mRNA_E-fasciculatus_F_contig15292.3731.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15292.3731.1
Unique NamemRNA_E-fasciculatus_F_contig15292.3731.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15292.3731.1 vs. uniprot
Match: D7G211_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G211_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 1.170e-63
Identity = 103/116 (88.79%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    4 RGVANEPSSHAREGLDEDEAAAREAALDKAERIQSRSAECGICLEKVRKLGKVKDRVFGILVSCKHVYCLGCIREWRDKSENHECPECGVPSSLVIPSKTLVTDPDRKKRLALELR 351
            RGVA+EPSSH  EG  EDE AAREAALD+AE+IQSRSAECGICLEKVRKLGKVKDRVFGILVSC+HVYCLGCIREWRDKS+NH CPECG+ SSLVIPSKTLVTDPDRKKRLALELR
Sbjct:  358 RGVASEPSSHESEGFGEDEVAAREAALDEAEKIQSRSAECGICLEKVRKLGKVKDRVFGILVSCRHVYCLGCIREWRDKSDNHACPECGLTSSLVIPSKTLVTDPDRKKRLALELR 473
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BLAST of mRNA_E-fasciculatus_F_contig15292.3731.1 vs. uniprot
Match: A0A6H5L7F8_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F8_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 3.040e-60
Identity = 99/116 (85.34%), Postives = 105/116 (90.52%), Query Frame = 1 
Query:    4 RGVANEPSSHAREGLDEDEAAAREAALDKAERIQSRSAECGICLEKVRKLGKVKDRVFGILVSCKHVYCLGCIREWRDKSENHECPECGVPSSLVIPSKTLVTDPDRKKRLALELR 351
            RGVA+EPSSHA EG  EDE AAREAALD+AERIQSRSAECGICL KVRKLGKVKDRVFGILVSCKH+YCLGCI+EWRDKS NH CPECG+ SSL +PSKT VTD DRKKRLALELR
Sbjct:  357 RGVASEPSSHASEGFGEDEVAAREAALDEAERIQSRSAECGICLGKVRKLGKVKDRVFGILVSCKHIYCLGCIQEWRDKSNNHACPECGLSSSLALPSKTFVTDLDRKKRLALELR 472
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BLAST of mRNA_E-fasciculatus_F_contig15292.3731.1 vs. uniprot
Match: A0A0P7WW93_SCLFO (E3 ubiquitin-protein ligase makorin-2 n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7WW93_SCLFO)

HSP 1 Score: 78.6 bits (192), Expect = 1.180e-14
Identity = 46/99 (46.46%), Postives = 57/99 (57.58%), Query Frame = 1 
Query:   73 EAALDKAERIQ-SRSAECGICLEKVRKLGKVKDRVFGILVSCKHVYCLGCIREWR--DKSENH---ECPECGVPSSLVIPSKTLVTDPDRKKRLALELR 351
            EA ++KA   Q S+   C IC+E V +     +R FGIL SC H YCLGCIR+WR   + EN     CPEC V S  VIPS   V D ++K RL  E +
Sbjct:  217 EADMEKAFAAQFSQDKVCSICMEVVYEKATPSERRFGILSSCSHTYCLGCIRQWRCAKQFENKIVKSCPECRVVSEFVIPSVFWVEDQEQKNRLIEEFK 315
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BLAST of mRNA_E-fasciculatus_F_contig15292.3731.1 vs. uniprot
Match: UPI0008119F0F (probable E3 ubiquitin-protein ligase makorin-1 n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI0008119F0F)

HSP 1 Score: 75.5 bits (184), Expect = 1.560e-14
Identity = 35/87 (40.23%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:  103 QSRSAECGICLEKVRKLGKVKDRVFGILVSCKHVYCLGCIREWR----DKSENHECPECGVPSSLVIPSKTLVTDPDRKKRLALELR 351
            +S+   CGICL+ +      KDR FGIL +C HVYC+ CIR WR    DK     CP+C + S  +IPS+    + + K +L  E +
Sbjct:    9 RSKDLTCGICLDVIMDKDSRKDRRFGILENCLHVYCIECIRTWRNSNFDKKNKRGCPQCRIKSHFIIPSEYFYDEKEDKVKLINEYK 95
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BLAST of mRNA_E-fasciculatus_F_contig15292.3731.1 vs. uniprot
Match: A0A024G2Q9_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G2Q9_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.970e-14
Identity = 45/108 (41.67%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:   28 SHAREGLDEDEAAAREAALDKAERIQSRSAECGICLEKVRKLGKVKDRVFGILVSCKHVYCLGCIREWRDKSEN-----HECPECGVPSSLVIPSKTLVTDPDRKKRL 336
            SH+ E  DE +A   E  L + E   S  AEC IC E++      K   FG+L  C HV+CL CIR WRD S+       +CP C V ++ +IPS  +VT+P+RK+ L
Sbjct:  210 SHSLEVPDESDA---EHQLMEEELKASAEAECNICYEQIL----AKHERFGLLSGCDHVFCLSCIRNWRDHSDQPKQNIRQCPVCRVETAYIIPSSRMVTNPERKQAL 310
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BLAST of mRNA_E-fasciculatus_F_contig15292.3731.1 vs. uniprot
Match: UPI000B3E3013 (probable E3 ubiquitin-protein ligase makorin-1 isoform X3 n=1 Tax=Numida meleagris TaxID=8996 RepID=UPI000B3E3013)

HSP 1 Score: 76.3 bits (186), Expect = 2.330e-14
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:   97 RIQSRSAECGICLEKVRKLGKVKDRVFGILVSCKHVYCLGCIREWR-----DKSENHECPECGVPSSLVIPSKTLVTDPDRKKRL 336
            R  S +  CGIC+E+V      ++R+FGIL SC H +CLGCIR WR      ++    CPEC + S   IP K  V+D D K++L
Sbjct:   64 RAHSEAVVCGICMEQVYGKALPEERLFGILPSCSHAFCLGCIRTWRRSRDFPRAVIKACPECRLTSPYYIPHKYWVSDGDEKQQL 148
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BLAST of mRNA_E-fasciculatus_F_contig15292.3731.1 vs. uniprot
Match: G5C337_HETGA (RING-type E3 ubiquitin transferase n=1 Tax=Heterocephalus glaber TaxID=10181 RepID=G5C337_HETGA)

HSP 1 Score: 76.6 bits (187), Expect = 2.440e-14
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:  103 QSRSAECGICLEKVRKLGKVKDRVFGILVSCKHVYCLGCIREWR-----DKSENHECPECGVPSSLVIPSKTLVTDPDRKKRL 336
            +S+   CGIC+E V +  + + R FGIL +C H+YCL CIR+WR     ++     CP+C + S  V+PS+  V D + K++L
Sbjct:  142 RSKDLACGICMEVVYQKAQPRQRSFGILPNCSHIYCLQCIRQWRRAKDFERKVTKACPQCRISSPFVVPSEYWVEDREEKQKL 224
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BLAST of mRNA_E-fasciculatus_F_contig15292.3731.1 vs. uniprot
Match: A0A8J4X8T8_CLAMG (E3 ubiquitin-protein ligase makorin-2 (Fragment) n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4X8T8_CLAMG)

HSP 1 Score: 77.4 bits (189), Expect = 2.910e-14
Identity = 40/87 (45.98%), Postives = 47/87 (54.02%), Query Frame = 1 
Query:  106 SRSAECGICLEKVRKLGKVKDRVFGILVSCKHVYCLGCIREWR-----DKSENHECPECGVPSSLVIPSKTLVTDPDRKKRLALELR 351
            S+   C IC+E V +     +R FGIL SC H YCLGCIR+WR     D      CPEC V S  VIPS   V D + K RL  E +
Sbjct:  262 SQEKVCSICMEVVYEKASPSERRFGILSSCCHTYCLGCIRQWRCAKQFDNKIIKSCPECRVVSEFVIPSMYWVEDQEEKNRLIEEFK 348
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BLAST of mRNA_E-fasciculatus_F_contig15292.3731.1 vs. uniprot
Match: A0A2Y9DE71_TRIMA (RING-type E3 ubiquitin transferase n=1 Tax=Trichechus manatus latirostris TaxID=127582 RepID=A0A2Y9DE71_TRIMA)

HSP 1 Score: 77.4 bits (189), Expect = 3.410e-14
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:  121 CGICLEKVRKLGKVKDRVFGILVSCKHVYCLGCIREWRDKS--ENH---ECPECGVPSSLVIPSKTLVTDPDRKKRL 336
            CGIC+E V +     DR FGIL +C H YCL CIR WR     EN     CP+C VPS LVIPS+  V + ++K++L
Sbjct:  290 CGICMEVVYEKANPSDRRFGILSNCSHTYCLKCIRVWRRAKHFENRIVKSCPQCRVPSDLVIPSEFWVEEEEKKQKL 366
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BLAST of mRNA_E-fasciculatus_F_contig15292.3731.1 vs. uniprot
Match: UPI000B3DC8E0 (probable E3 ubiquitin-protein ligase makorin-1 isoform X2 n=1 Tax=Numida meleagris TaxID=8996 RepID=UPI000B3DC8E0)

HSP 1 Score: 76.3 bits (186), Expect = 5.540e-14
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:   97 RIQSRSAECGICLEKVRKLGKVKDRVFGILVSCKHVYCLGCIREWR-----DKSENHECPECGVPSSLVIPSKTLVTDPDRKKRL 336
            R  S +  CGIC+E+V      ++R+FGIL SC H +CLGCIR WR      ++    CPEC + S   IP K  V+D D K++L
Sbjct:  149 RAHSEAVVCGICMEQVYGKALPEERLFGILPSCSHAFCLGCIRTWRRSRDFPRAVIKACPECRLTSPYYIPHKYWVSDGDEKQQL 233
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15292.3731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G211_ECTSI1.170e-6388.79RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5L7F8_9PHAE3.040e-6085.34RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A0P7WW93_SCLFO1.180e-1446.46E3 ubiquitin-protein ligase makorin-2 n=2 Tax=Scle... [more]
UPI0008119F0F1.560e-1440.23probable E3 ubiquitin-protein ligase makorin-1 n=1... [more]
A0A024G2Q9_9STRA1.970e-1441.67RING-type E3 ubiquitin transferase n=1 Tax=Albugo ... [more]
UPI000B3E30132.330e-1443.53probable E3 ubiquitin-protein ligase makorin-1 iso... [more]
G5C337_HETGA2.440e-1439.76RING-type E3 ubiquitin transferase n=1 Tax=Heteroc... [more]
A0A8J4X8T8_CLAMG2.910e-1445.98E3 ubiquitin-protein ligase makorin-2 (Fragment) n... [more]
A0A2Y9DE71_TRIMA3.410e-1449.35RING-type E3 ubiquitin transferase n=1 Tax=Trichec... [more]
UPI000B3DC8E05.540e-1443.53probable E3 ubiquitin-protein ligase makorin-1 iso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15292contigE-fasciculatus_F_contig15292:1038..2691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.7
Seed ortholog evalue3.8e-52
Seed eggNOG ortholog2880.D7G211
Preferred nameFANCE
KEGG koko:K10892,ko:K14404
KEGG Pathwayko03015,ko03460,ko05164,map03015,map03460,map05164
KEGG ModuleM00413
EggNOG free text desc.protein ubiquitination
EggNOG OGsKOG1039@1,KOG1039@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-07_003370.1
Exons3
Model size357
Cds size357
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15292.3731.1prot_E-fasciculatus_F_contig15292.3731.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15292 1038..2691 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928009.1614132-CDS-E-fasciculatus_F_contig15292:1037..11541622928009.1614132-CDS-E-fasciculatus_F_contig15292:1037..1154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15292 1038..1154 -
1695995787.0736039-CDS-E-fasciculatus_F_contig15292:1037..11541695995787.0736039-CDS-E-fasciculatus_F_contig15292:1037..1154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15292 1038..1154 -
1622928009.1765342-CDS-E-fasciculatus_F_contig15292:1984..21191622928009.1765342-CDS-E-fasciculatus_F_contig15292:1984..2119Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15292 1985..2119 -
1695995787.0848002-CDS-E-fasciculatus_F_contig15292:1984..21191695995787.0848002-CDS-E-fasciculatus_F_contig15292:1984..2119Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15292 1985..2119 -
1622928009.1970906-CDS-E-fasciculatus_F_contig15292:2586..26911622928009.1970906-CDS-E-fasciculatus_F_contig15292:2586..2691Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15292 2587..2691 -
1695995787.0952601-CDS-E-fasciculatus_F_contig15292:2586..26911695995787.0952601-CDS-E-fasciculatus_F_contig15292:2586..2691Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15292 2587..2691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15292.3731.1

>prot_E-fasciculatus_F_contig15292.3731.1 ID=prot_E-fasciculatus_F_contig15292.3731.1|Name=mRNA_E-fasciculatus_F_contig15292.3731.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=119bp
QRGVANEPSSHAREGLDEDEAAAREAALDKAERIQSRSAECGICLEKVRK
LGKVKDRVFGILVSCKHVYCLGCIREWRDKSENHECPECGVPSSLVIPSK
TLVTDPDRKKRLALELRL*
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mRNA from alignment at E-fasciculatus_F_contig15292:1038..2691-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15292.3731.1 ID=mRNA_E-fasciculatus_F_contig15292.3731.1|Name=mRNA_E-fasciculatus_F_contig15292.3731.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1654bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15292:1038..2691- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGAGGGGCGTGGCGAACGAGCCATCATCCCACGCGCGCGAGGGTTTGGA
CGAGGACGAGGCGGCCGCTAGGGAAGCGGCCCTAGACAAGGCGGAGAGGA
TTCAGGTAAAAACTCGCGTCCTCGGCTGGGTGCTCGACACGTTTTTTCGG
ACGTCGCGGTTTTGGTCCTTCTTGAGGTACTCCACTCCTGGTTCGAAGGG
CGCGTGAAGGTCGTCGGAGGTGTCGCGTGTTTGCACATCCGGCGTCGGTT
CACCACCTGCTATATACTACTTTGTTTTAAGTCTTTCAGAAGGTTATCGT
TGCGATGTGAATGTTCTCGGTAGCGCTGTTTTTTTGTCCGACTTTTGTGG
CGTTTTTCTGCGCGACCTGTTTTCCTTCTGGGCCCAGGGCTGTTGAAACT
TTATCTACGGCGATGCTTGGTCCATCACGAACGATGTTGCAATCCTACCG
CGGTGTTGGGCTGTCGTTCAACACCACGATGTTGTGTTTCTACCGCGTTT
CTGGGCTGTCGTTCAACGTCCCCCCCCCCCCCCCCCCCCCCCGTCTCTGT
CGAATGGATGATGACCGGGCAGTCTCGAAGCGCGGAGTGCGGCATCTGCC
TCGAAAAAGTGCGAAAGCTTGGGAAGGTCAAGGACAGGGTCTTCGGCATC
CTCGTGAGCTGCAAGCACGTCTACTGCCTCGGCTGCATTCGGGAGTGGCG
AGACAAGGTACTATGCACAGCAGTTAATTTTCGTTTGCCCTATCCTCGCC
CCCTGTCTCGCCCTCAATCCACGTCCGTGTTGTAGAGAACGAGCAGGGGT
ACCCTTGTCCGGGGATGAAATAGATGGTTGTTCTGCCGCAAGGGGACCGG
TGGTTGTGATGGGCTTGTGTGTTATCTCAGTCAGTTGTGCATCCGGGCGT
GGCTGGTACTAGTTTTTTTTATTACTATTCCGTTACGCTACTACACAGCA
ATACATAAAACATTGCACAAACGTGCACTTTATTTACGCGCCAGTCGCTT
CTGCCGACCAGTCGTTTGTCCGCCTGGGTTGCATCATGTTGACGGAAATC
CTCGTTGTTAATTAGTGACACATCATGATAGCGCGTTCACTGCAACGGCG
TTTTTTTCTCAGCCCGACCGACCCCTCCCTCCACGGCACGAACCTTGTTA
GTGTCCAAAAGGCTGGAAATGAGACGAGTCGTTGGGGGAATCTTAATCTT
GTCTTGAGTCATGTTGGTTGTTGGGTGACTGACTACTGCTGTAGCTTTTT
TCCCACCCTCAGCCGGCCCGAGACGGTGTGCCCTGCTCGTCATATAATCT
GTGCAGAGTAGTGTGCTTGCCCTGACAGCGCAACACTGCATGGCATGGCA
CATGTACCACCCTCGAGGATGGCGCTGCGGAGAGTAACGGCATTCCGACG
CGGCAACACACAACGAAATACTCACTCACGCACTCACTACTGTCTTGCTT
GTCGATGATTTTCGCACTTTTTTTTCGTCATTTGGCCTTGTTTTTTTTCT
CCGGCAATCGGGCCGTCTTCCTTCGCCGTTTGTCCAGAGCGAGAACCACG
AGTGCCCGGAGTGCGGTGTTCCCTCGTCGCTCGTGATTCCGAGCAAGACT
CTCGTGACGGACCCCGACAGAAAGAAACGCCTGGCGTTGGAACTCCGCCT
CTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15292:1038..2691-

>mRNA_E-fasciculatus_F_contig15292.3731.1 ID=mRNA_E-fasciculatus_F_contig15292.3731.1|Name=mRNA_E-fasciculatus_F_contig15292.3731.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=714bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15292:1038..2691- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGAGGGGCGTGGCGAACGAGCCATCATCCCACGCGCGCGAGGGTTTGGA
CGAGGACGAGGCGGCCGCTAGGGAAGCGGCCCTAGACAAGGCGGAGAGGA
TTCAGCAGAGGGGCGTGGCGAACGAGCCATCATCCCACGCGCGCGAGGGT
TTGGACGAGGACGAGGCGGCCGCTAGGGAAGCGGCCCTAGACAAGGCGGA
GAGGATTCAGTCTCGAAGCGCGGAGTGCGGCATCTGCCTCGAAAAAGTGC
GAAAGCTTGGGAAGGTCAAGGACAGGGTCTTCGGCATCCTCGTGAGCTGC
AAGCACGTCTACTGCCTCGGCTGCATTCGGGAGTGGCGAGACAAGTCTCG
AAGCGCGGAGTGCGGCATCTGCCTCGAAAAAGTGCGAAAGCTTGGGAAGG
TCAAGGACAGGGTCTTCGGCATCCTCGTGAGCTGCAAGCACGTCTACTGC
CTCGGCTGCATTCGGGAGTGGCGAGACAAGAGCGAGAACCACGAGTGCCC
GGAGTGCGGTGTTCCCTCGTCGCTCGTGATTCCGAGCAAGACTCTCGTGA
CGGACCCCGACAGAAAGAAACGCCTGGCGTTGGAACTCCGCCTCTAAAGC
GAGAACCACGAGTGCCCGGAGTGCGGTGTTCCCTCGTCGCTCGTGATTCC
GAGCAAGACTCTCGTGACGGACCCCGACAGAAAGAAACGCCTGGCGTTGG
AACTCCGCCTCTAA
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