mRNA_E-fasciculatus_F_contig153.3735.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig153.3735.1
Unique NamemRNA_E-fasciculatus_F_contig153.3735.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig153.3735.1 vs. uniprot
Match: A0A7S1TXY0_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXY0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.350e-12
Identity = 35/89 (39.33%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:    1 YLSDGFCDTGLNIEECGYDEGDCCAASCVSGLVFTCSSEDEHCVDPEYATASLWEDCDFGDEGFLTDWHLNDTWCHAELNNELCGFDGG 267
            Y +DG+CD  +N + CG+D GDCC  +CVSG  FTC     +CV+P         DCDF          L +  C+ E N + C +DGG
Sbjct:  495 YTADGYCDPEMNTDACGWDGGDCCEQTCVSGSPFTCGVNGYNCVNPT-------GDCDFATA-------LGNGVCNLEANIDECSWDGG 569
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BLAST of mRNA_E-fasciculatus_F_contig153.3735.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 6.990e-10
Identity = 33/95 (34.74%), Postives = 46/95 (48.42%), Query Frame = 1 
Query:    4 LSDGFCDTGLNIEECGYDEGDCCAASCVSGLV-------FTCSSEDEHCVDPEYATASLWEDCDFGDEGFLTDWHLNDTWCHAELNNELCGFDGG 267
            + +G C+ G NIEECG+D GDCC  +C  G         + C   D  CVD +  T  + E+C            + +  C + LNNE C +DGG
Sbjct:   98 IGNGRCNMGNNIEECGFDGGDCCECTCEDGEYTCGQYYGYACIDPDATCVDDDAVTVDMMENC-------YDPSRIGNGACDSLLNNEDCAYDGG 185
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BLAST of mRNA_E-fasciculatus_F_contig153.3735.1 vs. uniprot
Match: D7FSN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN8_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.790e-6
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    1 YLSDGFCDTGLNIEECGYDEGDCCAASCVSGLVFTCSSEDEHCVDP 138
            Y+SDG+CD+  N EEC +D GDCC   CV  L +TC   D  C++P
Sbjct:   65 YISDGWCDSYYNTEECDWDGGDCCECDCVDAL-YTCGVADYDCLNP 109
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BLAST of mRNA_E-fasciculatus_F_contig153.3735.1 vs. uniprot
Match: A0A2E8S136_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E8S136_9DELT)

HSP 1 Score: 53.9 bits (128), Expect = 2.580e-6
Identity = 35/104 (33.65%), Postives = 43/104 (41.35%), Query Frame = 1 
Query:    4 LSDGFCDTGLNIEECGYDEGDCCAAS----------CVSGLVFTCSSEDEHCVDPEYATASLWEDCDFGDEGFLTD------WHLNDTWCHAELNNELCGFDGG 267
            + DG C+TG NIE+CGYD GDCC AS                          V+ + AT+  W  CD  D              + D  C    NNE CG+DGG
Sbjct:  537 IGDGTCNTGNNIEQCGYDGGDCCNASWDGXXXXXXXXXXXXXXXXXXXXXESVNADCATSGTWP-CDCQDPAACDSNEAADFTKIGDEICDLSNNNEACGWDGG 639
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig153.3735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S1TXY0_9STRA5.350e-1239.33Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
D8LEP6_ECTSI6.990e-1034.74Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7FSN8_ECTSI1.790e-650.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2E8S136_9DELT2.580e-633.65Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig153contigE-fasciculatus_F_contig153:16146..17035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue7.6e-08
Seed eggNOG ortholog2880.D7G5Y7
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928009.437631-CDS-E-fasciculatus_F_contig153:16145..162061622928009.437631-CDS-E-fasciculatus_F_contig153:16145..16206Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig153 16146..16206 +
1695995787.1782107-CDS-E-fasciculatus_F_contig153:16145..162061695995787.1782107-CDS-E-fasciculatus_F_contig153:16145..16206Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig153 16146..16206 +
1622928009.45259-CDS-E-fasciculatus_F_contig153:16817..170351622928009.45259-CDS-E-fasciculatus_F_contig153:16817..17035Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig153 16818..17035 +
1695995787.1901371-CDS-E-fasciculatus_F_contig153:16817..170351695995787.1901371-CDS-E-fasciculatus_F_contig153:16817..17035Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig153 16818..17035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig153.3735.1prot_E-fasciculatus_F_contig153.3735.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig153 16146..17035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig153.3735.1

>prot_E-fasciculatus_F_contig153.3735.1 ID=prot_E-fasciculatus_F_contig153.3735.1|Name=mRNA_E-fasciculatus_F_contig153.3735.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=93bp
YLSDGFCDTGLNIEECGYDEGDCCAASCVSGLVFTCSSEDEHCVDPEYAT
ASLWEDCDFGDEGFLTDWHLNDTWCHAELNNELCGFDGGTLE*
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mRNA from alignment at E-fasciculatus_F_contig153:16146..17035+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig153.3735.1 ID=mRNA_E-fasciculatus_F_contig153.3735.1|Name=mRNA_E-fasciculatus_F_contig153.3735.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=890bp|location=Sequence derived from alignment at E-fasciculatus_F_contig153:16146..17035+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACTTGAGCGACGGATTTTGTGACACGGGACTGAACATCGAAGAGTGTGG
CTACGACGAAGGTACCACAGTTAACGGATTATTTCTCCTACTTCGTAGTT
AGCTACATCCCGAGGAAGTAGATAGTTTAGCGTGATGACCGCGAGCTCAC
ATCTATGTTTTGTAGTCCCGCTGTTCATGGTTGTTTCCATTTTTTCGACA
AGCAAGCACCTCTAGGTTTGCTTAGTGACGAACTGCACTGTGGGTAATAA
CAAGTGTATTTCATACCAGGTTCTGCTAATCTTCGTGAAAGGCACAGCTA
AAGCTCCCCTCCCATGGATCATGGGTGCCAGCTTCAACGTGCACGCACGT
AAACTCAGGCTCAACCTCAACCCACCTCGAGTTTCTCCTAGAGTTGTCCG
CACACGCCTCTCGTAGCTAGGTAGCATTACCGTGTGAACAGAAAAAGTGA
CGGACCAAGCCGTAGGATACAATGGAGATAAATTATTCTACGCTTCGCCC
TCTGCAGGCACTACACACGTATTGTATTCAGTCGCAATTACGTGGTACGT
CCAACTGGATCAACGCGAGAGAACATGACAGAAAGCGACCATGCAAGAAC
CTCTTTCCTGCGGCAGTTGCCTAGAGCTTGATCACTGACAGTGATTACTT
TACACACTCTCTTGTCCTGTAGGTGACTGCTGCGCCGCGAGTTGCGTTTC
CGGCCTAGTATTCACGTGCTCCAGCGAAGACGAGCACTGTGTGGACCCTG
AATATGCCACGGCTTCGCTATGGGAAGACTGCGATTTCGGAGATGAAGGA
TTTTTGACGGACTGGCACCTGAACGACACATGGTGCCACGCAGAACTAAA
CAACGAACTATGCGGCTTCGATGGAGGTACACTTGAATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig153:16146..17035+

>mRNA_E-fasciculatus_F_contig153.3735.1 ID=mRNA_E-fasciculatus_F_contig153.3735.1|Name=mRNA_E-fasciculatus_F_contig153.3735.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=558bp|location=Sequence derived from alignment at E-fasciculatus_F_contig153:16146..17035+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACTTGAGCGACGGATTTTGTGACACGGGACTGAACATCGAAGAGTGTGG
CTACGACGAAGTACTTGAGCGACGGATTTTGTGACACGGGACTGAACATC
GAAGAGTGTGGCTACGACGAAGGTGACTGCTGCGCCGCGAGTTGCGTTTC
CGGCCTAGTATTCACGTGCTCCAGCGAAGACGAGCACTGTGTGGACCCTG
AATATGCCACGGCTTCGCTATGGGAAGACTGCGATTTCGGAGATGAAGGA
TTTTTGACGGACTGGCACCTGAACGACACATGGTGCCACGCAGAACTAAA
CAACGAACTATGCGGCTTCGATGGAGGTACACTTGAATAGGTGACTGCTG
CGCCGCGAGTTGCGTTTCCGGCCTAGTATTCACGTGCTCCAGCGAAGACG
AGCACTGTGTGGACCCTGAATATGCCACGGCTTCGCTATGGGAAGACTGC
GATTTCGGAGATGAAGGATTTTTGACGGACTGGCACCTGAACGACACATG
GTGCCACGCAGAACTAAACAACGAACTATGCGGCTTCGATGGAGGTACAC
TTGAATAG
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