mRNA_E-fasciculatus_F_contig15293.3733.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15293.3733.1
Unique NamemRNA_E-fasciculatus_F_contig15293.3733.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15293.3733.1 vs. uniprot
Match: A0A7S2Y0K4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0K4_9STRA)

HSP 1 Score: 218 bits (554), Expect = 3.290e-70
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 1 
Query:    1 FQGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKAKK 333
            ++GDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSG CYPDRLINSIPN+YYYAANNPSEATIAKRRSYA+TISYLTPPAENAGLYK  K
Sbjct:   70 YEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGTCYPDRLINSIPNLYYYAANNPSEATIAKRRSYASTISYLTPPAENAGLYKGLK 180
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BLAST of mRNA_E-fasciculatus_F_contig15293.3733.1 vs. uniprot
Match: A0A7S2TVV7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TVV7_9EUKA)

HSP 1 Score: 205 bits (522), Expect = 2.060e-65
Identity = 96/111 (86.49%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:    1 FQGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKAKK 333
            ++GDPMRLLF+KSASPHHGFAAYY+YLEK+F A+AVLHFGTHGSLEFMPGKQVGMSG CYPDRLI+S+PN+YYYAANNPSEATIAKRR YA+TISYLTPPAENAGLYK  K
Sbjct:   47 YEGDPMRLLFAKSASPHHGFAAYYSYLEKVFGANAVLHFGTHGSLEFMPGKQVGMSGKCYPDRLIHSLPNLYYYAANNPSEATIAKRRGYASTISYLTPPAENAGLYKGLK 157
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BLAST of mRNA_E-fasciculatus_F_contig15293.3733.1 vs. uniprot
Match: A0A7S2K5K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K5K2_9STRA)

HSP 1 Score: 206 bits (524), Expect = 8.170e-65
Identity = 97/111 (87.39%), Postives = 105/111 (94.59%), Query Frame = 1 
Query:    1 FQGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKAKK 333
            ++GDPMRLLF+KSASPHHGFAAYYTYLEK+F ADAVLHFGTHGSLEFMPGKQVGMSG CYPDRLINS+P+ Y YAANNPSEATIAKRRSY+AT+SYLTPPAENAGLYK  K
Sbjct:  166 YEGDPMRLLFAKSASPHHGFAAYYTYLEKVFGADAVLHFGTHGSLEFMPGKQVGMSGTCYPDRLINSLPSAYLYAANNPSEATIAKRRSYSATVSYLTPPAENAGLYKGLK 276
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BLAST of mRNA_E-fasciculatus_F_contig15293.3733.1 vs. uniprot
Match: D7FW04_ECTSI (Magnesium chelatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW04_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 1.060e-64
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:    1 FQGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKAKK 333
            ++GDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYK  K
Sbjct:  669 YEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLK 779
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BLAST of mRNA_E-fasciculatus_F_contig15293.3733.1 vs. uniprot
Match: E2D957_PRUAV (Magnesium chelatase H subunit (Fragment) n=1 Tax=Prunus avium TaxID=42229 RepID=E2D957_PRUAV)

HSP 1 Score: 200 bits (508), Expect = 3.410e-64
Identity = 94/107 (87.85%), Postives = 103/107 (96.26%), Query Frame = 1 
Query:    1 FQGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLY 321
            ++GDPMRLLFSKSASPHHGFAAYY+++EKIF+ADAVLHFGTHGSLEFMPGKQVGMS AC+PD LI +IPN+YYYAANNPSEATIAKRRSYA TISYLTPPAENAGLY
Sbjct:   41 YEGDPMRLLFSKSASPHHGFAAYYSFVEKIFQADAVLHFGTHGSLEFMPGKQVGMSDACFPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLY 147
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BLAST of mRNA_E-fasciculatus_F_contig15293.3733.1 vs. uniprot
Match: A0A0G4GDA4_VITBC (Magnesium chelatase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDA4_VITBC)

HSP 1 Score: 218 bits (554), Expect = 1.720e-63
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 1 
Query:    1 FQGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKAKK 333
            ++GDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSG CYPDRLINSIPN+YYYAANNPSEATIAKRRSY+ATISYLTPPAENAGLYK  K
Sbjct:  599 YEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGTCYPDRLINSIPNLYYYAANNPSEATIAKRRSYSATISYLTPPAENAGLYKGLK 709
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BLAST of mRNA_E-fasciculatus_F_contig15293.3733.1 vs. uniprot
Match: A0A7S0MDR9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MDR9_9CRYP)

HSP 1 Score: 213 bits (541), Expect = 1.890e-63
Identity = 100/111 (90.09%), Postives = 108/111 (97.30%), Query Frame = 1 
Query:    1 FQGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKAKK 333
            ++GDPMRLLFSKSASPHHGFAAY+TY+EK+FKADA+LHFGTHGSLEFMPGKQVGMS ACYPDRLINS+PN+YYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYK  K
Sbjct:  378 YEGDPMRLLFSKSASPHHGFAAYHTYVEKVFKADALLHFGTHGSLEFMPGKQVGMSSACYPDRLINSLPNLYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLK 488
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BLAST of mRNA_E-fasciculatus_F_contig15293.3733.1 vs. uniprot
Match: A0A7S3LF30_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LF30_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.900e-63
Identity = 98/111 (88.29%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:    1 FQGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKAKK 333
            ++GDPMRLLF+KSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSG CYPDRLI+S+P+ Y YAANNPSEATIAKRRSY+AT+SYLTPPAENAGLYK  K
Sbjct:  237 YEGDPMRLLFAKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGTCYPDRLISSLPSAYLYAANNPSEATIAKRRSYSATVSYLTPPAENAGLYKGLK 347
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15293.3733.1 vs. uniprot
Match: A0A835YVC9_9STRA (Magnesium chelatase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC9_9STRA)

HSP 1 Score: 216 bits (549), Expect = 8.180e-63
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 1 
Query:    1 FQGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKAKK 333
            ++GDPMRLLFSKSASPHHGFAAYYTYLEK+F ADAVLHFGTHGSLEFMPGKQVGMSG CYPDRLINSIPN+YYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYK  K
Sbjct:  660 YEGDPMRLLFSKSASPHHGFAAYYTYLEKVFGADAVLHFGTHGSLEFMPGKQVGMSGTCYPDRLINSIPNLYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLK 770
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BLAST of mRNA_E-fasciculatus_F_contig15293.3733.1 vs. uniprot
Match: UPI00165007EB (cobaltochelatase subunit CobN n=1 Tax=Prochlorococcus sp. HOT212_60m_823D04 TaxID=1961095 RepID=UPI00165007EB)

HSP 1 Score: 198 bits (504), Expect = 9.300e-63
Identity = 93/111 (83.78%), Postives = 103/111 (92.79%), Query Frame = 1 
Query:    1 FQGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKAKK 333
            ++GDPMRLL+S+SASPHHGFAAYYTY+EKI+ ADAVLHFGTHGSLEFMPGKQ+GMS  CYPD LI S+PN+YYYAANNPSEATIAKRR YA+TISYLTPPAENAGLYK  K
Sbjct:   43 YEGDPMRLLYSRSASPHHGFAAYYTYVEKIWGADAVLHFGTHGSLEFMPGKQMGMSETCYPDSLIGSLPNLYYYAANNPSEATIAKRRGYASTISYLTPPAENAGLYKGLK 153
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15293.3733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2Y0K4_9STRA3.290e-7093.69Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2TVV7_9EUKA2.060e-6586.49Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S2K5K2_9STRA8.170e-6587.39Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
D7FW04_ECTSI1.060e-6496.40Magnesium chelatase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
E2D957_PRUAV3.410e-6487.85Magnesium chelatase H subunit (Fragment) n=1 Tax=P... [more]
A0A0G4GDA4_VITBC1.720e-6393.69Magnesium chelatase n=2 Tax=Vitrella brassicaformi... [more]
A0A7S0MDR9_9CRYP1.890e-6390.09Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S3LF30_9STRA1.900e-6388.29Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A835YVC9_9STRA8.180e-6392.79Magnesium chelatase n=2 Tax=Tribonema minus TaxID=... [more]
UPI00165007EB9.300e-6383.78cobaltochelatase subunit CobN n=1 Tax=Prochlorococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15293contigE-fasciculatus_F_contig15293:2473..2805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.2
Seed ortholog evalue3e-53
Seed eggNOG ortholog2880.D7FW04
Preferred nameCHLH
KEGG rclassRC01012
KEGG koko:K03403
KEGG ReactionR03877
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009532,GO:0009536,GO:0009570,GO:0009706,GO:0009941,GO:0010007,GO:0016020,GO:0016851,GO:0016874,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032991,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0051002,GO:0051003,GO:1902494
EggNOG free text desc.ligase activity, forming nitrogen-metal bonds
EggNOG OGs2QT3B@2759,COG1429@1
EC6.6.1.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size334
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928009.2837033-CDS-E-fasciculatus_F_contig15293:2472..27901622928009.2837033-CDS-E-fasciculatus_F_contig15293:2472..2790Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15293 2473..2790 -
1695995787.1175578-CDS-E-fasciculatus_F_contig15293:2472..27901695995787.1175578-CDS-E-fasciculatus_F_contig15293:2472..2790Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15293 2473..2790 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928009.3041098-UTR-E-fasciculatus_F_contig15293:2790..28051622928009.3041098-UTR-E-fasciculatus_F_contig15293:2790..2805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15293 2791..2805 -
1695995787.1296692-UTR-E-fasciculatus_F_contig15293:2790..28051695995787.1296692-UTR-E-fasciculatus_F_contig15293:2790..2805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15293 2791..2805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15293.3733.1prot_E-fasciculatus_F_contig15293.3733.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15293 2473..2790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15293.3733.1

>prot_E-fasciculatus_F_contig15293.3733.1 ID=prot_E-fasciculatus_F_contig15293.3733.1|Name=mRNA_E-fasciculatus_F_contig15293.3733.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=106bp
MRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGM
SGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAG
LYKAKK
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mRNA from alignment at E-fasciculatus_F_contig15293:2473..2805-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15293.3733.1 ID=mRNA_E-fasciculatus_F_contig15293.3733.1|Name=mRNA_E-fasciculatus_F_contig15293.3733.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=333bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15293:2473..2805- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCAGGGTGACCCGATGCGTCTGCTCTTCTCCAAGTCCGCCTCCCCCCA
CCACGGGTTCGCGGCGTACTACACGTACCTCGAGAAGATCTTCAAGGCGG
ATGCGGTCCTCCACTTCGGCACCCACGGGTCCCTCGAGTTCATGCCCGGC
AAGCAGGTCGGCATGTCCGGCGCGTGCTACCCGGACCGCCTGATCAACTC
CATCCCCAACATCTACTACTACGCGGCGAACAACCCTTCGGAGGCTACGA
TCGCCAAGCGCCGGTCGTACGCGGCGACCATCTCGTACCTCACCCCTCCC
GCCGAGAACGCCGGTCTCTACAAGGCAAAGAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15293:2473..2805-

>mRNA_E-fasciculatus_F_contig15293.3733.1 ID=mRNA_E-fasciculatus_F_contig15293.3733.1|Name=mRNA_E-fasciculatus_F_contig15293.3733.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15293:2473..2805- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGTCTGCTCTTCTCCAAGTCCGCCTCCCCCCACCACGGGTTCGCGGC
GTACTACACGTACCTCGAGAAGATCTTCAAGGCGGATGCGGTCCTCCACT
TCGGCACCCACGGGTCCCTCGAGTTCATGCCCGGCAAGCAGGTCGGCATG
TCCGGCGCGTGCTACCCGGACCGCCTGATCAACTCCATCCCCAACATCTA
CTACTACGCGGCGAACAACCCTTCGGAGGCTACGATCGCCAAGCGCCGGT
CGTACGCGGCGACCATCTCGTACCTCACCCCTCCCGCCGAGAACGCCGGT
CTCTACAAGGCAAAGAAGATGCGTCTGCTCTTCTCCAAGTCCGCCTCCCC
CCACCACGGGTTCGCGGCGTACTACACGTACCTCGAGAAGATCTTCAAGG
CGGATGCGGTCCTCCACTTCGGCACCCACGGGTCCCTCGAGTTCATGCCC
GGCAAGCAGGTCGGCATGTCCGGCGCGTGCTACCCGGACCGCCTGATCAA
CTCCATCCCCAACATCTACTACTACGCGGCGAACAACCCTTCGGAGGCTA
CGATCGCCAAGCGCCGGTCGTACGCGGCGACCATCTCGTACCTCACCCCT
CCCGCCGAGAACGCCGGTCTCTACAAGGCAAAGAAG
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