mRNA_E-fasciculatus_F_contig15317.3741.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15317.3741.1
Unique NamemRNA_E-fasciculatus_F_contig15317.3741.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15317.3741.1 vs. uniprot
Match: D7FMR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR0_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.100e-73
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 1 
Query:    1 FTRAELEELEAEEEGTGRPGKRQGTRSSSVAGQSNAGNGAAWDGTPAAAQGADSATQLELLSAAEGELRIAFDAHMKYLSEVEEAKRAEMAAFQRAGEAALQNMERSRKATTDDGLRLHKAFLNQRQRITRLRME 405
            FTRAELEELEAEEEGTGRPGKRQGTRSSSVAGQS+AGNGA WDGTPAAAQGADSATQLELLSAAEGELR+AFDAHMKYLSEVEEAKRAEMAAFQRAGEAALQNMERSRKATTDDGLRLHKAFLNQRQRITRLRME
Sbjct:  204 FTRAELEELEAEEEGTGRPGKRQGTRSSSVAGQSHAGNGAVWDGTPAAAQGADSATQLELLSAAEGELRVAFDAHMKYLSEVEEAKRAEMAAFQRAGEAALQNMERSRKATTDDGLRLHKAFLNQRQRITRLRME 338
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15317.3741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMR0_ECTSI1.100e-7397.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15317contigE-fasciculatus_F_contig15317:639..2652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_001260.1
Exons4
Model size405
Cds size405
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15317.3741.1prot_E-fasciculatus_F_contig15317.3741.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15317 639..2652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928010.6854756-CDS-E-fasciculatus_F_contig15317:638..7551622928010.6854756-CDS-E-fasciculatus_F_contig15317:638..755Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15317 639..755 +
1695995787.592649-CDS-E-fasciculatus_F_contig15317:638..7551695995787.592649-CDS-E-fasciculatus_F_contig15317:638..755Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15317 639..755 +
1622928010.6997626-CDS-E-fasciculatus_F_contig15317:1179..13051622928010.6997626-CDS-E-fasciculatus_F_contig15317:1179..1305Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15317 1180..1305 +
1695995787.6038759-CDS-E-fasciculatus_F_contig15317:1179..13051695995787.6038759-CDS-E-fasciculatus_F_contig15317:1179..1305Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15317 1180..1305 +
1622928010.7141812-CDS-E-fasciculatus_F_contig15317:1927..20111622928010.7141812-CDS-E-fasciculatus_F_contig15317:1927..2011Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15317 1928..2011 +
1695995787.6125827-CDS-E-fasciculatus_F_contig15317:1927..20111695995787.6125827-CDS-E-fasciculatus_F_contig15317:1927..2011Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15317 1928..2011 +
1622928010.726697-CDS-E-fasciculatus_F_contig15317:2574..26521622928010.726697-CDS-E-fasciculatus_F_contig15317:2574..2652Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15317 2575..2652 +
1695995787.6221364-CDS-E-fasciculatus_F_contig15317:2574..26521695995787.6221364-CDS-E-fasciculatus_F_contig15317:2574..2652Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15317 2575..2652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15317.3741.1

>prot_E-fasciculatus_F_contig15317.3741.1 ID=prot_E-fasciculatus_F_contig15317.3741.1|Name=mRNA_E-fasciculatus_F_contig15317.3741.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=135bp
FTRAELEELEAEEEGTGRPGKRQGTRSSSVAGQSNAGNGAAWDGTPAAAQ
GADSATQLELLSAAEGELRIAFDAHMKYLSEVEEAKRAEMAAFQRAGEAA
LQNMERSRKATTDDGLRLHKAFLNQRQRITRLRME
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mRNA from alignment at E-fasciculatus_F_contig15317:639..2652+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15317.3741.1 ID=mRNA_E-fasciculatus_F_contig15317.3741.1|Name=mRNA_E-fasciculatus_F_contig15317.3741.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2014bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15317:639..2652+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCACTCGGGCAGAGCTGGAAGAGCTAGAGGCGGAGGAGGAGGGCACGGG
CAGGCCCGGCAAGCGCCAAGGGACCAGAAGCAGTTCGGTGGCAGGGCAAT
CAAACGCTGGAAACGGGGTGCGTAGCTTCTTCGGGTTGTTGTTGTTCCGG
ATACATAGTATTTTTTATTTGGAAAAAATCCATTGCTATTTGTCTATAGC
CCAGGCTCTATTTCCCTTGGAAAAAGAAATGAGTTCTTGTGTTGTGGAAG
AAATAAAGGACAAGCTTGTTATTCATTTCCGTCGAGAGCGTGTGCGGTGG
GGTGATCAAAAGACCTTTTTGTAGCAACCCATCACACAGCATTAATTGTG
TGCCCCCCGAAAGCCTGGTTCGGTGAGAACCCGGCGTGCTCCGTCCCGGC
TTTGTATTGTAGGGATAGGAGGTCAGTGGTCTAACGACTACGGCATGCAC
GACTATGAGTACTGGAGATACCACCCCCCCCCCTACCCCTGCCAAAAACA
TCAACTTTGTAGTTCTGCTGCCGCCGTGTTGTGTTATTTAGGCTGCCTGG
GATGGTACCCCGGCCGCTGCGCAGGGGGCGGACAGCGCAACGCAGCTAGA
GCTGCTGTCGGCCGCTGAGGGCGAGCTACGAATCGCCTTTGACGCGCACA
TGAAGTACCTCTCCGAGGTACGTTGTTCCTGTTGTTGTTTTTGGTGGTGG
TGGTGATACTGTTGTTGTTGTCTTCACATTTAAAAACCGTTCCGGTCCCT
GCTCAGTACTGTACCTTCTAATGTCCGTACTGGTTCAGTCCAACTGACGC
GGACGCCTTTCTTCCGTGGTCACTGTAATAGCCAACTGCCTCAAAGGGGG
TACACCTTTCTAGATGTCACAATAACGGCAGCATATTGATTTGACCCCAA
ACGTAGCTATTGTAGTGCCATTTCCTTTTCTGGTTGTTTCCTAGACGTTG
GCCCTTTCACCCTTTGCACTTGCTATTACTTGGTTTTGGAATAATTGTTC
CTGTTTTTCGTGGAATTTTTTTTTTTTTTTTTCGTGCATACCGGAGCGGA
GAGTATTTTTCTCCACGAGTAGAAGGAGGAATGGGGTTGCACGTTTTGCT
TCCGACGAGGGGTTCTCGTTCTCGTCCTCCTGTTTGGTTGTTAAACCCCC
CTCGTCGAGTCGATCATTTCTCCCATGACAGCAGTGTGTATCAACTTGTC
GTTACGCCCTGCGTGTGGTCATGATAACCAGTGGTTTTAGTTGCCGGCTT
GTGTGGACGTGTATCAACGTTTTTTTTTTTTTTTTTTAGGTGGAGGAGGC
GAAGAGGGCGGAAATGGCGGCGTTCCAACGAGCGGGGGAGGCGGCCTTGC
AAAACATGGAGCGGTCTCGCAAGGTACATATCTATGTACTAATGCGTGTT
TCATAGATAGCTATCTCGTTTCTGGCATATGATCTAAACTGATGAGGACA
GAATCCACGATGAGTTAGGCAGCATTTTTTGTTTTGTTTTGGTTGCTTTG
CCCACCGGTGACTTCTTGTTTTGGTGCCTCGATTTTGCTTTTTTCTAGCT
CACTGCTGTTTCACCACTCTCTCTCTCTCTCTCTCTCTTATTGTTCGTTC
TAACGATAACGATACGTCTGCCCCACAATTGAAGTTTCCAATCTCTGAGG
CAATGCTGAAGGACGTCCCGTGTTTCCATCTTGAATTCCTTCATGTTCAT
CTCTAGGCTAGGGTACTGTACCGAGGCAATGCTAAAGGATATGTCCATGT
TGAATATAGGGTACTGTACCGAGGCAATGCTAAAGGATATGTCCATGTTG
AATACCTTCATGTTGATCTCTAGGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCCTCTCTTGCTTGTTCTTGACCCTCTCGTTGCGCTTGCTACATTGA
CATTTACAATCGTTCCGACCTTTACTGTATATCCAGGCTACAACGGACGA
CGGGCTGCGGCTGCACAAGGCCTTCCTCAACCAGCGCCAGCGCATCACTC
GTCTCCGAATGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15317:639..2652+

>mRNA_E-fasciculatus_F_contig15317.3741.1 ID=mRNA_E-fasciculatus_F_contig15317.3741.1|Name=mRNA_E-fasciculatus_F_contig15317.3741.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=810bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15317:639..2652+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCACTCGGGCAGAGCTGGAAGAGCTAGAGGCGGAGGAGGAGGGCACGGG
CAGGCCCGGCAAGCGCCAAGGGACCAGAAGCAGTTCGGTGGCAGGGCAAT
CAAACGCTGGAAACGGGTTCACTCGGGCAGAGCTGGAAGAGCTAGAGGCG
GAGGAGGAGGGCACGGGCAGGCCCGGCAAGCGCCAAGGGACCAGAAGCAG
TTCGGTGGCAGGGCAATCAAACGCTGGAAACGGGGCTGCCTGGGATGGTA
CCCCGGCCGCTGCGCAGGGGGCGGACAGCGCAACGCAGCTAGAGCTGCTG
TCGGCCGCTGAGGGCGAGCTACGAATCGCCTTTGACGCGCACATGAAGTA
CCTCTCCGAGGCTGCCTGGGATGGTACCCCGGCCGCTGCGCAGGGGGCGG
ACAGCGCAACGCAGCTAGAGCTGCTGTCGGCCGCTGAGGGCGAGCTACGA
ATCGCCTTTGACGCGCACATGAAGTACCTCTCCGAGGTGGAGGAGGCGAA
GAGGGCGGAAATGGCGGCGTTCCAACGAGCGGGGGAGGCGGCCTTGCAAA
ACATGGAGCGGTCTCGCAAGGTGGAGGAGGCGAAGAGGGCGGAAATGGCG
GCGTTCCAACGAGCGGGGGAGGCGGCCTTGCAAAACATGGAGCGGTCTCG
CAAGGCTACAACGGACGACGGGCTGCGGCTGCACAAGGCCTTCCTCAACC
AGCGCCAGCGCATCACTCGTCTCCGAATGGAGGCTACAACGGACGACGGG
CTGCGGCTGCACAAGGCCTTCCTCAACCAGCGCCAGCGCATCACTCGTCT
CCGAATGGAG
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