mRNA_E-fasciculatus_F_contig1531.3740.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1531.3740.1 vs. uniprot
Match: D7G976_ECTSI (Fibronectin type III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G976_ECTSI) HSP 1 Score: 459 bits (1181), Expect = 3.400e-162 Identity = 238/266 (89.47%), Postives = 249/266 (93.61%), Query Frame = 1
Query: 1 MSLLGALLLALASCAVIGRASGESVENSACEISTFLSLRADWDADDEPCQKKLSFELWTFMKAEGSAQNPDAQRVRDVCVEHEEIGLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVASVLEAYPRNKQGGQTRRHLQSTTSEAGQAHQVAELIDGLENLGCTRTAGEDQKLCIMSDSFNYLGDAATLKDLGDLPEVEVVKEIPFGVVGFDEGSAMIELAYDIASGATFKFSTAKGGEQVL 798
M LLGAL LAL S AVIGRASGESVE+SACE STFLSLRA+WDADDEPCQKKLSFELWTFM+AEGSAQ+PDAQRVR CVEHEEIG+VELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATA+TFEAFCEDENIERVTRVASVLEAYPRNK+ G+TRRHLQSTTSEAGQAHQVAELIDGL+NLGCTRT GEDQKLC++SDSFNY GDAATLKD GDLPEVEVVKEIP G G DEGSAMIELAYDIASGATFKFSTA GGEQ L
Sbjct: 1 MPLLGALFLALTSGAVIGRASGESVESSACEFSTFLSLRAEWDADDEPCQKKLSFELWTFMQAEGSAQSPDAQRVRASCVEHEEIGVVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAMTFEAFCEDENIERVTRVASVLEAYPRNKRSGRTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFNYFGDAATLKDSGDLPEVEVVKEIPEGYEGVDEGSAMIELAYDIASGATFKFSTAYGGEQSL 266
BLAST of mRNA_E-fasciculatus_F_contig1531.3740.1 vs. uniprot
Match: A0A6H5KTN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN7_9PHAE) HSP 1 Score: 344 bits (882), Expect = 1.150e-117 Identity = 171/189 (90.48%), Postives = 180/189 (95.24%), Query Frame = 1
Query: 112 LRADWDADDEPCQKKLSFELWTFMKAEGSAQNPDAQRVRDVCVEHEEIGLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVASVLEAYPRNKQGGQTRRHLQSTTSEAGQAHQVAELIDGLENLGCTRTAGEDQKLCIMSDSFNYLGDAATLKDLGDLPEVEVVK 678
+RADWDADDEPCQKKLSFELWTFMKAEGSA NPDAQRVR CVEHEEIGLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVA V+EAYP NK GGQTRRHLQS+TS+AGQAHQVAELIDGL+NLGCTRT GED+KLC++SDSFNYLG AATLKD GDLPEVEV+K
Sbjct: 15 IRADWDADDEPCQKKLSFELWTFMKAEGSAHNPDAQRVRASCVEHEEIGLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVAPVVEAYPFNKHGGQTRRHLQSSTSQAGQAHQVAELIDGLKNLGCTRTTGEDKKLCVLSDSFNYLGKAATLKDSGDLPEVEVIK 203
BLAST of mRNA_E-fasciculatus_F_contig1531.3740.1 vs. uniprot
Match: UPI00196B5695 (Ig-like domain-containing protein n=1 Tax=Aquisphaera sp. JC669 TaxID=2712864 RepID=UPI00196B5695) HSP 1 Score: 64.3 bits (155), Expect = 6.230e-8 Identity = 34/61 (55.74%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 595 IMSDSFNYLGDAATLKDLGDLPE-VEVVKEIPFGVVGFDEGSAMIELAYDIASGATFKFST 774
+MSDSFNYLG AT GDLP V +VKEIP G G DEG M + Y IA GAT F++
Sbjct: 193 VMSDSFNYLGGYATDISTGDLPSGVNIVKEIPSGFTGTDEGRGMAQNVYKIAPGATLSFAS 253
BLAST of mRNA_E-fasciculatus_F_contig1531.3740.1 vs. uniprot
Match: UPI0016866F1F (S8 family serine peptidase n=1 Tax=Leptolyngbya sp. FACHB-261 TaxID=2692806 RepID=UPI0016866F1F) HSP 1 Score: 63.9 bits (154), Expect = 6.450e-8 Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 574 GEDQKLCIMSDSFNYLGDAATLKDLGDLP-EVEVVKEIP----FGVVGFDEGSAMIELAYDIASGATFKFSTA 777
G K+ I+SDSF++LG AAT GDLP +VEV+KE+P FG G DEG AM +L YD+A GA F TA
Sbjct: 174 GSGVKVGILSDSFDFLGGAATDVATGDLPPDVEVLKELPLDDPFG--GIDEGRAMAQLIYDLAPGADLAFHTA 244
BLAST of mRNA_E-fasciculatus_F_contig1531.3740.1 vs. uniprot
Match: UPI001F081A5D (T9SS type A sorting domain-containing protein n=1 Tax=Salinibacter ruber TaxID=146919 RepID=UPI001F081A5D) HSP 1 Score: 63.5 bits (153), Expect = 9.670e-8 Identity = 49/118 (41.53%), Postives = 59/118 (50.00%), Query Frame = 1
Query: 475 RRHLQSTTSEAGQAHQVAELIDGLENLGCTRTAGEDQKLCIMSDSFNYLGDAATLK----DLGDLP----------EVEVVKEIPFGVVGFDEGSAMIELAYDIASGATFKFSTAKGG 786
R H+ S SEA AH E+ T AG+ QK+C MSDS+N G AAT GDLP V+VV+E G G DEG AM++L +DIA A F TA GG
Sbjct: 178 RTHIGSVGSEADTAHSAYEVRRN------TGLAGDGQKICAMSDSYNQSGTAATTATDDVQSGDLPGPGNPEGNTSPVDVVQE--GGADGSDEGRAMLQLIHDIAPRAELGFHTAFGG 287
BLAST of mRNA_E-fasciculatus_F_contig1531.3740.1 vs. uniprot
Match: UPI0018DC2397 (PKD domain-containing protein n=2 Tax=Hymenobacter negativus TaxID=2795026 RepID=UPI0018DC2397) HSP 1 Score: 58.9 bits (141), Expect = 3.510e-6 Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 1
Query: 565 RTAGEDQKLCIMSDSFNYLGDAATLKDLGDLPEVEVVKEIPFGVVGFDEGSAMIELAYDIASGATFKFSTAKGGE 789
+ G + ++SDSFNYLG AAT GDLP V + G DEG M +L YD+A GA FSTA GGE
Sbjct: 195 QVTGAGVTIGVLSDSFNYLGGAATDVASGDLPAAGVRVLVESG--NTDEGRGMSQLIYDLAPGAAQVFSTANGGE 267
BLAST of mRNA_E-fasciculatus_F_contig1531.3740.1 vs. uniprot
Match: A0A845YP49_9CYAN (S8 family serine peptidase n=1 Tax=Symploca sp. SIO2G7 TaxID=2607798 RepID=A0A845YP49_9CYAN) HSP 1 Score: 55.5 bits (132), Expect = 4.290e-5 Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 595 IMSDSFNYLGDAATLKDLGDLPEVEVVKEIPFGVVGFDEGSAMIELAYDIASGATFKFSTAKGGE 789
++SDSF+ LG A + GDLP+V V+ ++P G G DEG AM++L DIA GA F TA G+
Sbjct: 129 VLSDSFDNLGGATADRLSGDLPDVNVLLDLPGG--GSDEGRAMLQLIADIAPGADLAFHTAFLGQ 191 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1531.3740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1531.3740.1 >prot_E-fasciculatus_F_contig1531.3740.1 ID=prot_E-fasciculatus_F_contig1531.3740.1|Name=mRNA_E-fasciculatus_F_contig1531.3740.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=266bp MSLLGALLLALASCAVIGRASGESVENSACEISTFLSLRADWDADDEPCQback to top mRNA from alignment at E-fasciculatus_F_contig1531:81..3717- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1531.3740.1 ID=mRNA_E-fasciculatus_F_contig1531.3740.1|Name=mRNA_E-fasciculatus_F_contig1531.3740.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3637bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1531:81..3717- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1531:81..3717- >mRNA_E-fasciculatus_F_contig1531.3740.1 ID=mRNA_E-fasciculatus_F_contig1531.3740.1|Name=mRNA_E-fasciculatus_F_contig1531.3740.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1596bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1531:81..3717- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |