prot_E-fasciculatus_F_contig15341.3753.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig15341.3753.1
Unique Nameprot_E-fasciculatus_F_contig15341.3753.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length35
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15341.3753.1 vs. uniprot
Match: A0A6H5KBX5_9PHAE (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBX5_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.560e-14
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 0 
Query:    1 HDREGRVIAIEYPSVTVLALYVPNNGSKTESFQRR 35
            HDREGRVIAIEYPSVTVLALYVPNNGSK ESFQRR
Sbjct:  194 HDREGRVIAIEYPSVTVLALYVPNNGSKAESFQRR 228
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15341.3753.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBX5_9PHAE4.560e-1497.14DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10coord: 1..35
e-value: 5.3E-6
score: 28.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15341contigE-fasciculatus_F_contig15341:2473..2577 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15341.3753.1mRNA_E-fasciculatus_F_contig15341.3753.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig15341 2473..2577 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig15341.3753.1 ID=prot_E-fasciculatus_F_contig15341.3753.1|Name=mRNA_E-fasciculatus_F_contig15341.3753.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=35bp
HDREGRVIAIEYPSVTVLALYVPNNGSKTESFQRR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036691Endo/exonu/phosph_ase_sf