mRNA_E-fasciculatus_F_contig15343.3755.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15343.3755.1
Unique NamemRNA_E-fasciculatus_F_contig15343.3755.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15343.3755.1 vs. uniprot
Match: D7FVD8_ECTSI (Tousled-like protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD8_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 1.150e-63
Identity = 104/108 (96.30%), Postives = 106/108 (98.15%), Query Frame = 1 
Query:   13 QIHQQMRHPRIVNLTDVFEICCDSFATVLDYCRGTDLECLLRERNHLPERDARALVLQVARGLQYLNTAQGEGESRRGAIIHYDLKPGNILLDENGDVKITDFGLSKV 336
            +IHQQMRHPRIVNLTDVFEICCDSFATVLDYCRGTDLECLLRER  LPERDARALVLQVARGLQYLNTAQGEGESRRGAIIHYDLKPGNILLDENGDVKITDFGLSK+
Sbjct:  699 EIHQQMRHPRIVNLTDVFEICCDSFATVLDYCRGTDLECLLRERKQLPERDARALVLQVARGLQYLNTAQGEGESRRGAIIHYDLKPGNILLDENGDVKITDFGLSKI 806
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BLAST of mRNA_E-fasciculatus_F_contig15343.3755.1 vs. uniprot
Match: A0A6H5JDQ4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ4_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 1.250e-63
Identity = 104/108 (96.30%), Postives = 106/108 (98.15%), Query Frame = 1 
Query:   13 QIHQQMRHPRIVNLTDVFEICCDSFATVLDYCRGTDLECLLRERNHLPERDARALVLQVARGLQYLNTAQGEGESRRGAIIHYDLKPGNILLDENGDVKITDFGLSKV 336
            +IHQQMRHPRIVNLTDVFEICCDSFATVLDYCRGTDLECLLRER  LPERDARALVLQVARGLQYLNTAQGEGESRRGAIIHYDLKPGNILLDENGDVKITDFGLSK+
Sbjct:  711 EIHQQMRHPRIVNLTDVFEICCDSFATVLDYCRGTDLECLLRERKQLPERDARALVLQVARGLQYLNTAQGEGESRRGAIIHYDLKPGNILLDENGDVKITDFGLSKI 818
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BLAST of mRNA_E-fasciculatus_F_contig15343.3755.1 vs. uniprot
Match: A0A7S2V4Y5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4Y5_9STRA)

HSP 1 Score: 145 bits (366), Expect = 3.820e-43
Identity = 67/102 (65.69%), Postives = 82/102 (80.39%), Query Frame = 1 
Query:   16 IHQQMRHPRIVNLTDVFEICCDSFATVLDYCRGTDLECLLRERNHLPERDARALVLQVARGLQYLNTAQGEGESRRGAIIHYDLKPGNILLDENGDVKITDF 321
            IH +M HPR+V L DVFEI  +SFATVL+YCRGTDL+  LR   H+PE+DA+++V+Q+  GL+YLNT  GEG  RR  IIHYDLKPGNIL DE+G+VKITDF
Sbjct:    2 IHSEMVHPRVVRLFDVFEIDTNSFATVLEYCRGTDLDHFLRIHRHIPEKDAKSIVVQILSGLKYLNTPSGEGADRRRGIIHYDLKPGNILFDEHGEVKITDF 103
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BLAST of mRNA_E-fasciculatus_F_contig15343.3755.1 vs. uniprot
Match: A0A4D9CWT5_9STRA (Protein kinase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWT5_9STRA)

HSP 1 Score: 153 bits (386), Expect = 7.560e-41
Identity = 71/107 (66.36%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:   16 IHQQMRHPRIVNLTDVFEICCDSFATVLDYCRGTDLECLLRERNHLPERDARALVLQVARGLQYLNTAQGEGESRRGAIIHYDLKPGNILLDENGDVKITDFGLSKV 336
            IH++M HPR+V L DVFEI   SFATVL+YC+GTDL+ L++ +  +PERDARA+ +Q+  GL+YLNT  GEG +RR  IIHYDLKPGNIL DE GDVKITDFGLSK+
Sbjct:  716 IHREMIHPRVVRLFDVFEIDSSSFATVLEYCKGTDLDHLMKTQKIIPERDARAITMQILSGLRYLNTPSGEGANRRQGIIHYDLKPGNILFDEQGDVKITDFGLSKI 822
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BLAST of mRNA_E-fasciculatus_F_contig15343.3755.1 vs. uniprot
Match: K0SIU4_THAOC (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SIU4_THAOC)

HSP 1 Score: 141 bits (355), Expect = 3.510e-39
Identity = 67/108 (62.04%), Postives = 88/108 (81.48%), Query Frame = 1 
Query:   13 QIHQQMRHPRIVNLTDVFEICCDSFATVLDYCRGTDLECLLRERNHLPERDARALVLQVARGLQYLNTAQGEGESRRGAIIHYDLKPGNILLDENGDVKITDFGLSKV 336
            +IH+ +RHPRIV+L DVFEI  D+FATVL+ C+GTDL  +L++R  LPERDARA++LQ+  G++YL+T   +GE  R  IIHYDLKPGN+L DE+G+ KITDFGLSK+
Sbjct:   59 EIHRTVRHPRIVSLFDVFEIDDDAFATVLECCKGTDLSKMLQDRGRLPERDARAILLQILSGMRYLSTPSTDGE--RPGIIHYDLKPGNVLFDEDGNAKITDFGLSKI 164
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BLAST of mRNA_E-fasciculatus_F_contig15343.3755.1 vs. uniprot
Match: B8CCD2_THAPS (Protein kinase domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCD2_THAPS)

HSP 1 Score: 142 bits (359), Expect = 3.780e-39
Identity = 66/108 (61.11%), Postives = 90/108 (83.33%), Query Frame = 1 
Query:   13 QIHQQMRHPRIVNLTDVFEICCDSFATVLDYCRGTDLECLLRERNHLPERDARALVLQVARGLQYLNTAQGEGESRRGAIIHYDLKPGNILLDENGDVKITDFGLSKV 336
            +IH+++RHPRIV+L DVFEI  DSFATVL+ C+GTDL+ +L+++  +PERDARA++LQ+  G++YL++   +G  RR  IIHYDLKPGNIL DE+G+ KITDFGLSK+
Sbjct:  123 EIHREVRHPRIVSLYDVFEIDTDSFATVLECCKGTDLDTILKDQGRIPERDARAILLQILSGMRYLSSPSADG--RRQGIIHYDLKPGNILFDEHGNSKITDFGLSKI 228
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BLAST of mRNA_E-fasciculatus_F_contig15343.3755.1 vs. uniprot
Match: A0A7S2UA95_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UA95_9STRA)

HSP 1 Score: 137 bits (345), Expect = 6.460e-39
Identity = 68/108 (62.96%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:   13 QIHQQMRHPRIVNLTDVFEICCDSFATVLDYCRGTDLECLLRERNHLPERDARALVLQVARGLQYLNTAQGEGESRRGAIIHYDLKPGNILLDENGDVKITDFGLSKV 336
            +IH+ +RHPRIV+L DVFEI  +SFATVL+ C G DL+ LL+E+  LPERD+RA++LQ+  G++YL+ A  +G +R+G IIHYDLKPGNIL DE+GD KITDFGLSK+
Sbjct:   33 EIHRDVRHPRIVSLYDVFEIDSNSFATVLECCSGNDLDSLLKEKLVLPERDSRAILLQILSGMRYLSMASPDG-TRQG-IIHYDLKPGNILFDEHGDAKITDFGLSKI 138
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BLAST of mRNA_E-fasciculatus_F_contig15343.3755.1 vs. uniprot
Match: A0A7S1FQ48_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQ48_9STRA)

HSP 1 Score: 141 bits (356), Expect = 9.690e-39
Identity = 68/108 (62.96%), Postives = 86/108 (79.63%), Query Frame = 1 
Query:   13 QIHQQMRHPRIVNLTDVFEICCDSFATVLDYCRGTDLECLLRERNHLPERDARALVLQVARGLQYLNTAQGEGESRRGAIIHYDLKPGNILLDENGDVKITDFGLSKV 336
            +IH+ +RHPR+V+L DV EI  +SFATVL+YCRGTDL+ LL+ER  LPER+ARA+ LQ+  G++YL+    +G   R  IIHYDLKPGNIL DE+G VKITDFGLSK+
Sbjct:  120 EIHRDVRHPRVVSLFDVLEIDANSFATVLEYCRGTDLDSLLKERRRLPEREARAVTLQILAGMRYLSRPAEDG--MRQGIIHYDLKPGNILFDEDGGVKITDFGLSKI 225
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BLAST of mRNA_E-fasciculatus_F_contig15343.3755.1 vs. uniprot
Match: A0A7S1ZG98_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZG98_TRICV)

HSP 1 Score: 144 bits (363), Expect = 3.810e-38
Identity = 70/108 (64.81%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:   13 QIHQQMRHPRIVNLTDVFEICCDSFATVLDYCRGTDLECLLRERNHLPERDARALVLQVARGLQYLNTAQGEGESRRGAIIHYDLKPGNILLDENGDVKITDFGLSKV 336
            +IH+Q+RHPRIV+L DVFEI  DSFATVL+ C GTDL+ +L+ER +LPERDARA++LQ+  G++YL++   +GE  R  IIHYDLKPGNIL D+ GD KITDFGLSK+
Sbjct:  380 EIHRQVRHPRIVSLFDVFEIDEDSFATVLECCGGTDLDTVLKERRNLPERDARAVLLQILSGMRYLSSPSSDGE--RQGIIHYDLKPGNILFDKYGDAKITDFGLSKI 485
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BLAST of mRNA_E-fasciculatus_F_contig15343.3755.1 vs. uniprot
Match: A0A448ZI37_9STRA (Protein kinase domain-containing protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZI37_9STRA)

HSP 1 Score: 142 bits (358), Expect = 4.600e-37
Identity = 70/108 (64.81%), Postives = 88/108 (81.48%), Query Frame = 1 
Query:   13 QIHQQMRHPRIVNLTDVFEICCDSFATVLDYCRGTDLECLLRERNHLPERDARALVLQVARGLQYLNTAQGEGESRRGAIIHYDLKPGNILLDENGDVKITDFGLSKV 336
            +IH+ +RHPRIV+L DVFEI  +SFATVL+YC+GTDL+ LL+ +  LPER ARA++LQ+  G+QYL+    +G SR+G IIHYDLKPGNIL DE GD KITDFGLSK+
Sbjct:  792 EIHRNVRHPRIVSLYDVFEIDNNSFATVLEYCKGTDLDTLLKRKKRLPERQARAILLQILTGMQYLSQPSSDG-SRQG-IIHYDLKPGNILFDEFGDAKITDFGLSKI 897
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15343.3755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVD8_ECTSI1.150e-6396.30Tousled-like protein kinase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JDQ4_9PHAE1.250e-6396.30Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S2V4Y5_9STRA3.820e-4365.69Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9CWT5_9STRA7.560e-4166.36Protein kinase domain-containing protein n=2 Tax=M... [more]
K0SIU4_THAOC3.510e-3962.04Protein kinase domain-containing protein (Fragment... [more]
B8CCD2_THAPS3.780e-3961.11Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A7S2UA95_9STRA6.460e-3962.96Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S1FQ48_9STRA9.690e-3962.96Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1ZG98_TRICV3.810e-3864.81Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A448ZI37_9STRA4.600e-3764.81Protein kinase domain-containing protein n=2 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15343contigE-fasciculatus_F_contig15343:2214..2872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.5
Seed ortholog evalue6.5e-54
Seed eggNOG ortholog2880.D7FVD8
Preferred nameTLK2
KEGG koko:K08864
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0010468,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019222,GO:0019538,GO:0036211,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0060147,GO:0060255,GO:0060966,GO:0060968,GO:0065007,GO:0071704,GO:0140096,GO:1900368,GO:1901564
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG1151@1,KOG1151@2759
EC2.7.11.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928012.3240266-CDS-E-fasciculatus_F_contig15343:2213..24351622928012.3240266-CDS-E-fasciculatus_F_contig15343:2213..2435Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15343 2214..2435 +
1695995788.2793496-CDS-E-fasciculatus_F_contig15343:2213..24351695995788.2793496-CDS-E-fasciculatus_F_contig15343:2213..2435Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15343 2214..2435 +
1622928012.3390172-CDS-E-fasciculatus_F_contig15343:2758..28721622928012.3390172-CDS-E-fasciculatus_F_contig15343:2758..2872Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15343 2759..2872 +
1695995788.2925255-CDS-E-fasciculatus_F_contig15343:2758..28721695995788.2925255-CDS-E-fasciculatus_F_contig15343:2758..2872Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15343 2759..2872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15343.3755.1prot_E-fasciculatus_F_contig15343.3755.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15343 2214..2872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15343.3755.1

>prot_E-fasciculatus_F_contig15343.3755.1 ID=prot_E-fasciculatus_F_contig15343.3755.1|Name=mRNA_E-fasciculatus_F_contig15343.3755.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=112bp
MPTPQIHQQMRHPRIVNLTDVFEICCDSFATVLDYCRGTDLECLLRERNH
LPERDARALVLQVARGLQYLNTAQGEGESRRGAIIHYDLKPGNILLDENG
DVKITDFGLSKV
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mRNA from alignment at E-fasciculatus_F_contig15343:2214..2872+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15343.3755.1 ID=mRNA_E-fasciculatus_F_contig15343.3755.1|Name=mRNA_E-fasciculatus_F_contig15343.3755.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=659bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15343:2214..2872+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCAACTCCACAGATCCACCAGCAAATGCGGCACCCGCGCATCGTGAA
CCTCACGGACGTGTTCGAGATTTGTTGCGATTCCTTTGCGACGGTGCTGG
ACTACTGCCGAGGGACTGACTTGGAGTGCCTGCTCCGCGAGAGAAACCAC
CTGCCGGAACGAGATGCGCGGGCTTTAGTTCTCCAAGTAGCGAGAGGTCT
ACAGTACCTGAACACCGCTCAGGTAGCAGGGATAGATATCTGCTAGAGGG
CGTGATTTTTCATGCCTCAGCAACCCGCCGTCCGCGTCTCTTCGTGGAGC
TCCTTAGTTTTTCGGGCGGAATGAGACCAAATATTTGTAGTTCATACCTC
GTAACGCGAAGTAGTTGAAAGCAGTATTGCGTCCACGGTACCTTTCCTTT
GGCTTGAACTCATCAGGACGGCTGTAGAAAACTTGAGCCCTCAATTTGCA
TCAATTTGCATGCCAGACAAGAGCATGAATAGTGTTGTTTGACTATGGCA
TCCTCCCACATTGCGTGTGTGCCTGGACGTGCTTGTGTTTTGCAGGGCGA
AGGGGAGAGTCGGAGAGGTGCAATCATCCACTACGACCTCAAGCCTGGCA
ACATCTTGCTCGACGAAAACGGGGACGTCAAGATCACAGACTTCGGCTTG
TCCAAGGTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15343:2214..2872+

>mRNA_E-fasciculatus_F_contig15343.3755.1 ID=mRNA_E-fasciculatus_F_contig15343.3755.1|Name=mRNA_E-fasciculatus_F_contig15343.3755.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=672bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15343:2214..2872+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCAACTCCACAGATCCACCAGCAAATGCGGCACCCGCGCATCGTGAA
CCTCACGGACGTGTTCGAGATTTGTTGCGATTCCTTTGCGACGGTGCTGG
ACTACTGCCGAGGGACTGACTTGGAGTGCCTGCTCCGCGAGAGAAACCAC
CTGCCGGAACGAGATGCGCGGGCTTTAGTTCTCCAAGTAGCGAGAGGTCT
ACAGTACCTGAACACCGCTCAGATGCCAACTCCACAGATCCACCAGCAAA
TGCGGCACCCGCGCATCGTGAACCTCACGGACGTGTTCGAGATTTGTTGC
GATTCCTTTGCGACGGTGCTGGACTACTGCCGAGGGACTGACTTGGAGTG
CCTGCTCCGCGAGAGAAACCACCTGCCGGAACGAGATGCGCGGGCTTTAG
TTCTCCAAGTAGCGAGAGGTCTACAGTACCTGAACACCGCTCAGGGCGAA
GGGGAGAGTCGGAGAGGTGCAATCATCCACTACGACCTCAAGCCTGGCAA
CATCTTGCTCGACGAAAACGGGGACGTCAAGATCACAGACTTCGGCTTGT
CCAAGGTAGGCGAAGGGGAGAGTCGGAGAGGTGCAATCATCCACTACGAC
CTCAAGCCTGGCAACATCTTGCTCGACGAAAACGGGGACGTCAAGATCAC
AGACTTCGGCTTGTCCAAGGTA
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