mRNA_E-fasciculatus_F_contig1529.3726.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1529.3726.1
Unique NamemRNA_E-fasciculatus_F_contig1529.3726.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1529.3726.1 vs. uniprot
Match: D7FQB6_ECTSI (Ribosomal_S17_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB6_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 4.700e-120
Identity = 172/179 (96.09%), Postives = 174/179 (97.21%), Query Frame = 2 
Query:   35 GSLALTGHRFLAPPDYKEAEQHEKAYQKQDAIFVGAKRVLGKKATKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEACINTAVSVRKQFRMF 571
            GSLALTGHRFL PPDY+EAEQHEKAYQKQDAIFVGAKRVLGKK  K KGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLH+VSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHE CINTAVSVRKQFRMF
Sbjct:   13 GSLALTGHRFLVPPDYREAEQHEKAYQKQDAIFVGAKRVLGKKVAKSKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCINTAVSVRKQFRMF 191
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1529.3726.1 vs. uniprot
Match: A0A835Z9X9_9STRA (Ribosomal protein S17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X9_9STRA)

HSP 1 Score: 274 bits (700), Expect = 1.750e-89
Identity = 131/165 (79.39%), Postives = 148/165 (89.70%), Query Frame = 2 
Query:   77 DYKEAEQHEKAYQKQDAIFVGAKRVLGKKATKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEACINTAVSVRKQFRMF 571
            +YKEAEQ EKAYQKQDA+F+ AKRV+GKK  KG  MRF KN+GLGFKTPK A  GTYVDKKCPFTG+VSIRGRILKGLV+SAGKM NT VIRRDYLHYV+KYRRFEKRHKN+ VH +PC+ NVKEGDI+T+GQCRPLSKT+RFN LEHE CINT++SV+KQFRMF
Sbjct:    2 EYKEAEQTEKAYQKQDAVFIAAKRVIGKKTKKG--MRFYKNIGLGFKTPKLAISGTYVDKKCPFTGNVSIRGRILKGLVLSAGKMKNTCVIRRDYLHYVTKYRRFEKRHKNLMVHLSPCFPNVKEGDILTVGQCRPLSKTIRFNALEHEPCINTSISVKKQFRMF 164
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BLAST of mRNA_E-fasciculatus_F_contig1529.3726.1 vs. uniprot
Match: A0A7S2XWS0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWS0_9STRA)

HSP 1 Score: 263 bits (673), Expect = 2.240e-85
Identity = 127/165 (76.97%), Postives = 146/165 (88.48%), Query Frame = 2 
Query:   77 DYKEAEQHEKAYQKQDAIFVGAKRVLGKKATKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEACINTAVSVRKQFRMF 571
            +YKEA+QHEKAYQKQDA+F+  KRV+GKK+ KG  MRF KN+GLGFKTPK A EGTYVDKKCPFTG+VSIRGRILKGLVIS  KM NTI++RRDYLHY+SKYRRFEKRHKNM VH +PC+  +KEGD+VTIGQCRPLSKTVRFNVLEH   +N A++V+KQFRMF
Sbjct:    4 EYKEADQHEKAYQKQDAVFIAKKRVIGKKSRKG--MRFYKNIGLGFKTPKLAIEGTYVDKKCPFTGNVSIRGRILKGLVIST-KMKNTIIVRRDYLHYISKYRRFEKRHKNMAVHASPCFDTIKEGDVVTIGQCRPLSKTVRFNVLEHLPSVNQALNVKKQFRMF 165
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BLAST of mRNA_E-fasciculatus_F_contig1529.3726.1 vs. uniprot
Match: A0A7R9U3I9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3I9_9STRA)

HSP 1 Score: 248 bits (633), Expect = 5.200e-79
Identity = 119/169 (70.41%), Postives = 145/169 (85.80%), Query Frame = 2 
Query:   65 LAPPDYKEAEQHEKAYQKQDAIFVGAKRVLGKKATKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEACINTAVSVRKQFRMF 571
            +AP +Y+EAEQ EKAYQKQDA+FVG KR L +   KG  MR+VKN+GLGFKTP+ A EG YVD+KCPFTG+VSIRG+ILKG+VIS  KMT T+V+RRDYLH+V KY+R+EKRHKNMTVHC+P + NVK GD+VT+GQCRPLSKT+RFNVL HE  +N +VSV+KQFR+F
Sbjct:   21 MAPKNYREAEQTEKAYQKQDAVFVGTKRSLVRVGKKG--MRYVKNIGLGFKTPQRAIEGNYVDRKCPFTGNVSIRGKILKGIVIS-NKMTRTVVVRRDYLHFVRKYKRYEKRHKNMTVHCSPAFTNVKPGDVVTVGQCRPLSKTIRFNVLVHEPAVNQSVSVKKQFRVF 186
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BLAST of mRNA_E-fasciculatus_F_contig1529.3726.1 vs. uniprot
Match: F0XZW5_AURAN (Ribosomal_S17_N domain-containing protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=F0XZW5_AURAN)

HSP 1 Score: 246 bits (629), Expect = 1.110e-78
Identity = 119/164 (72.56%), Postives = 144/164 (87.80%), Query Frame = 2 
Query:   80 YKEAEQHEKAYQKQDAIFVGAKRVLGKKATKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEACINTAVSVRKQFRMF 571
            ++EAEQ EKAYQKQDA+F+G KR L KK+ KG  MR+V+NVGLGFKTPK A EG+YVDKKCPFTG+VSIRGRILKG+VIS  KM  T+VIRRDYL++  KYRRFEKRHKNM+VHC+PC++NVKEGDIVT+GQCRPL+KTVRFNVL HE  +N +++V+K FR+F
Sbjct:    7 FREAEQTEKAYQKQDAVFIGRKRALAKKSKKG--MRYVRNVGLGFKTPKLALEGSYVDKKCPFTGNVSIRGRILKGMVIST-KMKRTLVIRRDYLNWCGKYRRFEKRHKNMSVHCSPCFENVKEGDIVTVGQCRPLTKTVRFNVLTHEPAVNQSLNVKKVFRVF 167
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BLAST of mRNA_E-fasciculatus_F_contig1529.3726.1 vs. uniprot
Match: A0A7S0L9L5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L9L5_9EUKA)

HSP 1 Score: 241 bits (615), Expect = 1.310e-76
Identity = 119/165 (72.12%), Postives = 142/165 (86.06%), Query Frame = 2 
Query:   77 DYKEAEQHEKAYQKQDAIFVGAKRVLGKKATKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEACINTAVSVRKQFRMF 571
            D+KEA+Q EKAYQKQDAIF+G KRVLGKK++K KGMR+ KN+GLGFKTP  A EG+YVDKKCPFTG+VSIRGRILKG+V+S  KM  T+VIRRDYL Y+SKYRRF K+H NM+VHC+P + NV EGDIVT+GQCRPL+KTVRFNV+EH    N AV+V+K FR+F
Sbjct:    2 DFKEADQTEKAYQKQDAIFIGRKRVLGKKSSK-KGMRYYKNIGLGFKTPTEAIEGSYVDKKCPFTGNVSIRGRILKGMVVS-NKMKRTVVIRRDYLKYISKYRRFCKKHTNMSVHCSPAFLNVGEGDIVTVGQCRPLAKTVRFNVIEHFPATNKAVNVKKMFRVF 164
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BLAST of mRNA_E-fasciculatus_F_contig1529.3726.1 vs. uniprot
Match: A0A7S1XVW4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVW4_9STRA)

HSP 1 Score: 241 bits (615), Expect = 1.410e-76
Identity = 116/169 (68.64%), Postives = 144/169 (85.21%), Query Frame = 2 
Query:   65 LAPPDYKEAEQHEKAYQKQDAIFVGAKRVLGKKATKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEACINTAVSVRKQFRMF 571
            +AP +Y+EAEQ EKAYQKQDA+FVG KR L +   KG  +R+VK++GLGFKTP+TA  G+YVDKKCPFTG+VSIRG+ILKG+VIS  KM  TIV+RRDYLH+V KY+R+EKRHKN+T HC+PC+ NVK GD+VTIGQCRPL+KT+RFNVL HE   N +V+V+KQFR+F
Sbjct:    1 MAPKNYREAEQVEKAYQKQDAVFVGTKRSLVRSGKKG--IRYVKSIGLGFKTPETAISGSYVDKKCPFTGNVSIRGKILKGVVIS-NKMKRTIVVRRDYLHFVRKYKRYEKRHKNVTAHCSPCFVNVKPGDVVTIGQCRPLAKTIRFNVLTHEPSTNQSVNVKKQFRVF 166
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BLAST of mRNA_E-fasciculatus_F_contig1529.3726.1 vs. uniprot
Match: A0A7S4WCA2_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4WCA2_9DINO)

HSP 1 Score: 239 bits (609), Expect = 1.100e-75
Identity = 117/165 (70.91%), Postives = 135/165 (81.82%), Query Frame = 2 
Query:   77 DYKEAEQHEKAYQKQDAIFVGAKRVLGKKATKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEACINTAVSVRKQFRMF 571
            +YKEAEQ EKAYQKQD +F+  K   G K  K   MR+ KNVGLG KTPK A EGTYVDKKCPFTGDV+IRGRILKGLVIS  KMT TI++RRDYLHY+ KYRR+EKRHKN+ VHC+P +  V EGD+VTIGQCRPLSKTVRFNV+EH   +N A++V+KQFRMF
Sbjct:    4 EYKEAEQTEKAYQKQDGVFIARKNKAGAKNPKP--MRWTKNVGLGIKTPKNAVEGTYVDKKCPFTGDVAIRGRILKGLVIST-KMTRTIIVRRDYLHYIRKYRRYEKRHKNVAVHCSPAFDTVSEGDVVTIGQCRPLSKTVRFNVIEHLPTVNKAINVKKQFRMF 165
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BLAST of mRNA_E-fasciculatus_F_contig1529.3726.1 vs. uniprot
Match: A0A7S2S9B4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S9B4_9STRA)

HSP 1 Score: 238 bits (606), Expect = 3.340e-75
Identity = 120/170 (70.59%), Postives = 142/170 (83.53%), Query Frame = 2 
Query:   65 LAPPDYKEAEQHEKAYQKQDAIFVGAKRVLGKKATKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEA-CINTAVSVRKQFRMF 571
            +AP +YKEAEQ EKAYQKQDAIF+G KRVL K+  +GKG RF KNVGLGFKTPK A EG +VDKKCPFTG+VSIRGR++K +VIS  KM NT+++RRDYL +V KYRRFEKRH NM  H +P ++NVKEGDIV+IGQCRPLSKTVRFNVLE EA   + AV+++K FRMF
Sbjct:    1 MAPVEYKEAEQTEKAYQKQDAIFIGKKRVLSKQ--RGKGFRFYKNVGLGFKTPKKAIEGNFVDKKCPFTGNVSIRGRVMKAMVIST-KMKNTVIVRRDYLRFVKKYRRFEKRHTNMAAHLSPAFENVKEGDIVSIGQCRPLSKTVRFNVLEVEAGASDRAVNIKKSFRMF 167
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1529.3726.1 vs. uniprot
Match: A0A7S3PX81_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PX81_9STRA)

HSP 1 Score: 226 bits (576), Expect = 1.110e-70
Identity = 114/165 (69.09%), Postives = 136/165 (82.42%), Query Frame = 2 
Query:   77 DYKEAEQHEKAYQKQDAIFVGAKRVLGKKATKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEACINTAVSVRKQFRMF 571
            +YKE +QHEK+YQ QDAIFV  KRV+G    + K MRF ++VGLG KTP  A EGTYVDKKCPFTG+V+IRGRILKGLVIS  KM NT+VIRRDYLHY++KYRRFEKRHKN++ HC P + NVKEGD+VTIG+CRPLSKTV+FNV+ HEA +N A + +K FR F
Sbjct:    7 EYKECDQHEKSYQSQDAIFVARKRVVG--GARQKPMRFTRSVGLGIKTPDAAIEGTYVDKKCPFTGNVAIRGRILKGLVIS-NKMKNTVVIRRDYLHYITKYRRFEKRHKNISAHCTPAF-NVKEGDVVTIGECRPLSKTVKFNVIAHEAAVN-AKAGKKTFRTF 166
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1529.3726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB6_ECTSI4.700e-12096.09Ribosomal_S17_N domain-containing protein n=1 Tax=... [more]
A0A835Z9X9_9STRA1.750e-8979.39Ribosomal protein S17-domain-containing protein n=... [more]
A0A7S2XWS0_9STRA2.240e-8576.97Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9U3I9_9STRA5.200e-7970.41Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0XZW5_AURAN1.110e-7872.56Ribosomal_S17_N domain-containing protein n=3 Tax=... [more]
A0A7S0L9L5_9EUKA1.310e-7672.12Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S1XVW4_9STRA1.410e-7668.64Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4WCA2_9DINO1.100e-7570.91Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S2S9B4_9STRA3.340e-7570.59Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3PX81_9STRA1.110e-7069.09Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1529contigE-fasciculatus_F_contig1529:5052..11772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score354.0
Seed ortholog evalue4.3e-95
Seed eggNOG ortholog2880.D7FQB6
Preferred nameRPS11
KEGG koko:K02949
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0186@1,KOG1728@2759
Ec32 ortholog descriptionRibosomal protein S17
Ec32 orthologEc-01_006720.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categorymitochondrion
Exons7
Model size1009
Cds size561
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928008.681502-UTR-E-fasciculatus_F_contig1529:5051..54861622928008.681502-UTR-E-fasciculatus_F_contig1529:5051..5486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1529 5052..5486 -
1695995786.8320327-UTR-E-fasciculatus_F_contig1529:5051..54861695995786.8320327-UTR-E-fasciculatus_F_contig1529:5051..5486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1529 5052..5486 -
1622928008.8168283-UTR-E-fasciculatus_F_contig1529:11759..117721622928008.8168283-UTR-E-fasciculatus_F_contig1529:11759..11772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1529 11760..11772 -
1695995786.9066331-UTR-E-fasciculatus_F_contig1529:11759..117721695995786.9066331-UTR-E-fasciculatus_F_contig1529:11759..11772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1529 11760..11772 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928008.6930308-CDS-E-fasciculatus_F_contig1529:5486..55221622928008.6930308-CDS-E-fasciculatus_F_contig1529:5486..5522Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 5487..5522 -
1695995786.842645-CDS-E-fasciculatus_F_contig1529:5486..55221695995786.842645-CDS-E-fasciculatus_F_contig1529:5486..5522Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 5487..5522 -
1622928008.7102377-CDS-E-fasciculatus_F_contig1529:6002..61531622928008.7102377-CDS-E-fasciculatus_F_contig1529:6002..6153Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 6003..6153 -
1695995786.850531-CDS-E-fasciculatus_F_contig1529:6002..61531695995786.850531-CDS-E-fasciculatus_F_contig1529:6002..6153Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 6003..6153 -
1622928008.725782-CDS-E-fasciculatus_F_contig1529:6623..67061622928008.725782-CDS-E-fasciculatus_F_contig1529:6623..6706Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 6624..6706 -
1695995786.8588812-CDS-E-fasciculatus_F_contig1529:6623..67061695995786.8588812-CDS-E-fasciculatus_F_contig1529:6623..6706Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 6624..6706 -
1622928008.7407103-CDS-E-fasciculatus_F_contig1529:7280..74121622928008.7407103-CDS-E-fasciculatus_F_contig1529:7280..7412Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 7281..7412 -
1695995786.8683684-CDS-E-fasciculatus_F_contig1529:7280..74121695995786.8683684-CDS-E-fasciculatus_F_contig1529:7280..7412Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 7281..7412 -
1622928008.7637835-CDS-E-fasciculatus_F_contig1529:10390..104651622928008.7637835-CDS-E-fasciculatus_F_contig1529:10390..10465Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 10391..10465 -
1695995786.8778596-CDS-E-fasciculatus_F_contig1529:10390..104651695995786.8778596-CDS-E-fasciculatus_F_contig1529:10390..10465Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 10391..10465 -
1622928008.779372-CDS-E-fasciculatus_F_contig1529:11385..114061622928008.779372-CDS-E-fasciculatus_F_contig1529:11385..11406Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 11386..11406 -
1695995786.8887224-CDS-E-fasciculatus_F_contig1529:11385..114061695995786.8887224-CDS-E-fasciculatus_F_contig1529:11385..11406Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 11386..11406 -
1622928008.8002536-CDS-E-fasciculatus_F_contig1529:11696..117591622928008.8002536-CDS-E-fasciculatus_F_contig1529:11696..11759Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 11697..11759 -
1695995786.8982122-CDS-E-fasciculatus_F_contig1529:11696..117591695995786.8982122-CDS-E-fasciculatus_F_contig1529:11696..11759Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 11697..11759 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1529.3726.1prot_E-fasciculatus_F_contig1529.3726.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1529 5487..11759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1529.3726.1

>prot_E-fasciculatus_F_contig1529.3726.1 ID=prot_E-fasciculatus_F_contig1529.3726.1|Name=mRNA_E-fasciculatus_F_contig1529.3726.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=187bp
MAVIRGAGSLALTGHRFLAPPDYKEAEQHEKAYQKQDAIFVGAKRVLGKK
ATKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLV
ISAGKMTNTIVIRRDYLHYVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIV
TIGQCRPLSKTVRFNVLEHEACINTAVSVRKQFRMF*
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mRNA from alignment at E-fasciculatus_F_contig1529:5052..11772-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1529.3726.1 ID=mRNA_E-fasciculatus_F_contig1529.3726.1|Name=mRNA_E-fasciculatus_F_contig1529.3726.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6721bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1529:5052..11772- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATATTGCCTCTGGATGGCCGTGATCCGTGGTGCGGGGAGCCTGGCATTGA
CAGGGCATCGCTTCCTTGCACCTCCGGTGAGCACGGCGCGCTTGCCTCAG
GGGTAGATAGTGAGTGATGCCTTGTGTTTGCTCTGTCGCTAGAGGGACCA
AAAGAACTGTGGTGATGGCAACCCATTGGTACGTGGGTGGTGGGTCGCGT
GAGCGATGGCCCTACTCCCTCTCCCACCCAGATCAGAGAGAGCATCGCTG
AACGCGGTCCTTGTTGGTTGACCTGCTGCATGCATTGAGCCTGTGTCCTG
ATCAACCCTGTTGTCCCATGCATGCCGTGTTCGTTTTGTTGATAAAAAGG
CACCATGGGACTCCAGGACTACAAGGAGGCTGAACAGGTGTGTTTGGTGT
TGATGGCTCGCTCGTGTAGCCAAGGGCGTATGGGTGGTGTTGGCGTGGGA
GAGCAGCACGGGCAATGGACGGTCTGCCTCGAGCGCAGCACTTGTCGATG
GTTTGCTCGATGGTGCTCATTGCCCCTCTCTGATTCTGTACACACGGCCA
TCGTGTTTGGATTACGTATCCCGAACATTTGAGCCCTCTCAAAACGATGT
GGCGTGGAAAGCGCGCGGTGGGGTCGCATGGTACTTCGAAGTACATCATC
TGTATCGCGGGACTGAGATGTATCAGCGTCCTTCACCGTCGTACAGCAGT
ATTCGAAGAGAGCTAGCTAAATGGAGACAAAGTAGCTGTTGCAGGTGTAG
TTGTTCCTTGCTTTTTGCTGTCACAGCAGCCATGAGCCGTGGCTGCGGGT
TGCGCCGCCACTGGGACGCACTTTCTCCTTGTCCGTGTGTTATTGTTGAC
TGCTGTGTAAGAAGCGCGCAAGAAGCGCGCGGCAGGTGAAGATGCTGGCT
CTCTGTTACATGTCCCAACACTGCTGTTCAGCGTAGCAGCATTCGACCTT
CAATCCATTGCGCAACGATCCCGTTGAATTTTCAAGGTCTAGTCTAAAAC
GAAACCACCGGCATATCCAGCAGCACCGCCGTATCCACGACCTACTGCTG
TAAAAACTGATATTCTACTTGTAAAGTACGAAATACATACCACATTTGTC
AGGCCCGACGTCCGACTTCGGGTGTGCCTGCCTCGATCATCCAGGACAAT
GCGATGACTTCTGCCCAACGAAATGGTCTGTGGCTCCTTTCTTGGAACTA
CATACTTTGAAGTAGCATGAGTGGTGACTGTCGAAGCCGACCCAACAAAG
TAACTCGGAACAACCGCCGCATTGCCTGTACTTGGCGCCCACTTTTCCCA
CACACAGCACGAGAAGGCGTACCAGAAGCAGGATGCCATCTTTGTGGGAG
CGAAGCGTGTTCTCGGCAAGAAGGCCACCAAGGTAAGCCCCCGCGTGAAA
AGGTTGCGTTGCTGGTTTCAAGGGTAAGTGCAGGTAGTCTGATGAACCTG
TTCCCGCTGTGCTGCCACGTCGTCGAGCCAGAGGGGCTGGTGTTGCCGAA
ACGATGCTGTGTTGGTGACTGAACCCAACCCGTGTCGCAACACCGCGAGA
TGGGCATCCCCGCTGCTAAGCTAAAAGCGGCCTTTCGTGTAAGTTCGACG
GTTATGTACCGGGTCGGAAAAGAGTTTATAACTTCCATCGCAAGCTGCCA
AGTGCTGCCTTTCGAGTCTAGACTGCTCCATCTCGAATGGTCAGCCAGAA
TGCGTTCATGAACATCTACATCTGGAACAAACGTGCACATTGACCACTCG
AGCACTGCTGTAGTGTTCTTGCTGGAGAGCAGTGCAGGCCTGTTATCTCT
TCGGAGCTTGAGAGTGGCCGCGCAAGGTCCTTGTCGTCGAATGAAAGCCG
ACTAGAATGAGCTTTTTCTTTATATGTTGTATCTTTCCTGTCTACCGGCA
AGTAGGTCCGCCTACTTTTACTTCGTAGGGTTGTGGGTTTCACATCGAGG
GAGGGAACCTACTATACTAGTGAAGTGCACCAAATTCCCACAGCTGTGTC
TACTCCTATCCATAGGAGGTTGATAACCTTCTTAGTTCCGCAGCTGCGTC
GAGGCCGCGTCCACCCATGTAGGTAGCGTAGGTTCTCGGAAGGACCGAGC
TGTGGCATCTTTTCCACAGACGTCAACCCGTGACCGGAATAGGAGACGGT
CGGGTTGGATTTGGATTTGGGGCATAGGGCTGCTGGCGGTGACGAAATGA
AACGGACTAGAGTTTCTGAAACCAGCTCAAGCTGGATTTGAAGATACAAC
CCTTGGCTGTCCGAGCCTTTGCAGACCAGTACCCCTTTTATATTTTCTTC
GCCATTTGCCGGCAAAACGGAATCAGTCGTTATTTTGGTGGAAGGCATGT
GCTGTTTGTAGAGCTGCAGCGACACCGAAACCCCTTGTGACAAAATAAGC
AATAGCGTGTCTAAAAGACAACGGCGAATCACAGCAGTAGTATTATACAA
TGTCAGAGTTTTGTTTTGCGTTTGGCCGCTTGGCTGTTCGAAGACAACGT
GTCTCAACAAACCCCGGCCTTTTCTAGCCCATGCCAGAATCCTCACCCAT
TGTGAGTTTTCGCTGCGCGGTTTGCTTTGTTGTGGTCGGGAAGGTGTTGG
GGGGTGGGTCTACGGAAACGGTATCGATGACTGCTAGTTGTACCGTCACC
GTGAAAAGAGCAGCAGCAAGCTGATCGGTATCGTCGTTGTTCCCACCAAG
GCAAAGGTCAATAATTTTTCGTTGGGCGCGTGCCAGGGCAATTAGGGGGC
CATGACGAAATGAAGTAAACGGACTAGAGTTTCAGATCAGCCTCTTGGCT
GTTTGAAGACAGCGTGCTTTTTGACCGAGCCCTTCCGCCCGGCGCCCCAT
AGCGTAATTTAAACTCTCTTGCCGCGTAGAATACCTTGACGCAACACAAC
TGTGTAGTGTCGGGTTCGGTTTTGGAGTGGAGTGTACGAAAAAGAGCGTG
GTTTGTTGTGAACATTGGCGTCATGTACGCTGCAGACGGGTTTTCGAGTC
TACAGCAGTACGATAGAATCGCAGTTTCATGGCGTAACAAAACCGCTCTC
GAGGATGCTAGAAGATGCTGGCTTGCCGACCCCTTCCCATCGGGGGAGTG
TGGCACAAAGCGCTGAAATATGTGGTGTGTGGAGAACAGAGGGCAAGGCT
GTGAAGAAACAGAGTAAACGGACTAGAGTTTCAGACCAGCCTCCAGGCTG
TTTGAAGACAACGTGCTTATCGTCCGAGCCTTGGTATCCTTTTCGCACTC
GACGTCCCCCCACGCCCCCGAGACTTGCTTGTCGGCTTGTTGGGCCTTGC
TTCCAAGTGGGTAGGTATTGTTGTGGCAGATGTATCGTAGGAAGATGTCT
TTTGTAGCAGAGTAGCTTGATGTATTGATAGCTTTGTGAGTCAGTGTTTC
CATTATGAAGCATCGTAGACAAAATGCTGGCGGTACCTTGTGGTATAGCG
GGTGGTGTAGGAGAGCAGAAGGCAGGGCTATGACGAAATGAAGTAAACGG
ACTAGAGTTTCAGATCAGCCAATAGGCTGCTTGAAGACAACGTGCTCTTT
GTCCGAGCCTTGCTACCATCTCCTGCCTTTCCCCTCCACCCGGCTATGGC
GGCACCCGCAATGTAGATAGCAAGTTTTGAAGAATTTTTGACCCGTTCCT
TCAAAATCAAACACCTCCTGCTTTGCGGACATCTCTTGTTCGAGCACAGA
TGCAGGTTGTTGTTGCTTTCCGTTCTTCTCTTGTCTTGATTAACGCTTTC
CCAAACCAACTCTCACACAGATCCCTAGCACACACGATCACCAGACCGTC
CCAACACTGAGCAGAGGGGCACATGCCTCGGCATTTAGCCCGATATTGCA
TGACGTCACGTCATAGCATCTGACGGCGCCAAACAACCATGGTTGAGCAC
GTTCACAAGTCTTCCTCCAAATACGATGGCAGTGTGCGGTCAAAGGGAAG
GTGCGAGGAACGTGCACGTTGACCCCCCTCCCCAGGCCCTCCCTTCTTTA
TTCGGGTCGAGGGTGCTCCGCTCCGCACCGCCTCTCTCTCACGAGTACGG
TCACGGACGTTGTCGACCTTGCTCGCTGGAGAAGATAAAGATATGGACGT
GCTTTTTCTTTGTTGACGACTGTCGCACGATCGACATCCGTCCGGTGTCT
GTGCATCATTGTCTTGAATTGGTTTTGTTCTTTTGTGTTCATCCGGCACG
TTGGTTCCCTCGATAGAGGGCCGCCGAGATTGATTGGGCGTGTACAATGT
GCATTTTGTGTTCTGCGTGCCCCCCCCTCTTGCCCTCCCACCCACCCGTT
GGCTGTCGCTGCCCCCTCTGATCGTTTCTTTCTTCTCGTCTCTCTCTTAT
GATGACGCAGGGCAAGGGCATGCGGTTCGTGAAGAACGTCGGCCTCGGCT
TCAAGACCCCCAAGACCGCGCGGGAAGGCACCTACGTGGACAAGAAGTGC
CCCTTCACGGGCGACGTGTCCATCCGCGGCCGCATCCTCAAGGTGATTTT
TAACTTTTTTGTTGCGTTTGTTTTTTGGCACGTGCTTGGAAAACGCCCCC
GAACCCCGGCGGCAACGCCCGCCAGCGGAAGCCTGCGGCGCCACCATATC
GGCGCCTGTGTTTGGGATGGGATGCGTGGCTATTGCGAACCCACAAACAG
CCGCACCGCCTTGAACACACAGCCTGCCCTGAGGGAGTACGAAACGCTTG
CTTGAATTTGGTCGCCGTTTTGTGGCGTCTGTGGTTGGCTTGTGTAGCTC
GCGTCGGTAGGTTCGCATAACTGGCATCAACCGCTCGCATGGAAACGCCT
GCGCATGACGAAGATGAAATGGGGTTCGCTCCTGGCAAAGGATTACCAGA
GGCTGCTTGCCGCCTTTGTGTTTCGGCCCCAAGCGCAGTATTTGAAAACG
TTGTTTTGTTGTTCCAAAATTAACCCATTTTGTGTGTGTAGAGGACCAAC
AACGGATACGGCATGCTTGCAGGCCTGATCGTTTTGGGCTCGTTGGTTAG
ATTTTTTTCGTGTCGGGTTGTTCTCATGTTCATCGTCCTCTTTCGTTCCA
CCCCATCTGCCGCCAGGGCCTGGTCATCTCCGCCGGCAAGATGACCAACA
CCATCGTCATCAGGCGTGACTACCTCCACTACGTATCCAAGTACCGCCGG
TGAGCCGAGCACGCGTGCACCCACCGCGGGCATTGGTACCCAATCGGTCG
CCTGGGGTCGATGAATTCTTGGTGTGGTAGGCAGTAGTTGTGCGTGTTGT
GACAATGTCGGCTGCGCCCTTGACATGGCTGATGGGGTGTGTGGTGTATG
AGTTGCTGCTGGCTGAAGACGGGAAAGCCTGAGCCGCGTTTATAAAGGGT
TCCTTTCGTCCTCAGGAGGATGCCTCGTGGGCCTGAATGAGACGGTGTAG
GGCGGGCCGTAAAAGGATTTTATTCCCGTCGTTGCTACGCTTGACTCCTT
GTCTTGTACCCACGGGTCAGCAGATGTCCACGAAGCCGAGAATCGGGCCG
GTTCGCAATCGTCCGTTGTGTTTACCCGCCAGCACTGCCGTCTTCGTGGA
CGCCCTCGCTCGGTCAACTCACCTTGACGTTTGTTTTCCCTCCCAACGTG
CGCGGTTGATGACACCCAGTTTCGAGAAGAGGCACAAGAACATGACCGTG
CACTGCGCTCCCTGCTGGCAAAACGTGAAGGAGGGCGACATCGTCACGAT
CGGGCAGTGCCGGCCTCTGTCCAAGACCGTGCGCTTCAACGTGCTCGAGC
ACGAGGCGTGCATCAACACGGTGAGGAAACACAGCCAAGCCGGCGAGCAG
AGTGACAAGAATTGACTAGTGGACAAGAGAACGGGTGTGGGGTGGGGGAA
GGGGCAAAGGAGGCAGGTGGACACACGATGAGACCGGAATAAGGACGGGA
AAAAGCCACAAGAGGGTTGCTGCTACAGGCTCTCACGTATTTTAGTGGTG
ATTTCTCCTATTTATAGTTCTTTTCGTTGTACGGCCGGCAGTTGCTTGAC
GGTATTGGCCATCGCAGCGTGGTTTCTTCGCATCCAGCTCACCGTCTACA
TGACAGATTCCGCACTTGGAGGTTGCTACGGTGCACAAGCACCGTATACT
TGGCGGACCCGCTCGTATTGAGATTCAGTTTCCTCCTGACGCATCTTTTT
TTGTTGTCTGCTTTATAACTTTCTCTAACTCACCTTCCGCCTTTCTCTCC
CGGTCCGCCTCTTTTTTGTTTTTTTCCGGCGCGTGTTTCTTGCTTGACAG
GCTGTGTCCGTGAGGAAGCAGTTCCGTATGTTCTAAGAAACGTCTTGCCG
CGTCTGTGCGGAACACCTTGCTAGGGGGAAGGGTAACGTTCGAAGGAAGC
CGTCGATGAAGGAAGAAAGCGAAGCTGCCTGCGCACACCCCTGGGGTTCA
GCCGTGACGGGCGGAAGCTGTCGATTTTGTCGTCAGCACTTTTGTCCTGC
CGCGCGTTGATGCTCTTGTAGGCGGTGGATTCTTGACTTGCGGCAGTTGT
CGCCGAGTCGCTAGTTCTGCTGTTTGATGGTATTGCGTTTCATGCGCTCG
TTCTTCTTTGTCTAGGGCGAAGTAGTGGCGAGTGCATCCCTCAAAGCATG
GGTCAGGTGCCCTGTCAAAAAAAAAATGTTGACCAAAATGTTCCGGTTTC
TGAGGCTGTGTAAGAGCGAGGACAACCTTTGCGCTACCTACACGACGCTT
GGCGGGTGAACAAGTTCCACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1529:5052..11772-

>mRNA_E-fasciculatus_F_contig1529.3726.1 ID=mRNA_E-fasciculatus_F_contig1529.3726.1|Name=mRNA_E-fasciculatus_F_contig1529.3726.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1122bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1529:5052..11772- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCGTGATCCGTGGTGCGGGGAGCCTGGCATTGACAGGGCATCGCTT
CCTTGCACCTCCGATGGCCGTGATCCGTGGTGCGGGGAGCCTGGCATTGA
CAGGGCATCGCTTCCTTGCACCTCCGGACTACAAGGAGGCTGAACAGGAC
TACAAGGAGGCTGAACAGCACGAGAAGGCGTACCAGAAGCAGGATGCCAT
CTTTGTGGGAGCGAAGCGTGTTCTCGGCAAGAAGGCCACCAAGCACGAGA
AGGCGTACCAGAAGCAGGATGCCATCTTTGTGGGAGCGAAGCGTGTTCTC
GGCAAGAAGGCCACCAAGGGCAAGGGCATGCGGTTCGTGAAGAACGTCGG
CCTCGGCTTCAAGACCCCCAAGACCGCGCGGGAAGGCACCTACGTGGACA
AGAAGTGCCCCTTCACGGGCGACGTGTCCATCCGCGGCCGCATCCTCAAG
GGCAAGGGCATGCGGTTCGTGAAGAACGTCGGCCTCGGCTTCAAGACCCC
CAAGACCGCGCGGGAAGGCACCTACGTGGACAAGAAGTGCCCCTTCACGG
GCGACGTGTCCATCCGCGGCCGCATCCTCAAGGGCCTGGTCATCTCCGCC
GGCAAGATGACCAACACCATCGTCATCAGGCGTGACTACCTCCACTACGT
ATCCAAGTACCGCCGGGCCTGGTCATCTCCGCCGGCAAGATGACCAACAC
CATCGTCATCAGGCGTGACTACCTCCACTACGTATCCAAGTACCGCCGTT
TCGAGAAGAGGCACAAGAACATGACCGTGCACTGCGCTCCCTGCTGGCAA
AACGTGAAGGAGGGCGACATCGTCACGATCGGGCAGTGCCGGCCTCTGTC
CAAGACCGTGCGCTTCAACGTGCTCGAGCACGAGGCGTGCATCAACACGT
TTCGAGAAGAGGCACAAGAACATGACCGTGCACTGCGCTCCCTGCTGGCA
AAACGTGAAGGAGGGCGACATCGTCACGATCGGGCAGTGCCGGCCTCTGT
CCAAGACCGTGCGCTTCAACGTGCTCGAGCACGAGGCGTGCATCAACACG
GCTGTGTCCGTGAGGAAGCAGTTCCGTATGTTCTAAGCTGTGTCCGTGAG
GAAGCAGTTCCGTATGTTCTAA
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