mRNA_E-fasciculatus_F_contig1534.3750.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1534.3750.1 vs. uniprot
Match: A0A6H5KIR5_9PHAE (Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIR5_9PHAE) HSP 1 Score: 236 bits (601), Expect = 8.490e-70 Identity = 131/158 (82.91%), Postives = 136/158 (86.08%), Query Frame = 3
Query: 3 VQKRLRREMRAALSVADVLLAPTTPFPPFPSCGPPADPASLLLNDVLTVPISLTGVPAVSIPVATMPAARRTTPVVTNSSSSCGSDRGEXXXXXXXXXXXXXXAPGAEHCRLPLGMQIIGRPLGEAAILRVAHELESRLDFASQVPERVREPRSEQFV 476
V+KRLRREMRAALS ADVLLAPTTPFPPFPSCGPPADPASLLLNDVLTVPISLTGVPAVSIPVAT P ARRTTP VT S+S C SDRG X APGAEHCRLPLGMQIIGRPLGEAA+LRVAHELESRLDFASQVPERVREPR+E+ V
Sbjct: 428 VRKRLRREMRAALSEADVLLAPTTPFPPFPSCGPPADPASLLLNDVLTVPISLTGVPAVSIPVATTPTARRTTPAVT-STSCCSSDRGGAGXSGGAEAGVGAAAPGAEHCRLPLGMQIIGRPLGEAAMLRVAHELESRLDFASQVPERVREPRAERRV 584
BLAST of mRNA_E-fasciculatus_F_contig1534.3750.1 vs. uniprot
Match: D8LG70_ECTSI (Amidase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG70_ECTSI) HSP 1 Score: 214 bits (544), Expect = 1.580e-66 Identity = 132/151 (87.42%), Postives = 135/151 (89.40%), Query Frame = 3
Query: 27 MRAALSVADVLLAPTTPFPPFPSCGPPADPASLLLNDVLTVPISLTGVPAVSIPVATMPAARRTTPVVTNSSSSCGSDRGEXXXXXXXXXXXXXXAPGAEHCRLPLGMQIIGRPLGEAAILRVAHELESRLDFASQVPERVREPRSEQFVR 479
MRAAL+VADVLLAPTTPFPPFPSCGPPADPASLLLNDVLTVPISLTGVPAVSIPVAT P ARRT SSCGSDRG XXXXXXXXXXXXXX A HCRLPLGMQIIGRPLGEAA+LRVAHELESRLDFASQVPERVREPR+EQ VR
Sbjct: 1 MRAALAVADVLLAPTTPFPPFPSCGPPADPASLLLNDVLTVPISLTGVPAVSIPVATTPTARRTXXXXXXXXSSCGSDRGXXXXXXXXXXXXXXXXXXAGHCRLPLGMQIIGRPLGEAAMLRVAHELESRLDFASQVPERVREPRAEQCVR 151
BLAST of mRNA_E-fasciculatus_F_contig1534.3750.1 vs. uniprot
Match: W7TVN2_9STRA (Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVN2_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 7.450e-14 Identity = 57/146 (39.04%), Postives = 78/146 (53.42%), Query Frame = 3
Query: 12 RLRREMRAALSVADVLLAPTTPFPPFPSCGPPADPASLLLNDVLTVPISLTGVPAVSIPVATMPAARRTTPVVTNSSSSCGSDRGEXXXXXXXXXXXXXXAPGAEHCRLPLGMQIIGRPLGEAAILRVAHELESRLDFASQVPERV 449
RLRREM ALS DVLL P TP PFP P A+PA+L++NDV+TVP SL G+PA+++PV P++ PG +P+G+Q+IGR L E +L VA LE R +F+ ++P+ V
Sbjct: 491 RLRREMNTALSHVDVLLTPVTPTGPFPLTTP-AEPAALMVNDVMTVPASLAGLPAIAVPVDLAPSS---------------------------------FVPGLP---VPVGLQLIGRHLCEQQLLIVARALEVRCNFSERIPDYV 599
BLAST of mRNA_E-fasciculatus_F_contig1534.3750.1 vs. uniprot
Match: UPI001C396903 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA n=2 Tax=Paenibacillus TaxID=44249 RepID=UPI001C396903) HSP 1 Score: 70.5 bits (171), Expect = 6.300e-10 Identity = 46/147 (31.29%), Postives = 67/147 (45.58%), Query Frame = 3
Query: 3 VQKRLRREMRAALSVADVLLAPTTPFPPFPSCGPPADPASLLLNDVLTVPISLTGVPAVSIPVATMPAARRTTPVVTNSSSSCGSDRGEXXXXXXXXXXXXXXAPGAEHCRLPLGMQIIGRPLGEAAILRVAHELESRLDFASQVPE 443
V+ ++R+ DV++ PT P F DP ++ LND+LT+P++L GVPA+S+P CG G LP+G+QIIG+PL E+ +LRVAH E + DF Q P+
Sbjct: 380 VRTLIKRDFDQVFEQYDVIIGPTVPTTAFKIGSQANDPLTMYLNDILTIPVNLAGVPAISVP--------------------CGFADG-----------------------LPIGLQIIGKPLDESTVLRVAHAYEQQTDFHKQRPQ 483
BLAST of mRNA_E-fasciculatus_F_contig1534.3750.1 vs. uniprot
Match: A0A1K1R0B6_9BACL (Glutamyl-tRNA(Gln) amidotransferase subunit A n=2 Tax=Paenibacillus TaxID=44249 RepID=A0A1K1R0B6_9BACL) HSP 1 Score: 69.7 bits (169), Expect = 1.140e-9 Identity = 46/147 (31.29%), Postives = 66/147 (44.90%), Query Frame = 3
Query: 3 VQKRLRREMRAALSVADVLLAPTTPFPPFPSCGPPADPASLLLNDVLTVPISLTGVPAVSIPVATMPAARRTTPVVTNSSSSCGSDRGEXXXXXXXXXXXXXXAPGAEHCRLPLGMQIIGRPLGEAAILRVAHELESRLDFASQVPE 443
V+ ++R+ DV++ PT P P F DP ++ LND+LT+P++L GVPA+S+P CG G LP+G+QIIG+ L EA +LR AH E R +F Q P+
Sbjct: 381 VRTLIKRDFDQVFENYDVVIGPTAPTPAFKIGSQTNDPLTMYLNDILTIPVNLAGVPAISVP--------------------CGMADG-----------------------LPVGLQIIGKALDEATVLRAAHAFEQRTEFHKQRPQ 484
BLAST of mRNA_E-fasciculatus_F_contig1534.3750.1 vs. uniprot
Match: A0A5D6Y1X3_9STRA (Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1X3_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.220e-9 Identity = 56/157 (35.67%), Postives = 75/157 (47.77%), Query Frame = 3
Query: 3 VQKRLRREMRAALSV--ADVLLAPTTPFPPFPSCGP--PADPASLLLNDVLTVPISLTGVPAVSIPVATMPAARRTTPVVTNSSSSCGSDRGEXXXXXXXXXXXXXXAPGAEHCRLPLGMQIIGRPLGEAAILRVAHELESRLDFASQVPERVREPR 461
V++++R + A DVLL PTTP PF DP ++ LNDV+T+P ++ GVPA+SIP S +S G +H PLG+Q++G EA +LRVAH LE R DFAS +P RV E R
Sbjct: 426 VRQKIREDFENAFEAQGVDVLLTPTTPSGPFAVHNKLVKEDPVAMYLNDVMTIPANMAGVPAMSIPA---------------SLTSKG-----------------------DH---PLGLQLMGARRTEATVLRVAHALEQRADFASLIPSRVYESR 541
BLAST of mRNA_E-fasciculatus_F_contig1534.3750.1 vs. uniprot
Match: A0A2V6WE86_9BACT (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A (Fragment) n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6WE86_9BACT) HSP 1 Score: 67.0 bits (162), Expect = 2.320e-9 Identity = 50/147 (34.01%), Postives = 72/147 (48.98%), Query Frame = 3
Query: 3 VQKRLRREMRAALSVADVLLAPTTPFPPFPSCGPPADPASLLLNDVLTVPISLTGVPAVSIPVATMPAARRTTPVVTNSSSSCGSDRGEXXXXXXXXXXXXXXAPGAEHCRLPLGMQIIGRPLGEAAILRVAHELESRLDFASQVPE 443
V+ +RR+ AA + ++++APTTP PF G ADP S+ LNDVLT+P ++G+PA+S+P CG A G LP+G+Q+IGR L EA +LR A E D+ ++ PE
Sbjct: 129 VRTLVRRDFDAAFARVNLIVAPTTPNVPFKH-GEKADPISMYLNDVLTIPADMSGMPAISVP--------------------CG-----------------FTASG-----LPIGLQLIGRALDEATVLRAARAYERATDWHTRHPE 232
BLAST of mRNA_E-fasciculatus_F_contig1534.3750.1 vs. uniprot
Match: UPI00200BDA3B (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA n=1 Tax=Paenibacillus sp. YIM B00624 TaxID=2936508 RepID=UPI00200BDA3B) HSP 1 Score: 68.6 bits (166), Expect = 2.740e-9 Identity = 44/146 (30.14%), Postives = 66/146 (45.21%), Query Frame = 3
Query: 3 VQKRLRREMRAALSVADVLLAPTTPFPPFPSCGPPADPASLLLNDVLTVPISLTGVPAVSIPVATMPAARRTTPVVTNSSSSCGSDRGEXXXXXXXXXXXXXXAPGAEHCRLPLGMQIIGRPLGEAAILRVAHELESRLDFASQVP 440
V+ ++++ + DV++ PT P P F DP ++ LND+LT+P++L GVPA+S+P CG G +P+G+QIIG+PL E+ +LR AH E DF Q P
Sbjct: 380 VRTLIKQDFDNVFAKYDVIVGPTAPTPAFKIGSQTKDPLTMYLNDILTIPVNLAGVPAISVP--------------------CGFADG-----------------------MPVGLQIIGKPLDESTVLRAAHAYEQNTDFHKQRP 482
BLAST of mRNA_E-fasciculatus_F_contig1534.3750.1 vs. uniprot
Match: UPI00188DF29A (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA n=1 Tax=Thermaurantiacus tibetensis TaxID=2759035 RepID=UPI00188DF29A) HSP 1 Score: 68.2 bits (165), Expect = 3.730e-9 Identity = 47/138 (34.06%), Postives = 62/138 (44.93%), Query Frame = 3
Query: 3 VQKRLRREMRAALSVADVLLAPTTPFPPFPSCGPPADPASLLLNDVLTVPISLTGVPAVSIPVATMPAARRTTPVVTNSSSSCGSDRGEXXXXXXXXXXXXXXAPGAEHCRLPLGMQIIGRPLGEAAILRVAHELESR 416
V+ + R+ A + DVLL PT P FP ADP ++ LNDV TVP SL G+PA+S+P GA+ LPLG+Q+IGRPL E +L A+ LE+R
Sbjct: 386 VRALIARDFAEAFAACDVLLTPTAPTGAFPLGARNADPIAMYLNDVFTVPSSLAGLPAMSVPA------------------------------------------GADSAGLPLGLQLIGRPLDEGLVLDAAYALEAR 481
BLAST of mRNA_E-fasciculatus_F_contig1534.3750.1 vs. uniprot
Match: A0A090YFW1_PAEMA (Glutamyl-tRNA(Gln) amidotransferase subunit A n=12 Tax=Paenibacillus TaxID=44249 RepID=A0A090YFW1_PAEMA) HSP 1 Score: 67.4 bits (163), Expect = 6.630e-9 Identity = 44/140 (31.43%), Postives = 65/140 (46.43%), Query Frame = 3
Query: 3 VQKRLRREMRAALSVADVLLAPTTPFPPFPSCGPPADPASLLLNDVLTVPISLTGVPAVSIPVATMPAARRTTPVVTNSSSSCGSDRGEXXXXXXXXXXXXXXAPGAEHCRLPLGMQIIGRPLGEAAILRVAHELESRLD 422
V+ ++++ + DV++ PT P FP DP ++ LND+LT+P+SL GVPA+S+P CG G +P+G+QIIG+P E+AILRVAH E+ D
Sbjct: 380 VRTLIKQDFDQTFAKYDVIIGPTAPTTAFPLGSQVDDPLTMYLNDILTIPVSLAGVPALSVP--------------------CGFAEG-----------------------MPVGLQIIGKPFDESAILRVAHAFEANTD 476 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1534.3750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1534.3750.1 >prot_E-fasciculatus_F_contig1534.3750.1 ID=prot_E-fasciculatus_F_contig1534.3750.1|Name=mRNA_E-fasciculatus_F_contig1534.3750.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=152bp MRAALSVADVLLAPTTPFPPFPSCGPPADPASLLLNDVLTVPISLTGVPAback to top mRNA from alignment at E-fasciculatus_F_contig1534:328..2021+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1534.3750.1 ID=mRNA_E-fasciculatus_F_contig1534.3750.1|Name=mRNA_E-fasciculatus_F_contig1534.3750.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1694bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1534:328..2021+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1534:328..2021+ >mRNA_E-fasciculatus_F_contig1534.3750.1 ID=mRNA_E-fasciculatus_F_contig1534.3750.1|Name=mRNA_E-fasciculatus_F_contig1534.3750.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=912bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1534:328..2021+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |