mRNA_E-fasciculatus_F_contig15268.3714.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15268.3714.1
Unique NamemRNA_E-fasciculatus_F_contig15268.3714.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15268.3714.1 vs. uniprot
Match: A0A6H5KE00_9PHAE (YTH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE00_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 1.270e-64
Identity = 287/416 (68.99%), Postives = 289/416 (69.47%), Query Frame = 1 
Query:    1 YGQSFQQPYNQGGYASKTSQLPHGQLQQPSMNTSYMN-YGSGAGXXXXXXXXXXXXXXPS---------GGWIDGGVRERGGGGFSGLSAEANGFVPSNFTPASGVAGGGEVVGGGMGTASTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAVGGVQPQHQVSGDDAXXXXXXXXXXXXXXX--TTSWADIVRPEGFRSSDQKAXXXXXXXXXXXXXXXXXXXXXXSNEVSAMLNTPGAFPAPGAYSGGGVGYSGLSAGPFAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSSNQVLGVGEEGSTSRGLSVPGDVAXXXXXXXXXXXXXXXXXDAAVVDGGYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VMDGTANGMFPA 1206
            YGQSFQQ YNQGGY SK SQLPHGQLQQP MNTSYMN YGS AG           XXX           GGWIDGG+RERGGGGFSGLSAEANGFVPSNFTPASGVAGGGEV            XXXXXXXXXXXXXXXXXXXXXXXX               X                 XXXXXXXXXXXXX    TTSWADIVRPEGFRSSDQKA          XXXXXXXX    SNEVSAMLNTP AFPAPGA+SGGGVGYSGLSAGPFAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           N  NQVLGVGEEGSTSRGL  PGDVA              XXXDA   DGGYN  XXXXXXXXXXXXXXXXXXXXXXXXXXXX  VMDGTANGMFPA
Sbjct:    4 YGQSFQQSYNQGGYPSKASQLPHGQLQQPPMNTSYMNTYGSVAGGDGSAQTQQPRXXXXXXXXXXXXXXGGWIDGGLRERGGGGFSGLSAEANGFVPSNFTPASGVAGGGEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMPALPTAPSSTATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQKRTTSWADIVRPEGFRSSDQKASAAAAPSSTKXXXXXXXXAAATSNEVSAMLNTPEAFPAPGAFSGGGVGYSGLSAGPFAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLEGPGGNDGNN--NQVLGVGEEGSTSRGLPAPGDVAGDQAKGDAGDQAGAXXXDATAGDGGYNNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMDGTANGMFPA 417
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BLAST of mRNA_E-fasciculatus_F_contig15268.3714.1 vs. uniprot
Match: D7G0F2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F2_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 3.680e-24
Identity = 69/83 (83.13%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:  559 TTSWADIVRPEGFRSSDQKAXXXXXXXXXXXXXXXXXXXXXX--SNEVSAMLNTPGAFPAPGAYSGGGVGYSGLSAGPFAASP 801
            TTSWADIVRPEGFRSSDQKA            XXXXXXXXXX  SNEVSAMLNTPGAFPAPGAYSGGGVGYSGLSAGPFAASP
Sbjct:   10 TTSWADIVRPEGFRSSDQKAAAAAGAAPRSTKXXXXXXXXXXXTSNEVSAMLNTPGAFPAPGAYSGGGVGYSGLSAGPFAASP 92
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15268.3714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KE00_9PHAE1.270e-6468.99YTH domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0F2_ECTSI3.680e-2483.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15268contigE-fasciculatus_F_contig15268:255..3024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_000630.1
Exons5
Model size1330
Cds size1329
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15268.3714.1prot_E-fasciculatus_F_contig15268.3714.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15268 255..3024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928007.355598-CDS-E-fasciculatus_F_contig15268:254..7271622928007.355598-CDS-E-fasciculatus_F_contig15268:254..727Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15268 255..727 -
1695995786.1819987-CDS-E-fasciculatus_F_contig15268:254..7271695995786.1819987-CDS-E-fasciculatus_F_contig15268:254..727Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15268 255..727 -
1622928007.3714678-CDS-E-fasciculatus_F_contig15268:1276..14841622928007.3714678-CDS-E-fasciculatus_F_contig15268:1276..1484Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15268 1277..1484 -
1695995786.192528-CDS-E-fasciculatus_F_contig15268:1276..14841695995786.192528-CDS-E-fasciculatus_F_contig15268:1276..1484Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15268 1277..1484 -
1622928007.3822556-CDS-E-fasciculatus_F_contig15268:1819..21281622928007.3822556-CDS-E-fasciculatus_F_contig15268:1819..2128Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15268 1820..2128 -
1695995786.2019215-CDS-E-fasciculatus_F_contig15268:1819..21281695995786.2019215-CDS-E-fasciculatus_F_contig15268:1819..2128Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15268 1820..2128 -
1622928007.3968394-CDS-E-fasciculatus_F_contig15268:2332..25421622928007.3968394-CDS-E-fasciculatus_F_contig15268:2332..2542Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15268 2333..2542 -
1695995786.2120638-CDS-E-fasciculatus_F_contig15268:2332..25421695995786.2120638-CDS-E-fasciculatus_F_contig15268:2332..2542Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15268 2333..2542 -
1622928007.4079041-CDS-E-fasciculatus_F_contig15268:2895..30241622928007.4079041-CDS-E-fasciculatus_F_contig15268:2895..3024Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15268 2896..3024 -
1695995786.2253165-CDS-E-fasciculatus_F_contig15268:2895..30241695995786.2253165-CDS-E-fasciculatus_F_contig15268:2895..3024Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15268 2896..3024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15268.3714.1

>prot_E-fasciculatus_F_contig15268.3714.1 ID=prot_E-fasciculatus_F_contig15268.3714.1|Name=mRNA_E-fasciculatus_F_contig15268.3714.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=443bp
YGQSFQQPYNQGGYASKTSQLPHGQLQQPSMNTSYMNYGSGAGGDGQAQT
QQPQQQQPSGGWIDGGVRERGGGGFSGLSAEANGFVPSNFTPASGVAGGG
EVVGGGMGTASTQGTGGANNASTMSSAGMGGGAAGVGGDMPALPSAPSST
ATAAVAVGGVQPQHQVSGDDASSSSPPPPPPAAQKRTTSWADIVRPEGFR
SSDQKASAAAASSSAKASTTQSAAAAAASNEVSAMLNTPGAFPAPGAYSG
GGVGYSGLSAGPFAASPPPSSSAAVASSSGRRQQQGAGGGGVANGGGLAG
GGGGNDGNSSNQVLGVGEEGSTSRGLSVPGDVAGDEAKGDAGGQAGAAAG
DAAVVDGGYNNNNGYPPYQQQQQYYQQQQAGGVPVAGGGGVMDGTANGMF
PAAGGNGVPSQQQQQQLVPAMFGNGGGPGGGGGGGAGGSGVGT
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mRNA from alignment at E-fasciculatus_F_contig15268:255..3024-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15268.3714.1 ID=mRNA_E-fasciculatus_F_contig15268.3714.1|Name=mRNA_E-fasciculatus_F_contig15268.3714.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2770bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15268:255..3024- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACGGCCAGTCGTTTCAACAGCCTTACAACCAGGGCGGGTACGCAAGCAA
AACCTCTCAGCTACCCCACGGCCAGCTCCAGCAACCCTCGATGAACACGT
CCTACATGAACTACGGGAGTGGAGCGGGGGTAAGTCATGAAGAGACACAA
GTATTTTGTAGGACACGAGGCGCGTCTTGGCAGTGAGCTCATCTCAGCAT
AGTAGAAGTGTCATCAAAGGGCGTGATGCAAGATGAAAGTAAGGCGTTGT
GTTGGTGTGAATCAGCTGCCAGCGGCCACCGGTGACGTTTCCCAAGCTCG
AACAGCTTACACGGCTCATGTGTTCCTGACTCGAATAGCCCAGCCTAGGT
ACCTCGAACCCAAGAGAGCACTTTACAAATTTAAATTTGTATAGAGTTTC
ATGTCTCCCACCACAATAGCATTCGACAAAGGACAATCGAATCGTCCCTT
ACACCTCTACCTATCCGTCGACCTTCTTTCAGGGAGATGGACAAGCCCAG
ACCCAACAGCCGCAGCAGCAGCAGCCTAGTGGCGGGTGGATCGACGGAGG
CGTGCGCGAGCGCGGGGGCGGGGGATTCTCCGGCCTCTCCGCAGAAGCGA
ACGGCTTTGTGCCCTCCAACTTCACCCCCGCAAGCGGAGTCGCGGGCGGC
GGAGAGGTAGTAGGCGGCGGAATGGGTACCGCTTCGACACAGGTATGTTT
CAATCCGTCGCACGCGACGCTTTTTATGCGTAGGATCCAGTGCGTCATTG
AATGAACCACCTTGTGTTTCGGGAGTTTTTCTATTGCTTTCGAAGTGCAT
TTTTTTTTCTTGGGGTGTGTTGAGGGTCATACGTGTTATCTAAACGTACC
CGTGGACGTCCTGCCCCCCCCCCTCCTTTGCTCGCTTGGCGTATAGGGGA
CGGGGGGTGCCAACAACGCGTCCACGATGTCGTCTGCTGGCATGGGCGGC
GGCGCGGCGGGGGTCGGCGGTGACATGCCCGCCTTGCCCTCGGCGCCTTC
CTCAACGGCGACGGCAGCAGTAGCAGTAGGAGGAGTGCAGCCGCAACACC
AGGTCTCTGGGGATGACGCCTCGTCGTCGTCGCCGCCGCCGCCGCCGCCC
GCGGCCCAGAAGAGGACTACCTCCTGGGCGGATATCGTCCGCCCGGAGGG
ATTTCGATCTTCCGACCAGAAGGCGTCGGCGGCGGCTGCGTCGAGCTCGG
CCAAGGTTAGTGCCTGTATGTATAGGCCACACACCGTCGCCAGAGGCGTT
TGAGCATGCGCCCCCCGCCCCCCATCATGCTTGGTGATGTGAGAGCCGGG
TCCTGTGAGCTCCGTCCCGGCTTTGTAGGGATGCAAGGTCAATGGTCTGA
CACTACGGCATGCACGGCTATGAGAGGACACACACACACACAACCCATGA
CTGCTCTCTTGTGTTTGTGCTTGGCATCGTTGCTCAAAGGCTGCTTGCAA
GGATTGACTTGTTCAAAGAAAATTTCACCCCCCCTTCAACATTGCGGTGT
CTTGTCTGCCTCCCCCCCCGCATGTCACCGCCGTCTACAGGCGTCGACGA
CCCAGTCGGCAGCGGCGGCAGCGGCCTCTAACGAGGTCTCCGCTATGCTC
AACACCCCGGGGGCCTTCCCCGCCCCGGGCGCCTACTCCGGCGGGGGGGT
CGGGTACAGCGGGCTCAGCGCGGGTCCCTTCGCGGCATCGCCCCCCCCCT
CGTCGTCTGCCGCAGTGGCATCGTCTTCTGGGCGGCGGCAACAGCAAGGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTGCTTATCAGCATAGACCGC
GCTGACCGGCTGACCAATGGAAGGATGCCAGTCTTACAACAGTGCGGTGG
AAAACACGAAGTGCTTTCATAGTCGACAATCTAGGACCCTGTGACGGAGC
GTCATGGGGGAGTGAGTCTGCGCTACTCTCCGGATGAAAGACAGATACTG
TAGCAGGCACAGATGCAGTGCGTGTGGATGTGTTGAAGATTCAAAACATT
TCGGTTCTGATAGAGCGGGACGGAGGATCCGGTTTTTGTCGTCAACGTCC
GAGTGGCCTCCTAAGCACTAGCATTCTGTACCGGGTATATTTGTTGATTG
GATGGTACATATAGCTGAGTTGCTGCTGCTGCTGCTGCTGCTGCAGCTGT
GTTTCGGTAACGTCTTCTTATGTTGTTGTCGGCCAGCCGCGGCGGTTGCG
GTACAACTGTTGAGTCCGTGCCAAACGCTACATTTTGACGCAGGGGTGGT
TTTGTCCTCGTCGGCTGTTTTCGGTGTCCTGCTCTGTTCCCGTACAGGTG
CTGGTGGAGGCGGTGTCGCCAACGGAGGAGGGCTGGCGGGTGGCGGCGGC
GGCAATGACGGCAACAGCAGCAACCAGGTTCTCGGGGTCGGGGAAGAAGG
AAGCACCAGCAGAGGGTTGTCCGTGCCGGGAGATGTCGCGGGTGACGAGG
CCAAGGGGGATGCAGGTGGTCAGGCGGGAGCGGCGGCGGGAGATGCTGCG
GTGGTGGATGGAGGCTACAACAACAACAACGGGTACCCGCCATATCAGCA
GCAACAACAGTATTACCAGCAGCAGCAAGCGGGCGGAGTTCCAGTGGCCG
GCGGCGGCGGCGTGATGGACGGAACCGCCAACGGGATGTTCCCCGCTGCA
GGCGGAAACGGCGTCCCATCTCAGCAGCAGCAGCAACAGCTCGTACCCGC
AATGTTTGGGAACGGCGGAGGGCCCGGCGGCGGCGGCGGCGGCGGCGCGG
GTGGTAGCGGCGTTGGCACC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15268:255..3024-

>mRNA_E-fasciculatus_F_contig15268.3714.1 ID=mRNA_E-fasciculatus_F_contig15268.3714.1|Name=mRNA_E-fasciculatus_F_contig15268.3714.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2658bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15268:255..3024- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACGGCCAGTCGTTTCAACAGCCTTACAACCAGGGCGGGTACGCAAGCAA
AACCTCTCAGCTACCCCACGGCCAGCTCCAGCAACCCTCGATGAACACGT
CCTACATGAACTACGGGAGTGGAGCGGGGTACGGCCAGTCGTTTCAACAG
CCTTACAACCAGGGCGGGTACGCAAGCAAAACCTCTCAGCTACCCCACGG
CCAGCTCCAGCAACCCTCGATGAACACGTCCTACATGAACTACGGGAGTG
GAGCGGGGGGAGATGGACAAGCCCAGACCCAACAGCCGCAGCAGCAGCAG
CCTAGTGGCGGGTGGATCGACGGAGGCGTGCGCGAGCGCGGGGGCGGGGG
ATTCTCCGGCCTCTCCGCAGAAGCGAACGGCTTTGTGCCCTCCAACTTCA
CCCCCGCAAGCGGAGTCGCGGGCGGCGGAGAGGTAGTAGGCGGCGGAATG
GGTACCGCTTCGACACAGGGAGATGGACAAGCCCAGACCCAACAGCCGCA
GCAGCAGCAGCCTAGTGGCGGGTGGATCGACGGAGGCGTGCGCGAGCGCG
GGGGCGGGGGATTCTCCGGCCTCTCCGCAGAAGCGAACGGCTTTGTGCCC
TCCAACTTCACCCCCGCAAGCGGAGTCGCGGGCGGCGGAGAGGTAGTAGG
CGGCGGAATGGGTACCGCTTCGACACAGGGGACGGGGGGTGCCAACAACG
CGTCCACGATGTCGTCTGCTGGCATGGGCGGCGGCGCGGCGGGGGTCGGC
GGTGACATGCCCGCCTTGCCCTCGGCGCCTTCCTCAACGGCGACGGCAGC
AGTAGCAGTAGGAGGAGTGCAGCCGCAACACCAGGTCTCTGGGGATGACG
CCTCGTCGTCGTCGCCGCCGCCGCCGCCGCCCGCGGCCCAGAAGAGGACT
ACCTCCTGGGCGGATATCGTCCGCCCGGAGGGATTTCGATCTTCCGACCA
GAAGGCGTCGGCGGCGGCTGCGTCGAGCTCGGCCAAGGGGACGGGGGGTG
CCAACAACGCGTCCACGATGTCGTCTGCTGGCATGGGCGGCGGCGCGGCG
GGGGTCGGCGGTGACATGCCCGCCTTGCCCTCGGCGCCTTCCTCAACGGC
GACGGCAGCAGTAGCAGTAGGAGGAGTGCAGCCGCAACACCAGGTCTCTG
GGGATGACGCCTCGTCGTCGTCGCCGCCGCCGCCGCCGCCCGCGGCCCAG
AAGAGGACTACCTCCTGGGCGGATATCGTCCGCCCGGAGGGATTTCGATC
TTCCGACCAGAAGGCGTCGGCGGCGGCTGCGTCGAGCTCGGCCAAGGCGT
CGACGACCCAGTCGGCAGCGGCGGCAGCGGCCTCTAACGAGGTCTCCGCT
ATGCTCAACACCCCGGGGGCCTTCCCCGCCCCGGGCGCCTACTCCGGCGG
GGGGGTCGGGTACAGCGGGCTCAGCGCGGGTCCCTTCGCGGCATCGCCCC
CCCCCTCGTCGTCTGCCGCAGTGGCATCGTCTTCTGGGCGGCGGCAACAG
CAAGGCGTCGACGACCCAGTCGGCAGCGGCGGCAGCGGCCTCTAACGAGG
TCTCCGCTATGCTCAACACCCCGGGGGCCTTCCCCGCCCCGGGCGCCTAC
TCCGGCGGGGGGGTCGGGTACAGCGGGCTCAGCGCGGGTCCCTTCGCGGC
ATCGCCCCCCCCCTCGTCGTCTGCCGCAGTGGCATCGTCTTCTGGGCGGC
GGCAACAGCAAGGTGCTGGTGGAGGCGGTGTCGCCAACGGAGGAGGGCTG
GCGGGTGGCGGCGGCGGCAATGACGGCAACAGCAGCAACCAGGTTCTCGG
GGTCGGGGAAGAAGGAAGCACCAGCAGAGGGTTGTCCGTGCCGGGAGATG
TCGCGGGTGACGAGGCCAAGGGGGATGCAGGTGGTCAGGCGGGAGCGGCG
GCGGGAGATGCTGCGGTGGTGGATGGAGGCTACAACAACAACAACGGGTA
CCCGCCATATCAGCAGCAACAACAGTATTACCAGCAGCAGCAAGCGGGCG
GAGTTCCAGTGGCCGGCGGCGGCGGCGTGATGGACGGAACCGCCAACGGG
ATGTTCCCCGCTGCAGGCGGAAACGGCGTCCCATCTCAGCAGCAGCAGCA
ACAGCTCGTACCCGCAATGTTTGGGAACGGCGGAGGGCCCGGCGGCGGCG
GCGGCGGCGGCGCGGGTGGTAGCGGCGTTGGCACCGTGCTGGTGGAGGCG
GTGTCGCCAACGGAGGAGGGCTGGCGGGTGGCGGCGGCGGCAATGACGGC
AACAGCAGCAACCAGGTTCTCGGGGTCGGGGAAGAAGGAAGCACCAGCAG
AGGGTTGTCCGTGCCGGGAGATGTCGCGGGTGACGAGGCCAAGGGGGATG
CAGGTGGTCAGGCGGGAGCGGCGGCGGGAGATGCTGCGGTGGTGGATGGA
GGCTACAACAACAACAACGGGTACCCGCCATATCAGCAGCAACAACAGTA
TTACCAGCAGCAGCAAGCGGGCGGAGTTCCAGTGGCCGGCGGCGGCGGCG
TGATGGACGGAACCGCCAACGGGATGTTCCCCGCTGCAGGCGGAAACGGC
GTCCCATCTCAGCAGCAGCAGCAACAGCTCGTACCCGCAATGTTTGGGAA
CGGCGGAGGGCCCGGCGGCGGCGGCGGCGGCGGCGCGGGTGGTAGCGGCG
TTGGCACC
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