mRNA_E-fasciculatus_F_contig15330.3746.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15330.3746.1
Unique NamemRNA_E-fasciculatus_F_contig15330.3746.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15330.3746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15330contigE-fasciculatus_F_contig15330:1050..1904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size855
Cds size855
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928011.4679344-CDS-E-fasciculatus_F_contig15330:1049..19041622928011.4679344-CDS-E-fasciculatus_F_contig15330:1049..1904Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15330 1050..1904 +
1695995787.9020174-CDS-E-fasciculatus_F_contig15330:1049..19041695995787.9020174-CDS-E-fasciculatus_F_contig15330:1049..1904Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15330 1050..1904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15330.3746.1prot_E-fasciculatus_F_contig15330.3746.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15330 1050..1904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15330.3746.1

>prot_E-fasciculatus_F_contig15330.3746.1 ID=prot_E-fasciculatus_F_contig15330.3746.1|Name=mRNA_E-fasciculatus_F_contig15330.3746.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=285bp
VETRSSRVPLIDHRSGSQPKRIEQHVLYVSRRRRCVVPFRCAHTYTLVVS
QLCPIKCCHPLVHCFRRTRTCASHPSRSRSNTKQSGNMRTSMKETQRTVG
INSSTKPCSKPTYESYPRPKQWGRGAPHPRKRLRLSLASGPRLHAPASTV
LKYIPTWLRSCHLGNPQKQHWNWSKQATSCTPNNDGGDIPMPMYNRCGRQ
HIAAQESTDPDTQHCNSLPKTRLRQATTLVILLHTSTKTWTTQNMEDHAT
SYKNIHNHRKAPSKGFPRIITGAHKKKRPASLPSA
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mRNA from alignment at E-fasciculatus_F_contig15330:1050..1904+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15330.3746.1 ID=mRNA_E-fasciculatus_F_contig15330.3746.1|Name=mRNA_E-fasciculatus_F_contig15330.3746.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=855bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15330:1050..1904+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCGAAACAAGGTCATCGCGTGTGCCGCTGATCGACCATCGGTCCGGTTC
CCAACCTAAAAGGATTGAACAACATGTTCTTTACGTGTCGCGGCGTCGTC
GTTGTGTCGTGCCATTCCGATGTGCACATACATACACGCTGGTTGTCTCC
CAGCTTTGTCCGATCAAATGCTGCCATCCTCTGGTCCATTGCTTTAGAAG
GACACGGACGTGTGCATCGCACCCGTCGCGAAGTCGAAGCAACACCAAAC
AAAGTGGTAACATGCGCACATCCATGAAAGAAACGCAACGTACTGTAGGT
ATAAATAGTAGCACCAAGCCATGTTCTAAGCCCACTTATGAGTCTTACCC
CCGGCCCAAACAGTGGGGCAGAGGAGCACCGCACCCCCGAAAACGTTTGC
GTTTGAGTCTCGCCTCCGGTCCTCGCTTACACGCTCCAGCATCGACCGTT
CTAAAATATATTCCTACATGGCTTCGTTCATGCCATCTTGGGAACCCCCA
AAAACAACATTGGAATTGGTCAAAACAAGCAACGTCATGCACACCCAACA
ATGACGGTGGCGACATCCCCATGCCAATGTACAACCGATGCGGGAGACAA
CACATTGCCGCTCAAGAGAGCACCGATCCAGACACACAGCACTGCAATTC
ACTACCAAAAACACGCCTTCGTCAGGCTACTACTTTAGTCATACTACTGC
ACACCTCCACAAAAACTTGGACGACACAAAATATGGAAGATCATGCGACT
TCATATAAAAATATTCATAACCACCGCAAAGCACCATCGAAGGGATTCCC
TCGCATAATTACCGGGGCACATAAAAAAAAAAGACCAGCATCGCTACCAA
GCGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15330:1050..1904+

>mRNA_E-fasciculatus_F_contig15330.3746.1 ID=mRNA_E-fasciculatus_F_contig15330.3746.1|Name=mRNA_E-fasciculatus_F_contig15330.3746.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1710bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15330:1050..1904+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCGAAACAAGGTCATCGCGTGTGCCGCTGATCGACCATCGGTCCGGTTC
CCAACCTAAAAGGATTGAACAACATGTTCTTTACGTGTCGCGGCGTCGTC
GTTGTGTCGTGCCATTCCGATGTGCACATACATACACGCTGGTTGTCTCC
CAGCTTTGTCCGATCAAATGCTGCCATCCTCTGGTCCATTGCTTTAGAAG
GACACGGACGTGTGCATCGCACCCGTCGCGAAGTCGAAGCAACACCAAAC
AAAGTGGTAACATGCGCACATCCATGAAAGAAACGCAACGTACTGTAGGT
ATAAATAGTAGCACCAAGCCATGTTCTAAGCCCACTTATGAGTCTTACCC
CCGGCCCAAACAGTGGGGCAGAGGAGCACCGCACCCCCGAAAACGTTTGC
GTTTGAGTCTCGCCTCCGGTCCTCGCTTACACGCTCCAGCATCGACCGTT
CTAAAATATATTCCTACATGGCTTCGTTCATGCCATCTTGGGAACCCCCA
AAAACAACATTGGAATTGGTCAAAACAAGCAACGTCATGCACACCCAACA
ATGACGGTGGCGACATCCCCATGCCAATGTACAACCGATGCGGGAGACAA
CACATTGCCGCTCAAGAGAGCACCGATCCAGACACACAGCACTGCAATTC
ACTACCAAAAACACGCCTTCGTCAGGCTACTACTTTAGTCATACTACTGC
ACACCTCCACAAAAACTTGGACGACACAAAATATGGAAGATCATGCGACT
TCATATAAAAATATTCATAACCACCGCAAAGCACCATCGAAGGGATTCCC
TCGCATAATTACCGGGGCACATAAAAAAAAAAGACCAGCATCGCTACCAA
GCGCCGTCGAAACAAGGTCATCGCGTGTGCCGCTGATCGACCATCGGTCC
GGTTCCCAACCTAAAAGGATTGAACAACATGTTCTTTACGTGTCGCGGCG
TCGTCGTTGTGTCGTGCCATTCCGATGTGCACATACATACACGCTGGTTG
TCTCCCAGCTTTGTCCGATCAAATGCTGCCATCCTCTGGTCCATTGCTTT
AGAAGGACACGGACGTGTGCATCGCACCCGTCGCGAAGTCGAAGCAACAC
CAAACAAAGTGGTAACATGCGCACATCCATGAAAGAAACGCAACGTACTG
TAGGTATAAATAGTAGCACCAAGCCATGTTCTAAGCCCACTTATGAGTCT
TACCCCCGGCCCAAACAGTGGGGCAGAGGAGCACCGCACCCCCGAAAACG
TTTGCGTTTGAGTCTCGCCTCCGGTCCTCGCTTACACGCTCCAGCATCGA
CCGTTCTAAAATATATTCCTACATGGCTTCGTTCATGCCATCTTGGGAAC
CCCCAAAAACAACATTGGAATTGGTCAAAACAAGCAACGTCATGCACACC
CAACAATGACGGTGGCGACATCCCCATGCCAATGTACAACCGATGCGGGA
GACAACACATTGCCGCTCAAGAGAGCACCGATCCAGACACACAGCACTGC
AATTCACTACCAAAAACACGCCTTCGTCAGGCTACTACTTTAGTCATACT
ACTGCACACCTCCACAAAAACTTGGACGACACAAAATATGGAAGATCATG
CGACTTCATATAAAAATATTCATAACCACCGCAAAGCACCATCGAAGGGA
TTCCCTCGCATAATTACCGGGGCACATAAAAAAAAAAGACCAGCATCGCT
ACCAAGCGCC
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