCTCTTCGGAGGCGGCAGGAGCTGCTC
TCCCAGGAGCGGTGTTCTGCAAGAGCATGACGAGGTGGGCGGTGGTTCGA
TCGTAGACGGCGAGCAAGGGGAAGCTTCTGAGGCGGCGTGCCAGGAGGAG
GAGGAGGAAGAGGAGGAGGCTGTGGAGGGCATGAACGTCAAGGATCTTAA
GGCGAAGGCCGCGGAGTCCGTCGTTCTCAGACGTCCCACACTTATCGACA
ACATCCCGCGAGGGTCTCCCACTGAGAGCCAGGCGTCGTCGAACGAGTCT
TGGCGGCAAGCTCTCTTCGGAGGCGGCAGGAGCTGCTCTCCCAGGAGCGG
TGTTCTGCAAGAGCATGACGAGGTGGGCGGTGGTTCGATCGTAGACGGCG
AGCAAGGGGAAGCTTCTGAGGCGGCGTGCCAGGAGGAGGAGGAGGAAGAG
GAGGAGGCTGTGGAGGGCATGAACGTCAAGGATCTTAAGGCGAAGGCCGC
GGAGCTGGGCATTCCCACAGGGGGGCGAAAAGGCCAGCTAAAGGCGCGCA
TAAAGCACAAACTGTCTGCCGCGAGGCTCTCCTCCGAAGACCCCCCCGCC
GCTGCCACTGTAGCCCAGCCGGAAACACCAGAAGTCGGCGGAGAGGTTGC
CCAAGCGCTGACCGATGGAGAGGCTGCTGCTGTTGATGAGTGGGAGGGAA
GTACCAGTGCCGTTGTCGAAGACTCAGACGATGCCCTCGCGACGGTAGGC
GCAAGTTGGGACGCAGGAACCGGTGGGCAAGAGGGCGAAGGAAGGAGCGG
CGGCGACCCGCCGTCGATCGAAAGCGGCGGCGTGGTGGTGGTGGACCAAA
GCGAAGCAGCTCGAGAGGGTACGGGGGTGACACCTGGTGATGACCCCGGT
CCAAGCTTGGTAGCAGTTGCGGGGACCCCGTTGGAAGAAGACGAGGTCCC
CGCCTCTGGTGATGATGATTCTACGGGGACCCTGTCACCCGGCACGGCGG
CCGCTCGACCGCCGGAGGATCTGGGCATTCCCACAGGGGGGCGAAAAGGC
CAGCTAAAGGCGCGCATAAAGCACAAACTGTCTGCCGCGAGGCTCTCCTC
CGAAGACCCCCCCGCCGCTGCCACTGTAGCCCAGCCGGAAACACCAGAAG
TCGGCGGAGAGGTTGCCCAAGCGCTGACCGATGGAGAGGCTGCTGCTGTT
GATGAGTGGGAGGGAAGTACCAGTGCCGTTGTCGAAGACTCAGACGATGC
CCTCGCGACGGTAGGCGCAAGTTGGGACGCAGGAACCGGTGGGCAAGAGG
GCGAAGGAAGGAGCGGCGGCGACCCGCCGTCGATCGAAAGCGGCGGCGTG
GTGGTGGTGGACCAAAGCGAAGCAGCTCGAGAGGGTACGGGGGTGACACC
TGGTGATGACCCCGGTCCAAGCTTGGTAGCAGTTGCGGGGACCCCGTTGG
AAGAAGACGAGGTCCCCGCCTCTGGTGATGATGATTCTACGGGGACCCTG
TCACCCGGCACGGCGGCCGCTCGACCGCCGGAGGAT
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