mRNA_E-fasciculatus_F_contig15249.3706.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15249.3706.1
Unique NamemRNA_E-fasciculatus_F_contig15249.3706.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15249.3706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15249contigE-fasciculatus_F_contig15249:313..1858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size322
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15249.3706.1prot_E-fasciculatus_F_contig15249.3706.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15249 706..1858 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928005.996029-UTR-E-fasciculatus_F_contig15249:312..4381622928005.996029-UTR-E-fasciculatus_F_contig15249:312..438Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15249 313..438 +
1695995785.4350135-UTR-E-fasciculatus_F_contig15249:312..4381695995785.4350135-UTR-E-fasciculatus_F_contig15249:312..438Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15249 313..438 +
1622928006.0098503-UTR-E-fasciculatus_F_contig15249:692..7051622928006.0098503-UTR-E-fasciculatus_F_contig15249:692..705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15249 693..705 +
1695995785.448792-UTR-E-fasciculatus_F_contig15249:692..7051695995785.448792-UTR-E-fasciculatus_F_contig15249:692..705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15249 693..705 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928006.0222065-CDS-E-fasciculatus_F_contig15249:705..8121622928006.0222065-CDS-E-fasciculatus_F_contig15249:705..812Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15249 706..812 +
1695995785.4580753-CDS-E-fasciculatus_F_contig15249:705..8121695995785.4580753-CDS-E-fasciculatus_F_contig15249:705..812Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15249 706..812 +
1622928006.0929284-CDS-E-fasciculatus_F_contig15249:1782..18581622928006.0929284-CDS-E-fasciculatus_F_contig15249:1782..1858Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15249 1783..1858 +
1695995785.468302-CDS-E-fasciculatus_F_contig15249:1782..18581695995785.468302-CDS-E-fasciculatus_F_contig15249:1782..1858Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15249 1783..1858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15249.3706.1

>prot_E-fasciculatus_F_contig15249.3706.1 ID=prot_E-fasciculatus_F_contig15249.3706.1|Name=mRNA_E-fasciculatus_F_contig15249.3706.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=61bp
MPWLGWLGIGAQKLAGAERETKTGRAGSTRPSQRRGRNPHLQAAALLLPG
ENRCPKRRSA*
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mRNA from alignment at E-fasciculatus_F_contig15249:313..1858+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15249.3706.1 ID=mRNA_E-fasciculatus_F_contig15249.3706.1|Name=mRNA_E-fasciculatus_F_contig15249.3706.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1546bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15249:313..1858+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCTGTTTGCACTTGCCCAAGACCACATCGAAGGGCTAGCGGCGGTGGT
GGCGGCGGCGGCGGTTGAGCTCGGTCAGCACCAAATTCGGACACTGTCGA
GCCGCAGGACCTCCAGTTGTGTTTAGGTGAGAGACAGAAAGGCAGGTTAG
ACACAGAGTGTCGGACAGAGTGAAGCACGTTGTCATTCCAGCCTCCAGTA
CGCTTCATCTCACCTTGAAGACCGCAACACTTTCGTTCGTTTCACGTAAA
AACAGTGTTGCCCTTTTCTCGGTGGTTGCTAAATAATACCAAGACCCCTC
GCCGGATTTACATCTGCAGTTCATTTTCAATTTTGTTGTGTACAACCGTT
TTTTTTCTTTTGTCCGACCACCAACTGCAGAAAAGACTGGCACATGCCAT
GGCTGGGATGGCTGGGTATCGGAGCCCAGAAATTGGCGGGCGCCGAGAGA
GAGACTAAAACCGGCCGAGCAGGCTCAACACGGCCATCGCAGCGCAGAGG
GTGAGGAAATGTAGCGCGTAGTTGTGACGTTTACCGGCTGGCTGGCATCG
CTGGTCCTACAGCGTATGTTTATGACAACGACTGCAAATATGAAGTCCAG
TTTTTCAGCAGATTATTCTGAAAACTCGTTGCTGTGACGACTTCAACACA
TCCCGTCGATTGGGGCTTCCTACTATAATATTTCCGCGTGCACGTTCCAA
TATTTCAAGCGCACTCGCGGTTGTGCGGACTCAACCAGCCGGTCCTATTT
AGATTTTGTGCGCAATTTGAGTTTGGTCGTTTTGTGGGCACAGAACCTTA
CTGCAGGAACCTCTTTTTTTGGCCGTGGCTGGCTTTTTCTGCAATACCTA
CAATATCAAAGGATGCGGGGGAGATTAGGGACCAGGTTTGTCTTGTGCAT
ACTCGTACCATAAGGCTGGAGCTGTGCGTTGATACAGGGAATACTACATG
AAACGTGAAGAAAATGACTGTGGAGAAGAAAGCAGAGGGGGAGGCAAGGT
TTTTGTTCGCATATATTATTATTGTGTGTGCGTTGCTCGGGATTTTCCTC
GACTACCGTCGAAACGGCAGAAGCATTGTTGTGCAAAGGTAGATGTGCTC
TGACAGAGTGTTTGTGCTAAAGTCGTCGAGGATCCGGGTCGGGTCGCGCA
CGAGCCGCCGCCGCATGACATTGGCACGAGGATCAGCCGCGGTGTGCTTG
GGAAATGTTCCAGCTCGAACTATTGAATGGCAACAACACGAGAGGATCCG
CATGCGCTGTTCGAAATCCTCAAGCACAATTTTGTTTTCGTGACACTGGT
CAGAGGTTCAGGTCCGTAGAGAGCTTTCCATGGAAAACACGGGTAGCCTT
GATTGGGAGCAACGGCAGCAGGCTACAAAACGCTTGAAGTTTTGTTCTTT
TATGTTTGGTATCGAACAACAACGTGAAGTTTGTCGACCCCCCCACGTCA
ACTCTTGTCTCTACCGGCAGGCGAAATCCGCATCTTCAAGCGGCAGCGCT
TCTACTGCCTGGCGAAAACCGGTGTCCAAAAAGGAGGAGCGCTTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15249:313..1858+

>mRNA_E-fasciculatus_F_contig15249.3706.1 ID=mRNA_E-fasciculatus_F_contig15249.3706.1|Name=mRNA_E-fasciculatus_F_contig15249.3706.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=366bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15249:313..1858+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCATGGCTGGGATGGCTGGGTATCGGAGCCCAGAAATTGGCGGGCGC
CGAGAGAGAGACTAAAACCGGCCGAGCAGGCTCAACACGGCCATCGCAGC
GCAGAGGATGCCATGGCTGGGATGGCTGGGTATCGGAGCCCAGAAATTGG
CGGGCGCCGAGAGAGAGACTAAAACCGGCCGAGCAGGCTCAACACGGCCA
TCGCAGCGCAGAGGGCGAAATCCGCATCTTCAAGCGGCAGCGCTTCTACT
GCCTGGCGAAAACCGGTGTCCAAAAAGGAGGAGCGCTTAGGCGAAATCCG
CATCTTCAAGCGGCAGCGCTTCTACTGCCTGGCGAAAACCGGTGTCCAAA
AAGGAGGAGCGCTTAG
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