mRNA_E-fasciculatus_F_contig15259.3711.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15259.3711.1
Unique NamemRNA_E-fasciculatus_F_contig15259.3711.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15259.3711.1 vs. uniprot
Match: A0A6H5KX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX21_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 8.820e-100
Identity = 216/294 (73.47%), Postives = 227/294 (77.21%), Query Frame = 1 
Query:    1 MASVAALAFCSAAAPSHVRCLGVTGALGTSYWAAALPTSSRATAFPTGSGSSLRSMEYVNVKQGGRSRRRPPLSLTRAGPWSAPPPLPATASRDTAARGRXXXXXXXXXXXXXXXXALPSSIRLLAVARTLLRRVRKATAQPPRTXXXXXXXXXXXXXXXXELPPAQVKHAGLVLVPWLWRPFQQTVVAKSAGGAAAGSVLEVGAKTMSATTTRVTKPALSFVQLQVRREAILAALILIAAPLLLRSWARREAEHHDTLDCRNVVQTYLIASSGWTCAVLAAVAGKPITAVVLQ 882
            MASVAALAFCSAAAPSHV C+G TGAL TS+WAAA PT+S          SSLR  EYVNVK GGRSRRRPPLSLTRAGPWS PPPLPA+A RD+A R R    XXXXXXXXXXXX                             XXXXXXXXXXXX    E PPAQ+KHAGLVLVPWLW PFQQ VVAKSAGGAAAG VLEVGA+TMSATT RVTK ALSFVQLQVRREAIL+ALILI APL+LR WARREAEHHDTL+CRNVVQTYLIASSGW CAVLAAVAGKPI+AVVLQ
Sbjct:    1 MASVAALAFCSAAAPSHVSCMGSTGALSTSHWAAAFPTNSXXXXXXXXXTSSLRPKEYVNVKHGGRSRRRPPLSLTRAGPWSTPPPLPASALRDSAPRERHREEXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXXXXXXXXXXXVAGAERPPAQLKHAGLVLVPWLWWPFQQPVVAKSAGGAAAGPVLEVGARTMSATT-RVTKSALSFVQLQVRREAILSALILIVAPLVLRWWARREAEHHDTLECRNVVQTYLIASSGWVCAVLAAVAGKPISAVVLQ 286
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BLAST of mRNA_E-fasciculatus_F_contig15259.3711.1 vs. uniprot
Match: D7FN96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN96_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 2.150e-35
Identity = 79/87 (90.80%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:  622 MSATTTRVTKPALSFVQLQVRREAILAALILIAAPLLLRSWARREAEHHDTLDCRNVVQTYLIASSGWTCAVLAAVAGKPITAVVLQ 882
            MSATT R TKPALSFVQLQVRREAIL+ALIL+AAPLLLR WARREAEHHDTL+CRNVVQTYLIASSGW CAVLAAVAGKPI+AVVLQ
Sbjct:    1 MSATT-RATKPALSFVQLQVRREAILSALILVAAPLLLRWWARREAEHHDTLECRNVVQTYLIASSGWACAVLAAVAGKPISAVVLQ 86
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15259.3711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX21_9PHAE8.820e-10073.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN96_ECTSI2.150e-3590.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15259contigE-fasciculatus_F_contig15259:971..2855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003470.1
Hectar predicted targeting categorysignal peptide
Exons2
Model size882
Cds size882
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928006.7089999-CDS-E-fasciculatus_F_contig15259:970..16421622928006.7089999-CDS-E-fasciculatus_F_contig15259:970..1642Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15259 971..1642 +
1695995785.873319-CDS-E-fasciculatus_F_contig15259:970..16421695995785.873319-CDS-E-fasciculatus_F_contig15259:970..1642Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15259 971..1642 +
1622928006.724967-CDS-E-fasciculatus_F_contig15259:2645..28551622928006.724967-CDS-E-fasciculatus_F_contig15259:2645..2855Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15259 2646..2855 +
1695995785.8838704-CDS-E-fasciculatus_F_contig15259:2645..28551695995785.8838704-CDS-E-fasciculatus_F_contig15259:2645..2855Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15259 2646..2855 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15259.3711.1prot_E-fasciculatus_F_contig15259.3711.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15259 971..2855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15259.3711.1

>prot_E-fasciculatus_F_contig15259.3711.1 ID=prot_E-fasciculatus_F_contig15259.3711.1|Name=mRNA_E-fasciculatus_F_contig15259.3711.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=294bp
MASVAALAFCSAAAPSHVRCLGVTGALGTSYWAAALPTSSRATAFPTGSG
SSLRSMEYVNVKQGGRSRRRPPLSLTRAGPWSAPPPLPATASRDTAARGR
HREEEEEEEQFQQQQQALPSSIRLLAVARTLLRRVRKATAQPPRTPRPAA
AAAAAVAAEAAELPPAQVKHAGLVLVPWLWRPFQQTVVAKSAGGAAAGSV
LEVGAKTMSATTTRVTKPALSFVQLQVRREAILAALILIAAPLLLRSWAR
REAEHHDTLDCRNVVQTYLIASSGWTCAVLAAVAGKPITAVVLQ
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mRNA from alignment at E-fasciculatus_F_contig15259:971..2855+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15259.3711.1 ID=mRNA_E-fasciculatus_F_contig15259.3711.1|Name=mRNA_E-fasciculatus_F_contig15259.3711.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1885bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15259:971..2855+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGAGCGTTGCGGCCCTCGCGTTCTGTTCCGCTGCCGCTCCGTCCCA
TGTGCGCTGCCTGGGAGTGACTGGTGCGTTAGGCACCAGCTACTGGGCGG
CAGCGCTCCCAACCAGCAGCAGGGCAACAGCGTTCCCGACCGGCAGCGGC
AGCAGCCTGCGGTCGATGGAATACGTCAACGTCAAGCAGGGCGGCCGGAG
CAGACGAAGACCGCCGTTGTCGTTGACCCGGGCGGGGCCATGGTCGGCGC
CGCCGCCACTGCCCGCGACTGCGTCGCGTGACACTGCTGCGCGGGGGAGA
CATCGCGAGGAGGAGGAGGAGGAGGAGCAGTTTCAACAACAACAACAAGC
GCTACCTTCCTCCATCCGGCTGCTTGCGGTTGCGCGTACGTTGTTGCGCC
GCGTCCGCAAAGCCACAGCACAGCCACCACGAACACCAAGGCCAGCCGCG
GCGGCGGCGGCAGCGGTGGCGGCGGAAGCGGCGGAGCTGCCACCCGCTCA
AGTCAAGCACGCGGGGCTTGTGCTGGTGCCGTGGCTGTGGCGGCCCTTCC
AGCAGACCGTCGTCGCCAAGTCCGCTGGAGGTGCGGCGGCGGGGTCGGTG
TTGGAGGTAGGGGCGAAGACGATGTCGGCGACGACGACGCGCGTTACCAA
GCCGGCCCTCTCCTTTGTCCAGGTGAGCATATGCCCCCCCGTGAAGATAT
CCGACTCGTACGCCTCGTTACACGTAGCCGTTGTTTCGGTGTTCTCGTCT
TGGTGAATGCATATATATATACATGCATACCGGCCATGACTTTGGATAGT
AGCTGAGGGACGGCAAGCCATCGGTTTCAGGCACTGGCTGCTTACCCGAG
TTCATGATGCCGCCACTGACTGATGCATCACGCGCGGGCGAACGTCCCTT
GTACGCCAGCCGGGGGAGCTTGGGTCTTGACCTTGCTGGTGGGCGTTAAG
ACCTTGCGTTTTCTCTCACAGGCAGTTGCACACACACGCACACATGAACT
AGAACCGCGTTTGCAATGTGATCATCGGGGCGGGGTAGGTGTGCACTTGA
CTGCACGCGCGTGTTTTCGCTGTCGCAGCTCGTTTCTCGTTTGCAGTCCA
GAGGATGCACCGCAATGTTGTACAGCAAAGACCAACGCGAAGAAATGAAT
CAGATAGCTGGGACAAAAATTAACGAAACCATGCAGCAGTGCTCATTGTT
CTGCGGTTCTGGGCAGAGGTGAGGGTAGGCTGCCCGGTCGAGAGCGCTAT
TGTAGCGACGCGCGTGAAGCACGTAAATACGCCTCTCTGAGCTGCGAAAG
GAACTCATATGCATACATAATAAGCAAACCTAGGTGGCTGAGAATCGGAT
GTGATCCCTGCCATTGCTGATGGAGATGCAGGCGCCCATATGGCCATGCA
ACTTGACGAGCGCGTCATCTCTTCGTTGCCTCCCTGGCCTGTCAACCAGC
ATCGCGCGAGACTTGCATCTCCCACCCAATGCTCTTCGCACTCGATTCGC
TGTCTGCGAGTAGATGGCGAGAGCCCCCACCCAAAACCCGCACCCAGCCT
TTCGTTGGAACCGAAACATCCTCCGCCTATGGAACGCGCAGTGTACGCAT
GCAGGATCGATGACAAAAGCGAAGCTCATCTCACCCCTTCCCGCCATGCG
CCGCACGTGTGAAAAACCTATGTAGCTGCAAGTGCGGCGGGAGGCCATCC
TGGCCGCGCTTATTCTCATCGCGGCCCCTCTTCTGCTGCGGTCGTGGGCG
AGGAGAGAGGCGGAGCACCACGACACGCTGGACTGCCGCAACGTCGTACA
GACGTACCTTATAGCGTCCAGCGGGTGGACGTGTGCGGTGCTAGCAGCGG
TAGCGGGCAAGCCAATAACTGCCGTTGTGCTTCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15259:971..2855+

>mRNA_E-fasciculatus_F_contig15259.3711.1 ID=mRNA_E-fasciculatus_F_contig15259.3711.1|Name=mRNA_E-fasciculatus_F_contig15259.3711.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1764bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15259:971..2855+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGAGCGTTGCGGCCCTCGCGTTCTGTTCCGCTGCCGCTCCGTCCCA
TGTGCGCTGCCTGGGAGTGACTGGTGCGTTAGGCACCAGCTACTGGGCGG
CAGCGCTCCCAACCAGCAGCAGGGCAACAGCGTTCCCGACCGGCAGCGGC
AGCAGCCTGCGGTCGATGGAATACGTCAACGTCAAGCAGGGCGGCCGGAG
CAGACGAAGACCGCCGTTGTCGTTGACCCGGGCGGGGCCATGGTCGGCGC
CGCCGCCACTGCCCGCGACTGCGTCGCGTGACACTGCTGCGCGGGGGAGA
CATCGCGAGGAGGAGGAGGAGGAGGAGCAGTTTCAACAACAACAACAAGC
GCTACCTTCCTCCATCCGGCTGCTTGCGGTTGCGCGTACGTTGTTGCGCC
GCGTCCGCAAAGCCACAGCACAGCCACCACGAACACCAAGGCCAGCCGCG
GCGGCGGCGGCAGCGGTGGCGGCGGAAGCGGCGGAGCTGCCACCCGCTCA
AGTCAAGCACGCGGGGCTTGTGCTGGTGCCGTGGCTGTGGCGGCCCTTCC
AGCAGACCGTCGTCGCCAAGTCCGCTGGAGGTGCGGCGGCGGGGTCGGTG
TTGGAGGTAGGGGCGAAGACGATGTCGGCGACGACGACGCGCGTTACCAA
GCCGGCCCTCTCCTTTGTCCAGATGGCGAGCGTTGCGGCCCTCGCGTTCT
GTTCCGCTGCCGCTCCGTCCCATGTGCGCTGCCTGGGAGTGACTGGTGCG
TTAGGCACCAGCTACTGGGCGGCAGCGCTCCCAACCAGCAGCAGGGCAAC
AGCGTTCCCGACCGGCAGCGGCAGCAGCCTGCGGTCGATGGAATACGTCA
ACGTCAAGCAGGGCGGCCGGAGCAGACGAAGACCGCCGTTGTCGTTGACC
CGGGCGGGGCCATGGTCGGCGCCGCCGCCACTGCCCGCGACTGCGTCGCG
TGACACTGCTGCGCGGGGGAGACATCGCGAGGAGGAGGAGGAGGAGGAGC
AGTTTCAACAACAACAACAAGCGCTACCTTCCTCCATCCGGCTGCTTGCG
GTTGCGCGTACGTTGTTGCGCCGCGTCCGCAAAGCCACAGCACAGCCACC
ACGAACACCAAGGCCAGCCGCGGCGGCGGCGGCAGCGGTGGCGGCGGAAG
CGGCGGAGCTGCCACCCGCTCAAGTCAAGCACGCGGGGCTTGTGCTGGTG
CCGTGGCTGTGGCGGCCCTTCCAGCAGACCGTCGTCGCCAAGTCCGCTGG
AGGTGCGGCGGCGGGGTCGGTGTTGGAGGTAGGGGCGAAGACGATGTCGG
CGACGACGACGCGCGTTACCAAGCCGGCCCTCTCCTTTGTCCAGCTGCAA
GTGCGGCGGGAGGCCATCCTGGCCGCGCTTATTCTCATCGCGGCCCCTCT
TCTGCTGCGGTCGTGGGCGAGGAGAGAGGCGGAGCACCACGACACGCTGG
ACTGCCGCAACGTCGTACAGACGTACCTTATAGCGTCCAGCGGGTGGACG
TGTGCGGTGCTAGCAGCGGTAGCGGGCAAGCCAATAACTGCCGTTGTGCT
TCAGCTGCAAGTGCGGCGGGAGGCCATCCTGGCCGCGCTTATTCTCATCG
CGGCCCCTCTTCTGCTGCGGTCGTGGGCGAGGAGAGAGGCGGAGCACCAC
GACACGCTGGACTGCCGCAACGTCGTACAGACGTACCTTATAGCGTCCAG
CGGGTGGACGTGTGCGGTGCTAGCAGCGGTAGCGGGCAAGCCAATAACTG
CCGTTGTGCTTCAG
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