mRNA_E-fasciculatus_F_contig1529.3725.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1529.3725.1 vs. uniprot
Match: D7FQB5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB5_ECTSI) HSP 1 Score: 468 bits (1203), Expect = 1.030e-162 Identity = 251/276 (90.94%), Postives = 255/276 (92.39%), Query Frame = 3
Query: 51 MSNLGAPPSSWSASRLSSWLGEDDKLDPEAIDALALCDVDGRMFLEMDEEDLAESDELGLDMKSIHAFLKLQADLEALELTHHGERPPLPGSSVLPFNTTNPSPRAPLPAXXXXXXXXXXXXXAGSSGEPPRT-SGESSVGGSXXXXXXSSWLLPCVSVDAEGNSFFCDRKVALGAGTTGSGIGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVGGKSRKSLFLVLPDDFKLG 875
MSNLGAPPSSWSASRLS+WLGED+KL+PEAIDALALCDVDGRMFLEMDEEDLAESDELGLDMKSIHAFLKLQADLEALEL+HHGERPPLPGSSVLPFNT NP PR P XXXXXXXXXXX AGSSGEPP T GESSVGG SW LPCVSVDAEGNSFFCDRKVALGAGTTGSGIGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAV GKSRKSLFLVLPDDFKLG
Sbjct: 1 MSNLGAPPSSWSASRLSAWLGEDEKLNPEAIDALALCDVDGRMFLEMDEEDLAESDELGLDMKSIHAFLKLQADLEALELSHHGERPPLPGSSVLPFNTANPQPR---PXXXXXXXXXXXXETAGSSGEPPCTLGGESSVGGCGSGGGSRSWSLPCVSVDAEGNSFFCDRKVALGAGTTGSGIGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVDGKSRKSLFLVLPDDFKLG 273
BLAST of mRNA_E-fasciculatus_F_contig1529.3725.1 vs. uniprot
Match: A0A7S4C942_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C942_9EUGL) HSP 1 Score: 130 bits (326), Expect = 5.310e-33 Identity = 58/110 (52.73%), Postives = 77/110 (70.00%), Query Frame = 3
Query: 495 SSWLLPCVSVDAEGNSFFCDRKVALGAGTTGSGIGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVGG 824
S W++P V+VD G S++ + LGA + IGALSE++ T ++ RETPGDY FD+HCAP +Q +V+LD VD+EV+DGTR+V AG + EDTWG GH SRAV G
Sbjct: 12 SEWVIPVVAVDEAGKSYWSSMTIPLGASGGANSIGALSEVMKVTTMQIRETPGDYKFDWHCAPRKQFIVNLDGAVDVEVSDGTRKVVSAGEMFFVEDTWGTGHLSRAVNG 121
BLAST of mRNA_E-fasciculatus_F_contig1529.3725.1 vs. uniprot
Match: A0A7S1NNL2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NNL2_9EUGL) HSP 1 Score: 119 bits (299), Expect = 2.980e-29 Identity = 54/109 (49.54%), Postives = 78/109 (71.56%), Query Frame = 3
Query: 534 GNSFFCDRKVALGAGTTGSGIGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVGGKSRKSLFLVLPD 860
G+S+F + + LG + IG+LS +P TGL R+TP DYDFD+H AP +Q VV+LD V+IEV+DG+++V AG + L EDT G+GHRS++V G+ R+SLF+ + D
Sbjct: 1 GHSYFTTKSIPLGPSHGPNSIGSLSAAMPVTGLVVRDTPADYDFDWHVAPRKQFVVNLDAAVEIEVSDGSKKVLGAGEMFLLEDTEGQGHRSKSVNGQPRRSLFITVAD 109
BLAST of mRNA_E-fasciculatus_F_contig1529.3725.1 vs. uniprot
Match: A0A835Z6U7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U7_9STRA) HSP 1 Score: 119 bits (299), Expect = 1.030e-27 Identity = 52/73 (71.23%), Postives = 59/73 (80.82%), Query Frame = 3
Query: 645 TPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVGGKSRKSLFLVLPDD 863
TPGDYDFDFH AP RQ +VSLD GVDIE + G RR FPAGTVM EDTWG+GHRSRAVGG +R +F+ +PDD
Sbjct: 162 TPGDYDFDFHVAPRRQFIVSLDAGVDIETSSGERRAFPAGTVMFVEDTWGRGHRSRAVGGAARHCVFIGVPDD 234
BLAST of mRNA_E-fasciculatus_F_contig1529.3725.1 vs. uniprot
Match: A0A7Y4TWR8_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y4TWR8_9DELT) HSP 1 Score: 115 bits (287), Expect = 1.940e-27 Identity = 60/113 (53.10%), Postives = 77/113 (68.14%), Query Frame = 3
Query: 516 VSVDAEGNSFFCDRKVALGAGTTGSGIGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVGGKSRKSLFLVL 854
V A+ S F D ++ L +G G +S+L TG+ FRET GDY+FDFH AP RQ VV+L+ V+IEV DGT+R+ G ++LAEDT G+GH SRAVGGK RKSLF+ L
Sbjct: 6 VYTGADNKSHFEDVEIPL---KSGGKAGFMSDLQKATGVIFRETGGDYNFDFHNAPRRQYVVNLEGEVEIEVGDGTKRILRTGDILLAEDTTGQGHISRAVGGKPRKSLFITL 115
BLAST of mRNA_E-fasciculatus_F_contig1529.3725.1 vs. uniprot
Match: A0A2E1A164_9DELT (Uncharacterized protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E1A164_9DELT) HSP 1 Score: 114 bits (286), Expect = 2.710e-27 Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 3
Query: 594 IGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVGGKSRKSLFLVL 854
IG LS+LIP TG+ FRET GDY +++H AP RQ +V L+ VDIEV DGTRRVF G ++LAEDT G+GH SRAV G+ RKSLFL L
Sbjct: 29 IGKLSKLIPATGVIFRETSGDYHYEWHNAPRRQYIVMLEGEVDIEVGDGTRRVFQTGDLLLAEDTTGQGHLSRAVKGQPRKSLFLTL 115
BLAST of mRNA_E-fasciculatus_F_contig1529.3725.1 vs. uniprot
Match: UPI00096B5534 (uncharacterized protein LOC109581817 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096B5534) HSP 1 Score: 114 bits (284), Expect = 1.020e-26 Identity = 55/117 (47.01%), Postives = 77/117 (65.81%), Query Frame = 3
Query: 531 EGNSFFCDRKVALGAGTTGSG-IGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVGGKSRKSLFLVLPDDFKLGT 878
+G S F K+ + G G IG++S++IP+TGL FRETP Y++ +H AP RQ +V+LD V + V+ G +R+ G V EDT GKGH S +V GK R+S+FL +PDD+KL T
Sbjct: 25 DGESHFGTVKIKM----KGKGDIGSISDIIPSTGLMFRETPSSYNYSWHTAPRRQFIVNLDASVQVTVSSGEKRILKEGEVFFVEDTTGKGHFSESVDGKVRRSVFLPVPDDYKLPT 137
BLAST of mRNA_E-fasciculatus_F_contig1529.3725.1 vs. uniprot
Match: A0A7C8CI49_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C8CI49_9DELT) HSP 1 Score: 112 bits (281), Expect = 1.410e-26 Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 3
Query: 594 IGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVGGKSRKSLFLVL 854
IG++S L TG+ FRET GDYDF FH AP RQ V++L+ GV+IEV DGTRR+ AG V+LAEDT G+GH SRAV G+ R+S+F+ L
Sbjct: 29 IGSISSLEGATGIAFRETEGDYDFGFHNAPRRQYVINLNAGVEIEVGDGTRRLLGAGEVLLAEDTTGRGHISRAVDGRPRRSIFVTL 115
BLAST of mRNA_E-fasciculatus_F_contig1529.3725.1 vs. uniprot
Match: A0A7C7YFX1_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7YFX1_9DELT) HSP 1 Score: 112 bits (281), Expect = 1.410e-26 Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 3
Query: 594 IGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVGGKSRKSLFLVL 854
IG +S L P TG+ FRET GDYDF FH AP RQ V++LD V++E DGT+RV G V+LAEDT G+GHRSRAV G+ R+S+F+ L
Sbjct: 29 IGRISTLEPATGIVFRETEGDYDFGFHNAPRRQYVINLDAAVELETGDGTKRVVGPGEVLLAEDTTGRGHRSRAVDGRPRRSIFVTL 115
BLAST of mRNA_E-fasciculatus_F_contig1529.3725.1 vs. uniprot
Match: A0A1F9A150_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium RBG_13_43_22 TaxID=1797825 RepID=A0A1F9A150_9DELT) HSP 1 Score: 112 bits (281), Expect = 1.410e-26 Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 3
Query: 540 SFFCDRKVALGAGTTGSGIGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVGGKSRKSLFLVL 854
S F D + L G G G +SEL+ G+ FRET G Y++DFH AP RQ VV+L V+IEV DGT+R+F +G + LAEDT G+GH+SRAVGGK RKSLF+ L
Sbjct: 14 SHFEDLDIPLKDGGKG---GLMSELMKAGGIIFRETDGSYNYDFHNAPRRQYVVNLKGEVEIEVGDGTKRIFGSGDIFLAEDTTGQGHKSRAVGGKPRKSLFITL 115 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1529.3725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1529.3725.1 >prot_E-fasciculatus_F_contig1529.3725.1 ID=prot_E-fasciculatus_F_contig1529.3725.1|Name=mRNA_E-fasciculatus_F_contig1529.3725.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=277bp MSNLGAPPSSWSASRLSSWLGEDDKLDPEAIDALALCDVDGRMFLEMDEEback to top mRNA from alignment at E-fasciculatus_F_contig1529:1528..5004+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1529.3725.1 ID=mRNA_E-fasciculatus_F_contig1529.3725.1|Name=mRNA_E-fasciculatus_F_contig1529.3725.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3477bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1529:1528..5004+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1529:1528..5004+ >mRNA_E-fasciculatus_F_contig1529.3725.1 ID=mRNA_E-fasciculatus_F_contig1529.3725.1|Name=mRNA_E-fasciculatus_F_contig1529.3725.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1662bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1529:1528..5004+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |