mRNA_E-fasciculatus_F_contig1532.3742.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1532.3742.1 vs. uniprot
Match: D7G7J7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J7_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 6.240e-19 Identity = 50/77 (64.94%), Postives = 55/77 (71.43%), Query Frame = 1
Query: 4 VNECLDLDIGRCTFESSDELDLYNCGITDDDVMAGDLQACFENFGENNIHVLELSYNDVTTLPAGMFDSLVALTELH 234
VN CLDLD GRCTF S LDL C ITDDDV+AGDL ACFENFGENNI YN++ TLP +FDSL LTE +
Sbjct: 2 VNSCLDLDTGRCTFSSRSNLDLGWCDITDDDVVAGDLTACFENFGENNIQNF---YNELETLPERLFDSLNLLTEAY 75
BLAST of mRNA_E-fasciculatus_F_contig1532.3742.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 4.640e-5 Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 1
Query: 4 VNECLDL--DIGRC--TFESSDELDLYNCGITDDDVMAGDLQACFENFGENNIHVLELSYND-VTTLPAGMFDSLVALTEL 231
+N C D D RC + + +DL NC D D A DL ACFE+FG+ +I L L+++D +TTLPAG+F+ L + ++
Sbjct: 355 INPCFDSTNDDYRCQPSVDQPAYIDLNNCNFVDSD--AADLPACFESFGKTDIETLHLTFHDDLTTLPAGVFEGLENVVDM 433 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1532.3742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1532.3742.1 >prot_E-fasciculatus_F_contig1532.3742.1 ID=prot_E-fasciculatus_F_contig1532.3742.1|Name=mRNA_E-fasciculatus_F_contig1532.3742.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=382bp AVNECLDLDIGRCTFESSDELDLYNCGITDDDVMAGDLQACFENFGENNIback to top mRNA from alignment at E-fasciculatus_F_contig1532:177..13119- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1532.3742.1 ID=mRNA_E-fasciculatus_F_contig1532.3742.1|Name=mRNA_E-fasciculatus_F_contig1532.3742.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=12943bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1532:177..13119- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1532:177..13119- >mRNA_E-fasciculatus_F_contig1532.3742.1 ID=mRNA_E-fasciculatus_F_contig1532.3742.1|Name=mRNA_E-fasciculatus_F_contig1532.3742.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2292bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1532:177..13119- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |