mRNA_E-fasciculatus_F_contig15331.3747.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15331.3747.1
Unique NamemRNA_E-fasciculatus_F_contig15331.3747.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15331.3747.1 vs. uniprot
Match: D8LHE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE1_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 4.210e-69
Identity = 129/140 (92.14%), Postives = 135/140 (96.43%), Query Frame = 1 
Query:  811 GVENDEERAFREAGVNRVVEGLRAENTRLRQRLRSAERAAESGDDRANVEAERADALEAELSRVRVTVKGRVGALKAALEEAEEDADRAVAEKEGFMVQWEEDVDALRSQLGAERQAREDDRRDLESVIFDLEDEVDDLK 1230
            G ENDEERAFREAGVNRVV+GLRAENTRLRQRLRSAERA+ESG+DRANVEAERADALEAEL RVR TVKGRV ALKAALEEAEEDADRAVAEKEGFMVQWEEDVDALR+QLGAER+ARE+DRRDLESVIFDLEDEVD LK
Sbjct:   22 GNENDEERAFREAGVNRVVQGLRAENTRLRQRLRSAERASESGEDRANVEAERADALEAELGRVRATVKGRVRALKAALEEAEEDADRAVAEKEGFMVQWEEDVDALRNQLGAERKAREEDRRDLESVIFDLEDEVDGLK 161
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BLAST of mRNA_E-fasciculatus_F_contig15331.3747.1 vs. uniprot
Match: A0A6H5KCM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM1_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 5.430e-45
Identity = 102/139 (73.38%), Postives = 113/139 (81.29%), Query Frame = 1 
Query:  814 VENDEERAFREAGVNRVVEGLRAENTRLRQRLRSAERAAESGDDRANVEAERADALEAELSRVRVTVKGRVGALKAALEEAEEDADRAVAEKEGFMVQWEEDVDALRSQLGAERQAREDDRRDLESVIFDLEDEVDDLK 1230
            V+NDEERAFREAGV+RVVEGLRAENTR+R+RLRSAERAAESG+DRA VEAERADALE EL R                       DRAVAEKEGFM+QWE+DVDALR+QLGAER+AR++DRRDLESVIFDLEDEVDDLK
Sbjct:  483 VKNDEERAFREAGVHRVVEGLRAENTRVRERLRSAERAAESGEDRAKVEAERADALEEELGRXXXXXXXXXXXXXXXXXXXXXXXDRAVAEKEGFMIQWEQDVDALRNQLGAERKARQEDRRDLESVIFDLEDEVDDLK 621
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15331.3747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHE1_ECTSI4.210e-6992.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCM1_9PHAE5.430e-4573.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15331contigE-fasciculatus_F_contig15331:456..3045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1230
Cds size1230
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15331.3747.1prot_E-fasciculatus_F_contig15331.3747.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15331 456..3045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928011.5149477-CDS-E-fasciculatus_F_contig15331:455..6121622928011.5149477-CDS-E-fasciculatus_F_contig15331:455..612Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15331 456..612 -
1695995787.910062-CDS-E-fasciculatus_F_contig15331:455..6121695995787.910062-CDS-E-fasciculatus_F_contig15331:455..612Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15331 456..612 -
1622928011.53254-CDS-E-fasciculatus_F_contig15331:1173..12911622928011.53254-CDS-E-fasciculatus_F_contig15331:1173..1291Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15331 1174..1291 -
1695995787.9207237-CDS-E-fasciculatus_F_contig15331:1173..12911695995787.9207237-CDS-E-fasciculatus_F_contig15331:1173..1291Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15331 1174..1291 -
1622928011.5458136-CDS-E-fasciculatus_F_contig15331:2090..30451622928011.5458136-CDS-E-fasciculatus_F_contig15331:2090..3045Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15331 2091..3045 -
1695995787.931653-CDS-E-fasciculatus_F_contig15331:2090..30451695995787.931653-CDS-E-fasciculatus_F_contig15331:2090..3045Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15331 2091..3045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15331.3747.1

>prot_E-fasciculatus_F_contig15331.3747.1 ID=prot_E-fasciculatus_F_contig15331.3747.1|Name=mRNA_E-fasciculatus_F_contig15331.3747.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=410bp
LTPQVVKTRARETDLRRANAALLESTTASSALEAPPSSSSSSSELEANAA
KQNAAERATTASLPGSATTGYSSQQQQQQQQQQDGDEEKNSGGDAAGVVE
SLRRDNAALRRELEALSAAAGGGGGRDASPVSPPPFGGSVETRGFGWGVP
GRDGGGGGGRRGGSFLPWLLASAGGGGVVAPARPGVAADAVVVDAVVNGG
SGGGSVTPDGGDGAVEADGAGEAEADDSSSSSSSGSSSEIGGASSSQSSK
QTITPPPPAAAAAAAAAATTGVENDEERAFREAGVNRVVEGLRAENTRLR
QRLRSAERAAESGDDRANVEAERADALEAELSRVRVTVKGRVGALKAALE
EAEEDADRAVAEKEGFMVQWEEDVDALRSQLGAERQAREDDRRDLESVIF
DLEDEVDDLK
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mRNA from alignment at E-fasciculatus_F_contig15331:456..3045-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15331.3747.1 ID=mRNA_E-fasciculatus_F_contig15331.3747.1|Name=mRNA_E-fasciculatus_F_contig15331.3747.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2590bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15331:456..3045- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCACGCCTCAGGTTGTCAAGACCCGGGCGAGGGAGACAGACCTCCGTCG
GGCGAACGCCGCTCTCTTGGAAAGTACCACCGCTTCTTCTGCCCTGGAGG
CGCCGCCGTCGTCGTCGTCGTCGTCGTCGGAGCTGGAGGCAAACGCCGCA
AAACAAAACGCGGCGGAACGTGCTACCACTGCTTCGCTACCCGGCAGTGC
TACGACCGGCTACTCCTCCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGG
ATGGTGATGAGGAGAAGAACAGTGGTGGTGATGCTGCCGGCGTTGTCGAG
TCTCTGCGGAGGGATAACGCCGCCCTGCGCAGGGAGCTGGAGGCGTTATC
TGCCGCCGCCGGCGGGGGAGGGGGCAGAGACGCGTCTCCCGTGTCCCCCC
CTCCGTTCGGCGGCAGCGTTGAAACCCGGGGATTTGGCTGGGGCGTCCCC
GGGAGGGATGGAGGGGGCGGCGGAGGCCGTCGAGGTGGGTCTTTTTTACC
GTGGTTGCTTGCTAGCGCCGGGGGAGGGGGTGTTGTTGCTCCTGCTCGGC
CTGGTGTTGCGGCAGACGCTGTTGTTGTCGACGCCGTGGTTAACGGCGGC
AGCGGGGGCGGCAGTGTCACCCCGGATGGTGGTGATGGTGCTGTCGAGGC
AGACGGCGCCGGCGAAGCCGAGGCTGACGACAGCAGCAGCAGCAGCAGCA
GCGGTAGCAGCAGCGAGATCGGCGGGGCATCATCATCGCAGTCATCGAAA
CAAACGATAACGCCTCCTCCTCCTGCTGCTGCTGCTGCTGCTGCTGCGGC
GGCGACGACGGGCGTCGAGAACGACGAGGAGAGGGCGTTCAGGGAAGCCG
GCGTGAACAGGGTGGTGGAGGGACTGAGAGCGGAGAACACGAGGCTGCGC
CAGCGGTTGCGGTCGGCGGAGCGCGCCGCGGAGTCGGGGGATGATCGGGC
CAACGGTGAGATACAACGACAAAATAATGCAGGATTTACTATGACACACT
TAATCCTATATAATATCGATATATATGTTGGATTTAATATGGCACAATGT
ATACTTTACAACAACGGGGGATGATTGAGCCAACGAGGAGATGCAGAACG
ATATATATAGGATTTAGTATAACACACTAAATCCTACACAATATCGATAT
ATATATAGGATTTAATATGGACTTTACAATAACGGGGGATGATTGGGCCA
ACGATGAGATGCAGAACGATATATATAGGATTTAGTATAACACACTAAAT
CCTACACAATATCGATATATTATATAGGATTTAATATTTCACACTAAATC
CTACACAATATCTATGTACAGTAACTGTTCTTATCGCTACGATCATGCAT
ACTTTTACACAGTAAGGATATATGTATAGGATTTACTATGGCACAATCAG
ATCGTATACAATATCGGTATATATAGGATTTAGCATGACACACTAAATCC
TACACAACATCTGGATGTACGGTAGCTGTTCTTTCGCTACGATCATGCGA
ACGATATATATAGGATTTAATATAGCACACTAAATCCTACACAATATCAG
TAGGTACAGTAGCTGCTCTCATCGCTACGATCATGCATACTTTTACGCAG
TAAGGATATATGTATAGGATTTACTATGACGCAATCAGATCGTATACAAA
ATCGGTATATATAGGATTTAGTATGACACACTAAATCCTACACAATATAT
AGTATGTACAGCAACTGTTCTCATCGCCATAATCATGATACTTTTATCAA
ACAGTGGAGGCGGAGAGGGCTGATGCCCTGGAGGCAGAGCTGAGTCGAGT
TCGGGTTACCGTGAAGGGGAGAGTCGGGGCACTCAAGGCGGCTCTGGAAG
AGGCGGAGGAGGACGCAGATAGGTATGTAAGATCGAGGGGGGGGGGTACT
CGTGCCCCGGGAGGGTCCATTGCATAGGTAGTAGAAGCCTATGTACCGTA
TTGAATTAGTAGGATTTAGTGGGGTATAGAAAAGCATACATATATTCTAT
ATCCTCAATGTGTACTGGTAGGATTGTGAGATGATGTAAAGTGGGAGGGT
CCTAAAGACGGCCCTGGAAGAGGCGGAGGAAGACGCAGATGGGTCAGATC
GAGTGAGGATCTATCTAAATATAATCGGATTTTGTGTGGTATGGTCAGGC
TTGTACTTGTATATCGTTGTTGTATGCCTGGTAGGATTTTGTGTGGCATA
GTAAATCGTATATATCCTCATCGTATTCTGGTAGGATTTAGTATATTTCG
GAGTATTTGTAAAGTGGGAAGGGTCAGGGCACTTATGAGTATGACCCCCC
TGATGCTGTTCCTTCTCTGTGCTCGACAGGGCTGTCGCTGAGAAGGAGGG
GTTCATGGTCCAGTGGAAGGAGAACTCATGAGTACCCCGCCCCCCCCCGC
CCATTGTTGTTATTATTTCGTTGTGCTCGACAGGGCTGTCGCCGAGAAGG
AGGGGTTCATGGTCCAGTGGGAGGAGGACGTGGACGCGCTTCGAAGTCAG
CTCGGTGCGGAGAGGCAGGCGCGGGAGGACGACCGCCGGGATCTCGAGAG
CGTCATCTTCGACTTGGAGGACGAAGTTGACGACCTAAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15331:456..3045-

>mRNA_E-fasciculatus_F_contig15331.3747.1 ID=mRNA_E-fasciculatus_F_contig15331.3747.1|Name=mRNA_E-fasciculatus_F_contig15331.3747.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2460bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15331:456..3045- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCACGCCTCAGGTTGTCAAGACCCGGGCGAGGGAGACAGACCTCCGTCG
GGCGAACGCCGCTCTCTTGGAAAGTACCACCGCTTCTTCTGCCCTGGAGG
CGCCGCCGTCGTCGTCGTCGTCGTCGTCGGAGCTGGAGGCAAACGCCGCA
AAACAAAACGCGGCGGAACGTGCTACCACTGCTTCGCTACCCGGCAGTGC
TACGACCGGCTACTCCTCCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGG
ATGGTGATGAGGAGAAGAACAGTGGTGGTGATGCTGCCGGCGTTGTCGAG
TCTCTGCGGAGGGATAACGCCGCCCTGCGCAGGGAGCTGGAGGCGTTATC
TGCCGCCGCCGGCGGGGGAGGGGGCAGAGACGCGTCTCCCGTGTCCCCCC
CTCCGTTCGGCGGCAGCGTTGAAACCCGGGGATTTGGCTGGGGCGTCCCC
GGGAGGGATGGAGGGGGCGGCGGAGGCCGTCGAGGTGGGTCTTTTTTACC
GTGGTTGCTTGCTAGCGCCGGGGGAGGGGGTGTTGTTGCTCCTGCTCGGC
CTGGTGTTGCGGCAGACGCTGTTGTTGTCGACGCCGTGGTTAACGGCGGC
AGCGGGGGCGGCAGTGTCACCCCGGATGGTGGTGATGGTGCTGTCGAGGC
AGACGGCGCCGGCGAAGCCGAGGCTGACGACAGCAGCAGCAGCAGCAGCA
GCGGTAGCAGCAGCGAGATCGGCGGGGCATCATCATCGCAGTCATCGAAA
CAAACGATAACGCCTCCTCCTCCTGCTGCTGCTGCTGCTGCTGCTGCGGC
GGCGACGACGGGCGTCGAGAACGACGAGGAGAGGGCGTTCAGGGAAGCCG
GCGTGAACAGGGTGGTGGAGGGACTGAGAGCGGAGAACACGAGGCTGCGC
CAGCGGTTGCGGTCGGCGGAGCGCGCCGCGGAGTCGGGGGATGATCGGGC
CAACGCTCACGCCTCAGGTTGTCAAGACCCGGGCGAGGGAGACAGACCTC
CGTCGGGCGAACGCCGCTCTCTTGGAAAGTACCACCGCTTCTTCTGCCCT
GGAGGCGCCGCCGTCGTCGTCGTCGTCGTCGTCGGAGCTGGAGGCAAACG
CCGCAAAACAAAACGCGGCGGAACGTGCTACCACTGCTTCGCTACCCGGC
AGTGCTACGACCGGCTACTCCTCCCAACAGCAGCAGCAGCAGCAGCAGCA
GCAGGATGGTGATGAGGAGAAGAACAGTGGTGGTGATGCTGCCGGCGTTG
TCGAGTCTCTGCGGAGGGATAACGCCGCCCTGCGCAGGGAGCTGGAGGCG
TTATCTGCCGCCGCCGGCGGGGGAGGGGGCAGAGACGCGTCTCCCGTGTC
CCCCCCTCCGTTCGGCGGCAGCGTTGAAACCCGGGGATTTGGCTGGGGCG
TCCCCGGGAGGGATGGAGGGGGCGGCGGAGGCCGTCGAGGTGGGTCTTTT
TTACCGTGGTTGCTTGCTAGCGCCGGGGGAGGGGGTGTTGTTGCTCCTGC
TCGGCCTGGTGTTGCGGCAGACGCTGTTGTTGTCGACGCCGTGGTTAACG
GCGGCAGCGGGGGCGGCAGTGTCACCCCGGATGGTGGTGATGGTGCTGTC
GAGGCAGACGGCGCCGGCGAAGCCGAGGCTGACGACAGCAGCAGCAGCAG
CAGCAGCGGTAGCAGCAGCGAGATCGGCGGGGCATCATCATCGCAGTCAT
CGAAACAAACGATAACGCCTCCTCCTCCTGCTGCTGCTGCTGCTGCTGCT
GCGGCGGCGACGACGGGCGTCGAGAACGACGAGGAGAGGGCGTTCAGGGA
AGCCGGCGTGAACAGGGTGGTGGAGGGACTGAGAGCGGAGAACACGAGGC
TGCGCCAGCGGTTGCGGTCGGCGGAGCGCGCCGCGGAGTCGGGGGATGAT
CGGGCCAACGTGGAGGCGGAGAGGGCTGATGCCCTGGAGGCAGAGCTGAG
TCGAGTTCGGGTTACCGTGAAGGGGAGAGTCGGGGCACTCAAGGCGGCTC
TGGAAGAGGCGGAGGAGGACGCAGATAGTGGAGGCGGAGAGGGCTGATGC
CCTGGAGGCAGAGCTGAGTCGAGTTCGGGTTACCGTGAAGGGGAGAGTCG
GGGCACTCAAGGCGGCTCTGGAAGAGGCGGAGGAGGACGCAGATAGGGCT
GTCGCCGAGAAGGAGGGGTTCATGGTCCAGTGGGAGGAGGACGTGGACGC
GCTTCGAAGTCAGCTCGGTGCGGAGAGGCAGGCGCGGGAGGACGACCGCC
GGGATCTCGAGAGCGTCATCTTCGACTTGGAGGACGAAGTTGACGACCTA
AAGGGCTGTCGCCGAGAAGGAGGGGTTCATGGTCCAGTGGGAGGAGGACG
TGGACGCGCTTCGAAGTCAGCTCGGTGCGGAGAGGCAGGCGCGGGAGGAC
GACCGCCGGGATCTCGAGAGCGTCATCTTCGACTTGGAGGACGAAGTTGA
CGACCTAAAG
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