mRNA_E-fasciculatus_F_contig1534.3751.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1534.3751.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI) HSP 1 Score: 676 bits (1744), Expect = 9.400e-233 Identity = 385/450 (85.56%), Postives = 399/450 (88.67%), Query Frame = 2
Query: 77 MNKMNFAALLGVALALAGSAGAQTCTGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGIMCSDTGVAPCILSTEAAPADSVCDNGQTGVQDPDTDVCCPLECGDSCGGDGCGTIPGVDASQCCASIIEQSGIVCGDGVEAPCSQVAVAIADSVCSNGFPGIENDDASVCCDAACGVCGGSTCGNVPGLTGADCCTGTIIANDELCSVKGAAPCVVDPPEVIASTCANGLPGVSSGSVCCAEACNGVCGGLGCGDIAGTAGADDCCSATILANNIACVDTAPCVMVEGTFTPAPAVVPTVATETLAPLAPGETVTMAPTPTSQTASPTAGSRDLDFGTGVPTPAPTSVEELGASXXXXXXXXXXXXGGS-AXXXXXXXXXXXTAGPTALGEXXXXXXXXXXXXXXXXXALSAGSVVTVAAMAGGMFAVLAATRN 1423
MNKMNFAALLGV LALAGS GAQTC GGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESG+MCSDTGVAPCILSTEAA ADSVCDNGQTGVQDPDTDVCCPLECG+SCGG+GCGTIPGVDASQCCASIIEQSGIVCGDG+EAPC+QVAVA+ADSVCSNGFPGIEN+DA+VCCD AC VCGGSTCGNV GLTGADCCTGTIIANDELCS KG+APCVVDPPEV ASTCANGL GVSSGSVCCAE CNGV T GA+DCCSATILA NIACVDTAPCVMVEGTFTPAPAVVPTVA T APLAPGETVTMAPTPTSQTA+PT GSRDLDFGTGVPTPAPTSVEE G S XXXXXXXXXX G S AXXXXXXXXXXXTAGP+ALG+ ALSAGSVV+VAAMAGGMFAVLAATRN
Sbjct: 1 MNKMNFAALLGVVLALAGSVGAQTCAGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGVMCSDTGVAPCILSTEAASADSVCDNGQTGVQDPDTDVCCPLECGESCGGEGCGTIPGVDASQCCASIIEQSGIVCGDGIEAPCTQVAVAVADSVCSNGFPGIENEDATVCCDPACVVCGGSTCGNVAGLTGADCCTGTIIANDELCSEKGSAPCVVDPPEVTASTCANGLAGVSSGSVCCAEVCNGVXXXXXXXXXXXTNGAEDCCSATILAANIACVDTAPCVMVEGTFTPAPAVVPTVAATTTAPLAPGETVTMAPTPTSQTAAPTPGSRDLDFGTGVPTPAPTSVEEAGMSSXXXXXXXXXXIGESMAXXXXXXXXXXXTAGPSALGDTMAPSTAPPGAATAGSAALSAGSVVSVAAMAGGMFAVLAATRN 450
BLAST of mRNA_E-fasciculatus_F_contig1534.3751.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE) HSP 1 Score: 380 bits (977), Expect = 1.930e-117 Identity = 215/372 (57.80%), Postives = 257/372 (69.09%), Query Frame = 2
Query: 89 NFAALLGVALALAGSAGAQT-----CTGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGIMCSDTGVAPCILSTEAAPADSVCDNGQTGVQDPDTDVCCPLECGDSCGGDGCGTIPGVDASQCCASIIEQSGIVCGDGVEAPCSQVAVAIADS--VCSNGFPGIENDDASVCCDAACGVCGGSTCGNVPGLTGADCCTGTIIANDELCSVKGAAPCVVDPPEVIASTCANGLPGVSSGSVCCAEACNGVCGGLGCGDIAGTAGADDCCSATILANNIACVD--TAPCVMVEGTFTPAPAVVPTVATETLAPLAPGETVTMAPTPTSQTASPTAGSRDLDFGTGVPTPAPTSVEEL 1177
+F AL+ VA+AL G T C+ G+ G++STSLDVCC C CGGV CTPANTSSLT+ DCCATEI ESG C + APCI++T AA DSVC+NGQTGV DPDTDVCCPLECGDSCGG+GCG+IPGV+A+QCC+S+I +SG VC D V APC V A AD+ CSNG GIE+ +CCDAACG+CGG CGNV GLTG DCC+ I ++LCSV APCV+DPP+ +ASTC NGL GV GSVCCAE CNGVCGG GCG I GT GA+DCCS TILA + C + APC+M+ GT+T AP PT APG TV AP + T +P AG+R+ F T APT + ++
Sbjct: 7 SFTALVCVAIALL--VGTMTPAGAVCSNGLEGIQSTSLDVCCVEGCEVCGGVDCTPANTSSLTSADCCATEIVESGTFCDVSMAAPCIITTAAAANDSVCENGQTGVPDPDTDVCCPLECGDSCGGEGCGSIPGVNATQCCSSLIIESGAVCSDTVSAPCV-VGAAEADNSTTCSNGIVGIEDPVNLICCDAACGLCGGPGCGNVTGLTGLDCCSEEIAVVNDLCSVTNEAPCVMDPPDFVASTCPNGLAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSNTILATGVDCEEGVMAPCIMLNGTYTDAPMAAPTFPPAA----APGTTV--APGAVAATEAPVAGTREFRF-----TQAPTQLLDV 364
BLAST of mRNA_E-fasciculatus_F_contig1534.3751.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI) HSP 1 Score: 216 bits (549), Expect = 1.250e-60 Identity = 114/183 (62.30%), Postives = 137/183 (74.86%), Query Frame = 2
Query: 89 NFAALLGVALALAGSAGAQT-----CTGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGIMCSDTGVAPCILSTEAAPADSVCDNGQTGVQDPDTDVCCPLECGDSCGGDGCGTIPGVDASQCCASIIEQSGIVCGDGVEAPCSQVAVAIADS--VCSNGFPGIEN 616
+F AL+ VA+AL G T C+ G+ G++STSLD CC ECG CGGVGCTPANTSSLT+ DCCATEI ESG +C + APCI++T AA DSVC+NGQTGVQDPDTDVCCPL CGDSCGG+GCG++ GVDA+QCC+++I +SG VC D V APC V A AD+ CSNG GIE+
Sbjct: 7 SFTALVCVAIALL--VGTMTPAGAVCSNGLEGIQSTSLDACCVEECGLCGGVGCTPANTSSLTSADCCATEIIESGTLCEVSMAAPCIITTAAASNDSVCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSLAGVDATQCCSNLIIESGAVCSDTVSAPCV-VGAAEADNSTTCSNGIVGIED 186
BLAST of mRNA_E-fasciculatus_F_contig1534.3751.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 145 bits (366), Expect = 2.080e-31 Identity = 128/392 (32.65%), Postives = 161/392 (41.07%), Query Frame = 2
Query: 149 CTGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGIMCSDTGVAPCILSTEAAPADSVCDNGQTGVQDPDTDVCCPLECGDSCGGDGCGTIPG-VDASQCCASIIEQSGIVCGDGVEAPC---------SQVAVAIA--------------------------------------------------DSVCSNGFPGIENDDASVCCDAACGVCGGSTCGNVPGLTGAD-CCTGTIIANDELCSVKGAAPCVVD-----PPEVIAST---------------------------------CANGLPGVSSGSVCCAEACNGVCGGLGCGDIAGTAGADDCCSATILANNIACVD--TAPCVMVEGTFTPAPAVVPT 1021
C+ GI G++S + CC ECG CGG GC L ++CC +EI + G +CS APC++ D +C NG G+Q + CC ECG CGG GC + G + CC S IE G +C + APC S VA+ A CSNG PGI++ +A CC A CG CGGS C + G G D CC I ELCSVK AAPCVVD P V T C+NG+PG+ SG+ CC C G CGG GC + G G D+CC + I C APCV+ P+P +PT
Sbjct: 1576 CSNGIPGIQSGNA--CCLAECGGCGGSGCAQLG-GGLGEDNCCQSEIEDFGELCSVKMAAPCVV-------DDMCSNGIPGIQSGN--ACCLAECG-GCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDGSAPAPSPVAMPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTCSNGIPGIQSGNA--CCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDGSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDMCSNGIPGIQSGNACCLAECGG-CGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDGSAPAPSPVAMPT 1951
BLAST of mRNA_E-fasciculatus_F_contig1534.3751.1 vs. uniprot
Match: D8LML4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML4_ECTSI) HSP 1 Score: 110 bits (275), Expect = 5.540e-23 Identity = 70/139 (50.36%), Postives = 88/139 (63.31%), Query Frame = 2
Query: 770 VDPPEVIASTCANGLPGVSSGSVCCAEACNGVCGGLGCGDIAGTAGADDCCSATILANNIACVD--TAPCVMVEGTFTPAPAVVPTVATETLAPLA-PGETVTMAPTPTSQTASPTAGSRDLDFGTGVPTPAPTSVEEL 1177
+DPP+ +ASTC NG+ GV GSVCCAE CNGVCGG GCG I GT GA+DCCS+TIL + C APC+M+ GT+T AP PT P+A PG TV AP + T +P AG+R+ F T APT + ++
Sbjct: 1 MDPPDFVASTCPNGIAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSSTILTTGVDCDVGVVAPCIMLNGTYTDAPMAAPT-----FPPVAAPGTTV--APGAVATTEAPLAGTREFQF-----TQAPTQLLDV 127
BLAST of mRNA_E-fasciculatus_F_contig1534.3751.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 114 bits (284), Expect = 5.540e-22 Identity = 105/306 (34.31%), Postives = 137/306 (44.77%), Query Frame = 2
Query: 128 GSAGAQTCTGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGIMCSDTGVAPCILSTEAAPADSVCDNGQTGVQDPDT----DVCCPLECGDSCGGDGCGTIPG-VDASQCCASIIEQSGIVCG------DGVEAPCSQVAVAIADSVCSNGF---PGIENDDASVCCDAACGVCGGSTCGNVPG-LTGADCCTGTIIANDELCSVKGAAPCVVD----PPEVIASTCANG---LPGVSSGSVCCAEACNGVCGGLGCGDIAGTAGADDCCSATILANNIACVDTAPCVM 979
GS+ +GG G+ DVCC+ ECGTCGG GC + + LTAN+CC + I+ + + C G APC++ + +P +G D D CC C + CGG GC G + + CC S I V G DG +P +G G+ D CC A C CGGS C + G LTGADCCT I LCSV GAAPC+VD P +G GV G CC+ C G CGG DCC++ I +N + APC++
Sbjct: 77 GSSPTPASSGGCDGILQG--DVCCSAECGTCGGSGC--GSRAGLTANECCTSTIAAANVPC---GSAPCVVDGDTSPTXXXXXXXXSGSFTCDGVLKGDYCCSAGCVE-CGGSGCSDRGGGLTGADCCTSDISNLCSVTGAAPCIVDGDTSPTXXXXXXXXXXXXXSGSFTCDGVLKGD--YCCSAGCVECGGSGCSDRGGGLTGADCCTSDI---SNLCSVTGAAPCIVDGDTSPTXXXXXXXXSGSFTCDGVLKGDYCCSAGC-GECGGXXXXXXXXGLTGADCCTSDI-SNLCSVTGAAPCIV 367
BLAST of mRNA_E-fasciculatus_F_contig1534.3751.1 vs. uniprot
Match: A0A6H5JU45_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU45_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 3.690e-16 Identity = 91/274 (33.21%), Postives = 118/274 (43.07%), Query Frame = 2
Query: 104 LGVALALAGSAGAQTCTGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGIMCSDTGVAPCI------LSTEAAPADSVCDNG------------------QTGVQDPDTDVCCPLECGDS------------CGGDG----------CGTIPGVDASQCCA-----SIIEQSGIVCGDGVEAPCSQVAVAIADSVCSNGFPGIENDDASVCCDAACGVCGGSTCGNVPGLTGADCCTGTIIANDELCSVKGAAPCVV 772
LGVA+ G AQTC G++GV ST + CCTL CGTCGG GC+ + L +DCC + I+ +GI+C+D+G APCI +ST G + D C L C DS CG +G C G DA + C S+ E G + VE CS D+ S+G S CC+A C CGGS C + G A CCT +I + LCS GAAPC++
Sbjct: 13 LGVAI---GVTTAQTCDNGLAGV-STGV-YCCTLGCGTCGGSGCS-SRAEGLNGDDCCTSNIASNGILCADSGAAPCIGDVDDDVSTXXXXXXXXXPVGSSYLGCFSDLPGSRIFTFEAATYTMTADACLAL-CADSAYYGTQYSEECWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAISVYENDG----EPVEFSCS------GDAGVSSG---------SSCCEADCDTCGGSGCSS-RGSGAASCCTSSIQSAGTLCSDSGAAPCIL 259
BLAST of mRNA_E-fasciculatus_F_contig1534.3751.1 vs. uniprot
Match: A0A6H5JZG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG5_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 2.630e-14 Identity = 69/217 (31.80%), Postives = 94/217 (43.32%), Query Frame = 2
Query: 134 AGAQTCTGGISGVESTSLDVCCTLECGTCGGVGC-TPANTSSLTANDCCATEISESGIMCSDTGVAPCILSTEAAPADSVCDNGQTGVQDPDTDVCCPLECGDSCGGDGCGTIPGVDASQCCASIIEQSGIVCGDGVEAPCSQVAVAIADSVCSNGFPGIENDDASVCCDAACGVCGGSTC---GNVPGLTGADCCTGTIIANDELCSVKGAAPCVV 772
AGA+TC+ G+ G++ + VCC+L+CG CGG GC T + + L + CC+ I S C +T APCI+ + G + P V V Q C + + + G VE CSNG GI+ VCC CG CGG C G+ GL G CC+G I A+DE C APC++
Sbjct: 236 AGAETCSNGLEGIDGSG-GVCCSLDCGQCGGKGCYTSGSANGLGGDFCCSGGIKASDEYCDETNEAPCIIGSRP---------GAKMIHVPSLHV----------------IYDRVTHKQACLANVYLFFL--GQSVE-------------TCSNGLEGIDGSG-GVCCPLDCGQCGGKGCYTSGSANGLGGDFCCSGGIKASDEYCDETNEAPCII 410
BLAST of mRNA_E-fasciculatus_F_contig1534.3751.1 vs. uniprot
Match: A0A0G4EQ49_VITBC (GH10 domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EQ49_VITBC) HSP 1 Score: 85.5 bits (210), Expect = 4.000e-13 Identity = 78/244 (31.97%), Postives = 98/244 (40.16%), Query Frame = 2
Query: 143 QTCTGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGI--MCSDTGVAPC-----------------ILSTEAAPADS------------VCDNGQTGVQDPDTDVCCPLECGDSCGG-DGCGTIPGVDASQCCASIIEQSGIVCGDGVEAPCSQVAVAIADSVCSNGFPGIENDDASVCCDAACGVCGGSTCGNVPGLTGAD-CCTGTIIANDEL--CSVKGAAPCV 769
+ C + GV T VCC ECGTCGG GC A + + CC+ EI + G+ CS T APC +L T AA S +C+ G +PD CCPL CGD CGG D C G CC E G C PC + + C + G + + CC CG C C + G GA+ CC I AN E C + APC+
Sbjct: 268 RVCEEFLGGVFHTRRGVCCPRECGTCGGEGC--ALRADGRPDLCCSKEIKQRGVDGYCSMTYAAPCTVDDSMVAQLERGESVRVLGTTAAAVSSNVPQKAQLSNQALCEEELMGKFNPDKQACCPLSCGDDCGGNDAC---MGSQKDICCPMEFENYGPKCETNAPLPC--LFELTKEQYCKHVAYGSYHAATNACCMRMCGSCEDDGCEDRDG--GAENCCPSQIAANPETPTCELPAWAPCM 502
BLAST of mRNA_E-fasciculatus_F_contig1534.3751.1 vs. uniprot
Match: D8LSQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ5_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 1.580e-11 Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 2
Query: 584 VCSNGFPGIE--NDDASVCCDAACGVCGGSTCGNVPGLTGADCCTGTIIANDELCSVKGAAPCVVD 775
VCSN GIE N++ VCC A CG CGG CG+VPGL +CC ++ N ELCSV GAAPCV+D
Sbjct: 43 VCSNSMNGIEGINENGVVCCTAECGQCGGEGCGSVPGLDNTNCCINGVLNNQELCSVAGAAPCVID 108 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1534.3751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1534.3751.1 >prot_E-fasciculatus_F_contig1534.3751.1 ID=prot_E-fasciculatus_F_contig1534.3751.1|Name=mRNA_E-fasciculatus_F_contig1534.3751.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=451bp MMNKMNFAALLGVALALAGSAGAQTCTGGISGVESTSLDVCCTLECGTCGback to top mRNA from alignment at E-fasciculatus_F_contig1534:3503..9485+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1534.3751.1 ID=mRNA_E-fasciculatus_F_contig1534.3751.1|Name=mRNA_E-fasciculatus_F_contig1534.3751.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5983bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1534:3503..9485+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1534:3503..9485+ >mRNA_E-fasciculatus_F_contig1534.3751.1 ID=mRNA_E-fasciculatus_F_contig1534.3751.1|Name=mRNA_E-fasciculatus_F_contig1534.3751.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2706bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1534:3503..9485+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |