mRNA_E-fasciculatus_F_contig1530.3738.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1530.3738.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 219 bits (558), Expect = 7.650e-62 Identity = 104/160 (65.00%), Postives = 123/160 (76.88%), Query Frame = 2
Query: 68 GLTPQPCLNVVIIALNKTCDGKRWYTSTKELQLASLEFCIACRSYLTLHLTIDQNTPHGLLAAADAQPPDPKRVGRTRVPRLRARRVTWNMPSAWGLSTPIFAMTDVDCLEFGPDFYGSVEAVTWPQRLKRIDFCDSSRFNEPIDRVEWPAPLQELSFGG 547
GLT PCL+ +I+ALN+TCDG WYTSTKELQ ASLEFCIACR+Y +HL +D P LLAAADA PP PKR+ TRVPRLRAR VTWNM +A L PIFA+TDVDCLEFG F GS+EAVTWP+RLK I+F +S FN+P++ ++WP LQ L GG
Sbjct: 8 GLTHNPCLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEFLYTSPFNQPLELIKWPESLQHLVLGG 167
BLAST of mRNA_E-fasciculatus_F_contig1530.3738.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 223 bits (567), Expect = 2.570e-60 Identity = 210/382 (54.97%), Postives = 251/382 (65.71%), Query Frame = 2
Query: 68 GLTPQPCLNVVIIALNKTCDGKRWYTSTKELQLASLEFCIACRSYLTLHLTIDQNTPHGLLAAADAQPPDPKRVGRTRVPRLRARRVTWNMPSAWGLSTPIFAMTDVDCLEFGPDFYGSVEAVTWPQRLKRIDFCDSSRFNEPIDRVEWPAPLQELSFGGHXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADLFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSELG----SAESGILLSSCXXXXXXXXXXXXXXXXXXXXXXXNQSLQGLGTWMPNLEVFRLLIDGDMEVGSKSLLRGIEWPTGLRQLAVFEHSNMKKVAIPLTIEVLYIYN 1201
G T + CL +I+ALN+TCDGK WYTSTKELQLASL+FCIACR+ T+HL +D+ P LLA+ADA PP PKR+ TRVPRLR+RRVTWNMP+A L TPIFAMTD++ LEFG F S+EAV WP+ L+ ++F S F++ I+ V+WP LQ ++FGG + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX F XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G A +G+++ + QSLQGLGTWMPNLEV LL +G + LR IEWP GLR L + E +++ V IPL ++VL+ YN
Sbjct: 45 GPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTFGGDFNQPIERVKFPASL---QQLIFRTSSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFGNRLNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWCDEFAGNGMVIFANFDQPIGSSVGPALLRRLVLGHMFRQSLQGLGTWMPNLEVLHLLHYHGSGLGDSNFLREIEWPKGLRHLTLLEGTSIDGVDIPLAVQVLFAYN 423
BLAST of mRNA_E-fasciculatus_F_contig1530.3738.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 202 bits (514), Expect = 5.220e-54 Identity = 189/385 (49.09%), Postives = 219/385 (56.88%), Query Frame = 2
Query: 56 FAMAGLTPQPCLNVVIIALNKTCDGKRWYTSTKELQLASLEFCIACRSYLTLHLTIDQNTPHGLLAAADAQPPDPKRVGRTRVPRLRARRVTWNMPSAWGLSTPIFAMTDVDCLEFGPDFYGSVEAVTWPQRLKRID---------FCDSSRFNEPIDRVEWPAPLQELSFGGHXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADLFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSELGSAESGILLSSCXXXXXXXXXXXXXXXXXXXXXXXNQSLQGLGTWMPNLEVFRLLIDGDMEVGSKSLLRGIEWPTGLRQLAVFEHSNMKKVAIPLTIE 1183
F+ +G CLN +I+ALN+T DGK WYTSTKE QLASLEFCIACR++ TL L +D TP LLAAADA PP PKR+ TRVPRLRARRVTW++P+A GL I++M D D LEF F S+EAV WP+RLK ++ F D S F++PI V WP L++L+FG XXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LG ++++S X QSLQ LGTWMPNLE F LL S LRGIEWP GLRQLAV S++ V IP T+E
Sbjct: 2 FSSSGPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLKTVEVSGIAEVAKFHDKSLFDQPIAGVVWPDTLEQLTFG-------------------------------------------LFLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVCFGVRQEVLGD----VVVTSKFNRXIGASAWPKAMHRLTLGQNFRQSLQELGTWMPNLETFHLLHHIHDSGTEDSFLRGIEWPKGLRQLAVCRLSSLAGVVIPSTVE 339
BLAST of mRNA_E-fasciculatus_F_contig1530.3738.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 206 bits (523), Expect = 6.600e-53 Identity = 98/159 (61.64%), Postives = 118/159 (74.21%), Query Frame = 2
Query: 68 GLTPQPCLNVVIIALNKTCDGKRWYTSTKELQLASLEFCIACRSYLTLHLTIDQNTPHGLLAAADAQPPDPKRVGRTRVPRLRARRVTWNMPSAWGLSTPIFAMTDVDCLEFGPDFYGSVEAVTWPQRLKRIDFCDSSRFNEPIDRVEWPAPLQELSFG 544
G T CL + +ALN+TCDGK WYTSTKELQLASLE C+ACR Y TLHLT+D +TP LLAAADA P PKR+ TRVPRLRARR TWN+P+A G+ T IFA DVD LEFG F+GS++A+ WP+RLK I+F SS N +D V WPA L+++ G
Sbjct: 130 GPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPLNRLLDGVSWPASLRKVCLG 288
BLAST of mRNA_E-fasciculatus_F_contig1530.3738.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 198 bits (503), Expect = 5.930e-52 Identity = 151/405 (37.28%), Postives = 174/405 (42.96%), Query Frame = 2
Query: 62 MAGLTPQPCLNVVIIALNKTCDGKRWYTSTKELQLASLEFCIACRSYLTLHLTIDQNTPHGLLAAADAQPPDPKRVGRTRVPRLRARRVTWNMPSAWGLSTPIFAMTDVDCLEFGPDFYGSVEAVT-WPQR--LKRIDFCDSSRFNEPIDRVEWPAPLQELSFGGHXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADLFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSELGSAESGILLSSCXXXXXXXXXXXXXXXXXXXXXXXNQSLQGLGTWMPNLEVFRLLIDGDMEVGSKSLLRGIEWPTGLRQLAVFEHSNMKKVAIPLTIEVLYIYNGF*RLQVQTCSFDRARKSTVCA 1267
M G + CLN ++IALN+TC+G+ WYTSTKELQLASLEFC+ACR+Y TLHL +D P LLA ADA PP P+ + RTRVPRLRARRVTW M A LS PIFAMTDVDCL+FG S+EA+ W R KR F S + R W S G H A +F + LG QSLQGLGTWMPNLEV RL D + G+ SLL GI WPTGLRQLAV+E + M V IP T+EVLY VQTCSFD AR S C+
Sbjct: 105 MPGPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFGET---SLEALRLWHGRDGWKRSSF---SFLHYSTSRSVW-------SSGQHLCRRLNSVAVVIARAYD----------------------WICDRCRRKRDNDVLVLRPTHRQPWLAYVF---------------------------------------ASTPLGD-------------------------------DFKQSLQGLGTWMPNLEVLRLFDFRDPDFGNDSLLLGIGWPTGLRQLAVYECTKMDGVTIPSTVEVLYKV-------VQTCSFDGARSSGYCS 397
BLAST of mRNA_E-fasciculatus_F_contig1530.3738.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 202 bits (513), Expect = 7.290e-51 Identity = 98/160 (61.25%), Postives = 117/160 (73.12%), Query Frame = 2
Query: 56 FAMAGLTPQPCLNVVIIALNKTCDGKRWYTSTKELQLASLEFCIACRSYLTLHLTIDQNTPHGLLAAADAQPPDPKRVGRTRVPRLRARRVTWNMPSAWGLSTPIFAMTDVDCLEFGPDFYGSVEAVTWPQRLKRIDFCDSSRFNEPIDRVEWPAPLQEL 535
+ G T CLN + +AL +T DGK WYTSTKELQLASLEFC+ACR+Y TLHL +D P LLAAAD P PKR+ R RVPRLRAR VTWNMP+A L +PIFA+ D+D L+FG F GS+EAVTWP+RL+ I F + S FN PID V+WPA L+ L
Sbjct: 26 YCSPGPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAFHNFSPFNTPIDLVKWPASLKRL 185
BLAST of mRNA_E-fasciculatus_F_contig1530.3738.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE) HSP 1 Score: 189 bits (481), Expect = 6.640e-49 Identity = 252/405 (62.22%), Postives = 271/405 (66.91%), Query Frame = 2
Query: 122 CDGKRWYTSTKELQLASLEFCIACRSYLTLHLTIDQNTPHGLLAAADAQPPDPKRVGRTRVPRLRARRVTWNMPSAWGLSTPIFAMTDVDCLEFGPDFYGSVEAVTWPQRLKRIDFCDSSRFNEPIDRVEWPAPLQELSFGG----------------------HXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADLFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-----------------------ELGSAESGILLSSCXXXXXXXXXXXXXXXXXXXXXXXNQSLQGLGTWMPNLEVFRLLIDGDMEVGSKSLLRGIEWPTGLRQLAVFEHSNMKKVAIPLTIEVLYIYN 1201
CDGKRWYTSTKELQ ASLEFCIACR Y TL L +D TP LLAA DA P KR RTRVPRLRARRV WNMP+A L +PIFA+ DV L+FGP F GS+E+V WPQRLK IDF S FN+PI+ VE+P L EL XXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX + F XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E + I+ S XXXXXXXXXXXXXXX QSLQGLGTW+PNLE+F L + SLLRGIEWPTGLRQLAVF S + V IP T+EV + N
Sbjct: 2 CDGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEIDFSWGSLFNQPIEGVEFPPSLLELRLSDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYRSRXXXXXXXXXXXXXXXXXXXGEAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHESQGFDHAIMFSE-FXXXXXXXXXXXXXXXLTLGHKFRQSLQGLGTWIPNLEIFHFLDHSNGSGDEDSLLRGIEWPTGLRQLAVFRDSRLDGVIIPSTVEVSRLCN 405
BLAST of mRNA_E-fasciculatus_F_contig1530.3738.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE) HSP 1 Score: 177 bits (448), Expect = 1.810e-43 Identity = 91/146 (62.33%), Postives = 104/146 (71.23%), Query Frame = 2
Query: 98 VIIALNKTCDGKRWYTSTKELQLASLEFCIACRSYLTLHLTIDQNTPHGLLAAADAQPPDPKRVGRTRVPRLRARRVTWNMPSAWGLSTPIFAMTDVDCLEFGPDFYGSVEAVTWPQRLKRIDFCDSSRFNEPIDRVEWPAPLQEL 535
+I+ALN+ CDGKRWYTSTKELQLASLEFC+ACR Y L L +D TP LLAA DA PP KR RTRVPRLRARRV WNMP+A L T +FA+ DV+CL FG F GS+EAV WP LK+I F SS FN+ A LQ+L
Sbjct: 21 LILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQIIFF-SSEFNQXXXXXXXXASLQKL 165
BLAST of mRNA_E-fasciculatus_F_contig1530.3738.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI) HSP 1 Score: 164 bits (416), Expect = 2.480e-41 Identity = 86/156 (55.13%), Postives = 107/156 (68.59%), Query Frame = 2
Query: 86 CLNVVIIALNKTCDGKRWYTSTKELQLASLEFCIACRSYLTLHLTIDQNTPHGLLAAADAQPPDPKR-VGRTRVPRLRARRVTWNMPSAWGLSTP--IFAMTDVDCLEFGPDFYGSVEAVTWPQRLKRIDFCDSSRFNEPIDRVEWPAPLQELSFG 544
CLN +++AL++TCDGK WYTSTKELQLASL FC ACR++ T+HL +D++ P LLAAADA PP + V TR P A + S+ G+ P +FAMTDVD LEFG DF G++EAV WP+ LK ID S F +PID +EWP LQ L FG
Sbjct: 136 CLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPPASEAAVSDTRAPTHSASCDVEHADSS-GIEEPCTVFAMTDVDHLEFGWDFEGNLEAVAWPRWLKTIDLHPWSNFGKPIDLIEWPDSLQTLEFG 290
BLAST of mRNA_E-fasciculatus_F_contig1530.3738.1 vs. uniprot
Match: A0A6H5K0U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE) HSP 1 Score: 106 bits (265), Expect = 7.030e-20 Identity = 61/125 (48.80%), Postives = 78/125 (62.40%), Query Frame = 2
Query: 89 LNVVIIALNKTC-DG--KRWYTSTKELQLASLEFCIACRSYLTLHLTIDQNTPHGLLAAADAQPPDPKRVGRTRVPRLRARRVTWNMPSAWGLSTPIFAMTDVDCLEFGPDFYGSVEAVTWPQRL 454
L+VVI+ LN+ C DG K W+ STKELQLASL+ C ACR LHL ++ +TP LLA AD+ P D G TRVPRLRAR V+W++ SA LS+ I+A+ F ++AV WP L
Sbjct: 30 LDVVIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLLAPADS-PSDGSEEG-TRVPRLRAREVSWDLTSADRLSSSIYALASAQVFTFSDSLNAVLDAVVWPTSL 152 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1530.3738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1530.3738.1 >prot_E-fasciculatus_F_contig1530.3738.1 ID=prot_E-fasciculatus_F_contig1530.3738.1|Name=mRNA_E-fasciculatus_F_contig1530.3738.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=393bp MEGNAGSGFAMAGLTPQPCLNVVIIALNKTCDGKRWYTSTKELQLASLEFback to top mRNA from alignment at E-fasciculatus_F_contig1530:3444..10629- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1530.3738.1 ID=mRNA_E-fasciculatus_F_contig1530.3738.1|Name=mRNA_E-fasciculatus_F_contig1530.3738.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=7186bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1530:3444..10629- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1530:3444..10629- >mRNA_E-fasciculatus_F_contig1530.3738.1 ID=mRNA_E-fasciculatus_F_contig1530.3738.1|Name=mRNA_E-fasciculatus_F_contig1530.3738.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2358bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1530:3444..10629- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |