mRNA_E-fasciculatus_F_contig15342.3754.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15342.3754.1
Unique NamemRNA_E-fasciculatus_F_contig15342.3754.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15342.3754.1 vs. uniprot
Match: D7FLJ2_ECTSI (TKL family protein kinase protein kinase/ putative CTR1-like protein kinase/ leucine rich repeat pr n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ2_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 3.800e-7
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = 2 
Query:   11 SGHTCAFTCTYTGHSRAGIYPSTYAGTRLDL 103
            SGHTC + CT TGH RAGIYP+TYAG RL+L
Sbjct:  289 SGHTCGYACTCTGHGRAGIYPTTYAGIRLEL 319
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BLAST of mRNA_E-fasciculatus_F_contig15342.3754.1 vs. uniprot
Match: D8LH31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH31_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 3.830e-7
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 VSRQRPHLRLHLHLHWAQPRRNLPLNLRRYPTRSPKPLHLHP 126
            +SRQRPH RL+LH  WA+PRRNLPLNLRR+  R+ K  HL P
Sbjct:    1 MSRQRPHFRLYLH--WARPRRNLPLNLRRHLARAQKRPHLRP 40
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BLAST of mRNA_E-fasciculatus_F_contig15342.3754.1 vs. uniprot
Match: A0A6H5JQG3_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG3_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.180e-5
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 2 
Query:   14 GHTCAFTCTYTGHSRAGIYPSTYAGTRLDL 103
            GHT A+ CTYTGH RAGI P+TYA TRL+L
Sbjct:   56 GHTFAYACTYTGHDRAGICPTTYAATRLEL 85
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15342.3754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLJ2_ECTSI3.800e-774.19TKL family protein kinase protein kinase/ putative... [more]
D8LH31_ECTSI3.830e-766.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQG3_9PHAE1.180e-573.33Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15342contigE-fasciculatus_F_contig15342:1254..2825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_011010.1
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928012.2195733-CDS-E-fasciculatus_F_contig15342:1253..13521622928012.2195733-CDS-E-fasciculatus_F_contig15342:1253..1352Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15342 1254..1352 -
1695995788.2583022-CDS-E-fasciculatus_F_contig15342:1253..13521695995788.2583022-CDS-E-fasciculatus_F_contig15342:1253..1352Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15342 1254..1352 -
1622928012.231195-CDS-E-fasciculatus_F_contig15342:2717..28251622928012.231195-CDS-E-fasciculatus_F_contig15342:2717..2825Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15342 2718..2825 -
1695995788.2679725-CDS-E-fasciculatus_F_contig15342:2717..28251695995788.2679725-CDS-E-fasciculatus_F_contig15342:2717..2825Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15342 2718..2825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15342.3754.1prot_E-fasciculatus_F_contig15342.3754.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15342 1254..2825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15342.3754.1

>prot_E-fasciculatus_F_contig15342.3754.1 ID=prot_E-fasciculatus_F_contig15342.3754.1|Name=mRNA_E-fasciculatus_F_contig15342.3754.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=69bp
VSRQRPHLRLHLHLHWAQPRRNLPLNLRRYPTRSPKPLHLHPCLHLHWAL
PRRNLLRNPRRYPARAQKV
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mRNA from alignment at E-fasciculatus_F_contig15342:1254..2825-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15342.3754.1 ID=mRNA_E-fasciculatus_F_contig15342.3754.1|Name=mRNA_E-fasciculatus_F_contig15342.3754.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1572bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15342:1254..2825- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCTCGCGGCAGCGGCCACACTTGCGCCTTCACCTGCACCTACACTGGGC
ACAGCCGCGCCGGAATCTACCCCTCAACCTACGCCGGTACCCGACTCGAT
CTCCGAAGGTACGAGACTTGATGCCGCATCTCCCGTTCATGTGGGGAATT
TTGTATTGTCGAAAGCAGGAACCTCGCCGTCGAATGTCGACATGTCCCCG
GCTTTGCTCCTAACGTTCGCAGTTCACTACCACCCGGAGTGATATTTTTC
CGCACCCAAAACCTTGCACCCTCCTCAAAGCAATGTTTGTCTATCCGGCC
TATGACGGGGCCATCACATCGCTGCTACAGCAGTAGTGAACGAATGGTCT
CAGTTTCTTCTAAAGCTGTTGCCGGGCCTCTGTTGCTTGTGTGCTTCCTA
CACGCTGCGCAAGTCATGGAGTATGTTGGAATAACTCCGAACGTGAGAGC
GCCTGAACCAATATTCAATATTCTGGCCGGAATCTCATGTTGCATGTGCG
ACCGCTATTTGTCGCCAGAACCATTCAATACATGAAAAGACTAGATCAAG
CACTATTCTCTCCACTGATTGAGCGCACGCATCCATGCCGCCAAGGAAGG
TCATCTGTCGTCCTTCTCTTGCTGGCTTGGCTTTCCCGCCGGGTATCTAG
AGTGAAGCATGCGAGCCGGTGAAGCTCTCGATTGTCCAACCAAAATACGT
CCCTTCAATCCCTTCCTGATATCTCGCGGCAGCGGCCACACTTGCACCCG
TGTCTGCACCTGCTCTAGACACGGCCGCGCCGGAATCTGCCTCACAACCT
ACGCTGGTACCCGGCTCGAGCTCAGAAGGTAAGAGACTTGATGGTGCATC
TCCCGCTCAACTGGGGCATGCCGTGTTGCGAAAAATATGAATGAAGCCGT
CGAAGTTGACTTATCCCCGGCTTTGCTCCAAATGTGCCTGGTTCCCCACC
ATCCAGCGTGATCATTTTCCCCACCCCAAACCTTCCGCCATCCTCAAGGC
TACGCTATTCTGTCCGGCATTTTACGGAGGTGGTAGAAATAATCACCGCT
AGACCGAGGGGTCTCAGCTCCTAGTGCTCTTTCCCACTTCTCTCTGTTGC
TTGCGTGCTTCCTACGCGGTGCGCAAGGGTCATTGATGTTGACAAAGCTC
CTAACGACAGCGCCCGAACCTATGTTCCGGCAGGAATCCCTTAGGTTGCA
CTTTCGACTGCTGTTTGTTGCCAGACCCATTCAAGCCTCTAAACGGCGTT
CTCAAGCGCTGTGCCTTCCGAACGTGTGATTATTCTATCAACTGATTGAG
GGCACGCATCCATACGACCAAAAGGAGGTCGTCTGTCGTTCTTCTCTTCG
TCTTGTTGGCGTGGCTTCCCGCTCCTCCGGCTGGGGTACGTATGGTGAAT
ACGATGAGTGAATATCTCGTTTGTCCAACCTAATGTATCCTTCAATACCC
GCCTTCCTGGTATCTCGCGGCAGCCGCTACACTTGCACCCGTGTCTGCAC
CTGCACTGGGCACTGCCGCGCCGGAATCTGCTCCGCAACCCACGCCGGTA
CCCGGCTCGAGCTCAGAAGGTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15342:1254..2825-

>mRNA_E-fasciculatus_F_contig15342.3754.1 ID=mRNA_E-fasciculatus_F_contig15342.3754.1|Name=mRNA_E-fasciculatus_F_contig15342.3754.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15342:1254..2825- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCTCGCGGCAGCGGCCACACTTGCGCCTTCACCTGCACCTACACTGGGC
ACAGCCGCGCCGGAATCTACCCCTCAACCTACGCCGGTACCCGACTCGAT
CTCCGAAGGTCTCGCGGCAGCGGCCACACTTGCGCCTTCACCTGCACCTA
CACTGGGCACAGCCGCGCCGGAATCTACCCCTCAACCTACGCCGGTACCC
GACTCGATCTCCGAAGCCGCTACACTTGCACCCGTGTCTGCACCTGCACT
GGGCACTGCCGCGCCGGAATCTGCTCCGCAACCCACGCCGGTACCCGGCT
CGAGCTCAGAAGGTACCGCTACACTTGCACCCGTGTCTGCACCTGCACTG
GGCACTGCCGCGCCGGAATCTGCTCCGCAACCCACGCCGGTACCCGGCTC
GAGCTCAGAAGGTA
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