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Homology
BLAST of mRNA_E-fasciculatus_F_contig1532.3742.1 vs. uniprot
Match: D7G7J7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J7_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 6.240e-19 Identity = 50/77 (64.94%), Postives = 55/77 (71.43%), Query Frame = 0
Query: 2 VNECLDLDIGRCTFESSDELDLYNCGITDDDVMAGDLQACFENFGENNIHVLELSYNDVTTLPAGMFDSLVALTELH 78
VN CLDLD GRCTF S LDL C ITDDDV+AGDL ACFENFGENNI YN++ TLP +FDSL LTE +
Sbjct: 2 VNSCLDLDTGRCTFSSRSNLDLGWCDITDDDVVAGDLTACFENFGENNIQNF---YNELETLPERLFDSLNLLTEAY 75
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR003591 | Leucine-rich repeat, typical subtype | SMART | SM00369 | LRR_typ_2 | coord: 169..190
e-value: 150.0
score: 3.7
coord: 239..262
e-value: 8.2E-6
score: 35.3
coord: 143..166
e-value: 5.8E-5
score: 32.5
coord: 289..310
e-value: 6.0
score: 15.1
coord: 49..70
e-value: 65.0
score: 6.6
coord: 311..334
e-value: 3.1E-4
score: 30.1
coord: 119..142
e-value: 6.4E-5
score: 32.4
coord: 95..118
e-value: 8.8E-5
score: 31.9
coord: 263..286
e-value: 0.0013
score: 28.0
coord: 215..238
e-value: 0.0091
score: 25.2
coord: 337..359
e-value: 2.2
score: 17.2
coord: 191..214
e-value: 1.1E-4
score: 31.6
coord: 71..94
e-value: 2.6E-4
score: 30.3 |
| None | No IPR available | SMART | SM00364 | LRR_bac_2 | coord: 263..282
e-value: 97.0
score: 6.2
coord: 287..306
e-value: 100.0
score: 6.1
coord: 119..138
e-value: 98.0
score: 6.1
coord: 215..234
e-value: 56.0
score: 8.0
coord: 239..258
e-value: 25.0
score: 10.7
coord: 336..355
e-value: 24.0
score: 10.8
coord: 167..186
e-value: 590.0
score: 0.2
coord: 95..114
e-value: 17.0
score: 12.0
coord: 191..210
e-value: 90.0
score: 6.4
coord: 71..90
e-value: 36.0
score: 9.5
coord: 143..162
e-value: 13.0
score: 12.9
coord: 311..330
e-value: 14.0
score: 12.5 |
| None | No IPR available | PANTHER | PTHR45617 | FAMILY NOT NAMED | coord: 154..266
coord: 46..164 |
| None | No IPR available | PANTHER | PTHR45617:SF60 | SI:CH211-117L17.7-RELATED | coord: 46..164 |
| None | No IPR available | PANTHER | PTHR45617 | FAMILY NOT NAMED | coord: 206..332
coord: 274..369 |
| None | No IPR available | PANTHER | PTHR45617 | FAMILY NOT NAMED | coord: 106..212 |
| None | No IPR available | PANTHER | PTHR45617:SF60 | SI:CH211-117L17.7-RELATED | coord: 106..212 |
| None | No IPR available | PANTHER | PTHR45617:SF60 | SI:CH211-117L17.7-RELATED | coord: 154..266
coord: 206..332
coord: 274..369 |
| None | No IPR available | SUPERFAMILY | 52058 | L domain-like | coord: 21..370 |
| IPR032675 | Leucine-rich repeat domain superfamily | GENE3D | 3.80.10.10 | | coord: 169..246
e-value: 1.9E-20
score: 74.7 |
| IPR032675 | Leucine-rich repeat domain superfamily | GENE3D | 3.80.10.10 | | coord: 247..378
e-value: 6.9E-36
score: 125.2 |
| IPR032675 | Leucine-rich repeat domain superfamily | GENE3D | 3.80.10.10 | | coord: 3..168
e-value: 2.5E-38
score: 133.2 |
| IPR001611 | Leucine-rich repeat | PFAM | PF13855 | LRR_8 | coord: 219..276
e-value: 9.7E-14
score: 50.9
coord: 312..370
e-value: 6.5E-12
score: 45.0
coord: 74..132
e-value: 1.3E-15
score: 56.9 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_E-fasciculatus_F_contig1532.3742.1 ID=prot_E-fasciculatus_F_contig1532.3742.1|Name=mRNA_E-fasciculatus_F_contig1532.3742.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=382bp
AVNECLDLDIGRCTFESSDELDLYNCGITDDDVMAGDLQACFENFGENNI
HVLELSYNDVTTLPAGMFDSLVALTELHLRHNPLTALPVGTFGSLPALKE
LTLYSNELTTLPAGIFDNLPALTELDLHLNALTELPAGIFASLPALTELD
LTYNALTTLPAGMFGSDNQLTSIGLLGNSLSELPVGVFDHLVLLTELDLR
HNALTALPAGIFDSLVAITELSLYSNELTTLPAGIFDNLPALTELDLNQN
ALTELPAGIFASLPALTEVDLTYNALTTLPAGMFGSDNQLTSMNLSDNAL
TALPAGIFDSLPALTKLSLSANNLETLPDGLFVSDHQHLTSMDLSYNDLT
TLPAGIFDSLVAMTTLYVSHRTQRTERMDLM* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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