mRNA_E-fasciculatus_F_contig15286.3724.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15286.3724.1
Unique NamemRNA_E-fasciculatus_F_contig15286.3724.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15286.3724.1 vs. uniprot
Match: A0A6H5KVK1_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVK1_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.720e-45
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:   58 MSTSAHGSTESARSFFDDNSKPQVLQAKLKQTGEALEAFLDDNRGRGRPVVCITAGGTAVPLEANTVRTIDNFSTGRRGAVSAE 309
            MSTSAHGSTE+ARSFFD NSKPQ LQAKLKQTG+ALEAFLDD RGRGRPVVCITAGGTAVPLEANTVRTIDNFSTGRRGA+SAE
Sbjct:    1 MSTSAHGSTETARSFFDGNSKPQTLQAKLKQTGDALEAFLDDQRGRGRPVVCITAGGTAVPLEANTVRTIDNFSTGRRGAISAE 84
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BLAST of mRNA_E-fasciculatus_F_contig15286.3724.1 vs. uniprot
Match: A0A835ZD54_9STRA (DNA/pantothenate metabolism flavoprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD54_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.580e-17
Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:   22 KFLADSQDSAYVMSTSAHGSTESAR--SFFDDNSKPQVLQAKLKQTGEALEAFLDDNRGRGRPVVCITAGGTAVPLEANTVRTIDNFSTGRRGAVSAE 309
            K ++D+Q  A    T     +++A   +FF+D +        LK  GEAL +F+ +    GRP+VC++AGGT VPLEANTVR+IDNFSTG RGA+SAE
Sbjct:    2 KPVSDAQPHAGPTDTQNCTQSDAAEVENFFNDTAS---APPSLKSHGEALASFVGEQISVGRPIVCVSAGGTTVPLEANTVRSIDNFSTGMRGALSAE 96
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BLAST of mRNA_E-fasciculatus_F_contig15286.3724.1 vs. uniprot
Match: A0A3D8QQZ3_9HELO (CoaB-like protein n=2 Tax=Coleophoma TaxID=453209 RepID=A0A3D8QQZ3_9HELO)

HSP 1 Score: 80.5 bits (197), Expect = 1.450e-15
Identity = 47/101 (46.53%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:    7 SVPTDKFLADSQDSAYVMSTSAHGSTESARSFFDDNSKPQVLQAKLKQTGEALEAFLDDNRGRGRPVVCITAGGTAVPLEANTVRTIDNFSTGRRGAVSAE 309
            S PT    +   DS    STS     +  RS+FD N  P  L+   K + +A +AF+D +   GR VV +T+GGT VPLE  TVR IDNFS G RGA SAE
Sbjct:   35 SSPTSSVFSSKSDSTMSSSTSTPDLAQQERSYFDVNPPPAALE---KHSSDA-KAFIDFHTAVGRRVVLVTSGGTTVPLERQTVRFIDNFSAGTRGATSAE 131
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BLAST of mRNA_E-fasciculatus_F_contig15286.3724.1 vs. uniprot
Match: A0A1R1Y1F7_9FUNG (Phosphopantothenate-cysteine ligase CAB2 n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y1F7_9FUNG)

HSP 1 Score: 73.2 bits (178), Expect = 4.340e-14
Identity = 40/85 (47.06%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:   55 VMSTSAHGSTESARSFFDDNSKPQVLQAKLKQTGEALEAFLDDNRGRGRPVVCITAGGTAVPLEANTVRTIDNFSTGRRGAVSAE 309
            V S S      +  SFF DNS P+ +   +  T    + F+ DN    R +  IT+GGT VPLE NTVR IDNFS G RGA+SAE
Sbjct:   18 VGSLSPTSMLNAQESFFADNSPPENIDEIIAGT----QKFIQDNLANSRKIALITSGGTTVPLEKNTVRFIDNFSVGTRGAISAE 98
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BLAST of mRNA_E-fasciculatus_F_contig15286.3724.1 vs. uniprot
Match: S3DE49_GLAL2 (CoaB-like protein n=1 Tax=Glarea lozoyensis (strain ATCC 20868 / MF5171) TaxID=1116229 RepID=S3DE49_GLAL2)

HSP 1 Score: 74.3 bits (181), Expect = 2.360e-13
Identity = 45/107 (42.06%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:    7 SVPTDKFLADSQDSAYVMSTSAHGSTESA------RSFFDDNSKPQVLQAKLKQTGEALEAFLDDNRGRGRPVVCITAGGTAVPLEANTVRTIDNFSTGRRGAVSAE 309
            S PT    +DS +     ++S   ST         R +F++N  P  L+   KQ  E    F+D +   GR VV +T+GGT VPLE  TVR IDNFS G RGA SAE
Sbjct:   50 SSPTSSVFSDSSEITMSSASSRPDSTRQTSADVAERDYFNENPAPASLEKYTKQAKE----FIDFHAAAGRRVVLVTSGGTTVPLERQTVRFIDNFSAGTRGATSAE 152
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BLAST of mRNA_E-fasciculatus_F_contig15286.3724.1 vs. uniprot
Match: A0A6U7DKI9_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A6U7DKI9_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 3.410e-13
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:  151 TGEALEAFLDDNRGRGRPVVCITAGGTAVPLEANTVRTIDNFSTGRRGAVSAE 309
            T + L AF+  +R  GR +VC+T+GGT VPLE NTVR IDNFSTG RGA +AE
Sbjct:   10 TSQQLSAFVASHRAEGRRIVCVTSGGTTVPLERNTVRFIDNFSTGNRGAAAAE 62
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BLAST of mRNA_E-fasciculatus_F_contig15286.3724.1 vs. uniprot
Match: A0A7S0DHP1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DHP1_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 4.490e-13
Identity = 36/70 (51.43%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:  100 FFDDNSKPQVLQAKLKQTGEALEAFLDDNRGRGRPVVCITAGGTAVPLEANTVRTIDNFSTGRRGAVSAE 309
            FF  N  P+      K+    +E F+  N+  GR +VC+T GGT VPLE NTVR IDNFSTGRR A+S E
Sbjct:   41 FFAKNDPPESYDKIEKE----MEEFVRKNKSSGRRIVCVTGGGTTVPLERNTVRFIDNFSTGRRAAISVE 106
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BLAST of mRNA_E-fasciculatus_F_contig15286.3724.1 vs. uniprot
Match: K3X666_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X666_GLOUD)

HSP 1 Score: 73.2 bits (178), Expect = 5.280e-13
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   91 ARSFFDDNSKPQVLQAKLKQTGEALEAFLDDNRGRGRPVVCITAGGTAVPLEANTVRTIDNFSTGRRGAVSAE 309
            A ++F   + P+ L    KQ  E LEAFLD +R  G+ V  +T+GGT VPLE NTVR +DNFSTG RGA S E
Sbjct:    9 AAAYFHATTAPKSL----KQRREQLEAFLDHHRVVGKCVAVVTSGGTTVPLEQNTVRFLDNFSTGARGAASTE 77
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BLAST of mRNA_E-fasciculatus_F_contig15286.3724.1 vs. uniprot
Match: A0A6P8I7H4_ACTTE (POU domain, class 2, transcription factor 1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I7H4_ACTTE)

HSP 1 Score: 73.2 bits (178), Expect = 6.520e-13
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:  124 QVLQAKLKQTGEALEAFLDDNRGRGRPVVCITAGGTAVPLEANTVRTIDNFSTGRRGAVSAE 309
            Q   A LK+T   +  F  ++R  GR VV IT+GGTAVPLE+NTVR IDNFS+G RGA SAE
Sbjct:   15 QTAPASLKETKTIVAEFAVNHRAAGRNVVLITSGGTAVPLESNTVRFIDNFSSGTRGAASAE 76
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BLAST of mRNA_E-fasciculatus_F_contig15286.3724.1 vs. uniprot
Match: M4BAW5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BAW5_HYAAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.020e-12
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:  100 FFDDNSKPQVLQAKLKQTGEALEAFLDDNRGRGRPVVCITAGGTAVPLEANTVRTIDNFSTGRRGAVSAE 309
            F D+  +  V   ++ +  E +EAFLD +R  G+ V  +T+GGT VPLE NTVR +DNFSTG RGA S E
Sbjct:   10 FTDEYFRTTVAPKRINEQRERVEAFLDHHRVVGKCVAIVTSGGTTVPLEQNTVRFLDNFSTGSRGAASVE 79
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15286.3724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVK1_9PHAE2.720e-4592.86Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A835ZD54_9STRA8.580e-1747.96DNA/pantothenate metabolism flavoprotein n=1 Tax=T... [more]
A0A3D8QQZ3_9HELO1.450e-1546.53CoaB-like protein n=2 Tax=Coleophoma TaxID=453209 ... [more]
A0A1R1Y1F7_9FUNG4.340e-1447.06Phosphopantothenate-cysteine ligase CAB2 n=1 Tax=S... [more]
S3DE49_GLAL22.360e-1342.06CoaB-like protein n=1 Tax=Glarea lozoyensis (strai... [more]
A0A6U7DKI9_9EUKA3.410e-1362.26Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S0DHP1_9EUKA4.490e-1351.43Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
K3X666_GLOUD5.280e-1353.42Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6P8I7H4_ACTTE6.520e-1359.68POU domain, class 2, transcription factor 1-like n... [more]
M4BAW5_HYAAE1.020e-1250.00Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15286contigE-fasciculatus_F_contig15286:407..2014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.2
Seed ortholog evalue5.1e-37
Seed eggNOG ortholog2880.D8LPT0
KEGG rclassRC00064,RC00090
KEGG koko:K01922,ko:K03128
KEGG ReactionR04230
KEGG Pathwayko00770,ko01100,ko03022,map00770,map01100,map03022
KEGG ModuleM00120
GOsGO:0003674,GO:0003824,GO:0004632,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.phosphopantothenate--cysteine ligase activity
EggNOG OGsCOG0452@1,KOG2728@2759
EC6.3.2.51
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928008.460357-CDS-E-fasciculatus_F_contig15286:406..5831622928008.460357-CDS-E-fasciculatus_F_contig15286:406..583Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15286 407..583 -
1695995786.6947684-CDS-E-fasciculatus_F_contig15286:406..5831695995786.6947684-CDS-E-fasciculatus_F_contig15286:406..583Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15286 407..583 -
1622928008.476518-CDS-E-fasciculatus_F_contig15286:1879..20141622928008.476518-CDS-E-fasciculatus_F_contig15286:1879..2014Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15286 1880..2014 -
1695995786.7164452-CDS-E-fasciculatus_F_contig15286:1879..20141695995786.7164452-CDS-E-fasciculatus_F_contig15286:1879..2014Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15286 1880..2014 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15286.3724.1prot_E-fasciculatus_F_contig15286.3724.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15286 407..2014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15286.3724.1

>prot_E-fasciculatus_F_contig15286.3724.1 ID=prot_E-fasciculatus_F_contig15286.3724.1|Name=mRNA_E-fasciculatus_F_contig15286.3724.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
CSSVPTDKFLADSQDSAYVMSTSAHGSTESARSFFDDNSKPQVLQAKLKQ
TGEALEAFLDDNRGRGRPVVCITAGGTAVPLEANTVRTIDNFSTGRRGAV
SAE*
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mRNA from alignment at E-fasciculatus_F_contig15286:407..2014-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15286.3724.1 ID=mRNA_E-fasciculatus_F_contig15286.3724.1|Name=mRNA_E-fasciculatus_F_contig15286.3724.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1608bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15286:407..2014- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCAGTTCAGTTCCAACTGACAAGTTCCTCGCTGACTCCCAGGACAGCGC
GTACGTCATGTCTACGTCTGCCCACGGAAGCACGGAAAGTGCACGATCCT
TCTTCGATGACAACTCGAAGCCACAGGTTCTTCAGGTGCACAAAACTTTT
TCGTTGCAAACAAACGCAATATGTAGGCGCAACAATCAATCTATGAGATA
CCATCGACACTAGTGCGAGCACGTTGGTTCCGTTGGTTCGATGCATGTGA
GTCACTTTTGGCGAACCAACATTGACATGACATGACATATGACATGTTGT
TTGGAAGCTTCCTTCGCATGGCGAAACTGCCATACATGATTACATGGGCT
GGCTGTGTTGGGCGATGCATCGAAGAATATGATCTGCACTTCCGCGGCAT
GGAAAATGTTTCTTTCACGTCTAAGTACTACTTACGCTGTAGTCTCGTCT
ACGGCCGTATGATAGGAACGGGGTTGCGCAGGACTTCAGCAGTACTACAT
ACAACATACAGCGGTATTCGGTAGAGCCTCCTTTGCTTGCGTTCTCCCTG
CTGAAGTTGGTTGACCTTAAACACTAACACGCTGCAGTTGCAGTTGCAGT
TGCAGTTGCAGCTTAGCACGCACTTTTGGCGTCACAGCAGTCGTACTCAG
TGGCAATTGGAGGTACTCATCTCGGAAATACTATGGTCCCATGCGTTATT
TTAGGTTACATACCCTATATTGTCTCTCACAGAGCAGTGCGCGCCAACCT
ACATAGCAATATCCGCGGTACACTGACGACCTCATATCAACCGGTGGTGC
CCCAGTTCAGCAGTAAACACCCCTCTACATTATATACATTTATGCATACC
ACAGCAGTACCACAGACCAGCGCATGGCCTGCGGAAAAGTACAGTATACA
GTATACTCTATGCCACCGCGTCAGAAACTGCTGCTGCTGTTGTTCGGGCG
GTGTGTACATGGACAATCAGCTCGTCGTCTACACGTAGCCTAACCCTACG
TAAACGTTACCTCCATCGTAGGTATGGTGTTTTGGTACACCCTCGTATTG
TACTCTCGCTCTCTTTTGTTTCGTAGATCTTCCATCGTCGTCAGCATTAG
ACTAAAACATTAAAACAGGGAGAAGACTCGTGCTTGATCGATCATCCCGG
GGACACGGCGGTCGCGGTCATTCCACTCTCCCACCAACCAGCCAGCCTGC
AAACACGCTCGTTACCCCCTCGGGCCGCTCTTCGTGGACCGCCAAGGTTC
ATTGACGACTGCCAAATTCTACCGCGTCCTCCTCCCCCTGCTTTGCATCT
CTTTGTTTACCCTCTCAGCTGTATGCCTCCCCCCCCCCTGGGGTTGATGG
TCTAACGACTAAGGCATGCAAAGCGTGAGAGTAACCCACCCCCCCCCCCC
CCTGGGCCCCCGAAACCACCAATGCGCACAGGCCAAGCTGAAGCAGACGG
GCGAGGCGTTGGAGGCGTTCCTCGACGATAACCGGGGGCGGGGGAGGCCC
GTGGTGTGCATCACCGCCGGGGGCACCGCGGTTCCCTTGGAGGCCAACAC
CGTGCGGACCATCGACAACTTCAGCACCGGTCGACGGGGCGCCGTTTCTG
CAGAGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15286:407..2014-

>mRNA_E-fasciculatus_F_contig15286.3724.1 ID=mRNA_E-fasciculatus_F_contig15286.3724.1|Name=mRNA_E-fasciculatus_F_contig15286.3724.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15286:407..2014- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCAGTTCAGTTCCAACTGACAAGTTCCTCGCTGACTCCCAGGACAGCGC
GTACGTCATGTCTACGTCTGCCCACGGAAGCACGGAAAGTGCACGATCCT
TCTTCGATGACAACTCGAAGCCACAGGTTCTTCAGTGCAGTTCAGTTCCA
ACTGACAAGTTCCTCGCTGACTCCCAGGACAGCGCGTACGTCATGTCTAC
GTCTGCCCACGGAAGCACGGAAAGTGCACGATCCTTCTTCGATGACAACT
CGAAGCCACAGGTTCTTCAGGCCAAGCTGAAGCAGACGGGCGAGGCGTTG
GAGGCGTTCCTCGACGATAACCGGGGGCGGGGGAGGCCCGTGGTGTGCAT
CACCGCCGGGGGCACCGCGGTTCCCTTGGAGGCCAACACCGTGCGGACCA
TCGACAACTTCAGCACCGGTCGACGGGGCGCCGTTTCTGCAGAGTGAGCC
AAGCTGAAGCAGACGGGCGAGGCGTTGGAGGCGTTCCTCGACGATAACCG
GGGGCGGGGGAGGCCCGTGGTGTGCATCACCGCCGGGGGCACCGCGGTTC
CCTTGGAGGCCAACACCGTGCGGACCATCGACAACTTCAGCACCGGTCGA
CGGGGCGCCGTTTCTGCAGAGTGA
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