mRNA_E-fasciculatus_F_contig15247.3705.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15247.3705.1
Unique NamemRNA_E-fasciculatus_F_contig15247.3705.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15247.3705.1 vs. uniprot
Match: D7G9C4_ECTSI (MIP family channel protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9C4_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 1.920e-49
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = 1
Query:   25 MMIVISVGNGAIANEVLKKTKGHALGLGFVAIAFGMAFFLAISMFGHISANVNPAMLLAKAFLGRLAWKDALALSVANVLGGFLGGVVVYGL 300
            M IVI+VGNGAIANEVLKKTKGHALGLGFVAIAFGMAFFLAISMFGHISANVNPAML+AKAFLGRLAWKDALALSVAN+LGGFLGGVVVYGL
Sbjct:    1 MAIVIAVGNGAIANEVLKKTKGHALGLGFVAIAFGMAFFLAISMFGHISANVNPAMLVAKAFLGRLAWKDALALSVANILGGFLGGVVVYGL 92          
BLAST of mRNA_E-fasciculatus_F_contig15247.3705.1 vs. uniprot
Match: A0A1S8VP22_9FUNG (Aquaporin n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VP22_9FUNG)

HSP 1 Score: 99.4 bits (246), Expect = 3.030e-22
Identity = 49/98 (50.00%), Postives = 70/98 (71.43%), Query Frame = 1
Query:    1 RFISETLGMMIVISVGNGAIANEVLKKTKGHALGLGFVAIAFGMAFFLAISMFGHISANVNPAMLLAKAFLGRLAWKDALALSVANVLGGFLGGVVVY 294
            R ++E LG  + I +G   IANE+L  TKGH++G G+VA +FGM+F +AI MFG  SA++NP+M LA   +GRL++ D LALS A + GGF+G V ++
Sbjct:   12 RCLTEFLGTTLAIFLGTSVIANELLPLTKGHSMGFGWVATSFGMSFGVAIMMFGFASAHLNPSMTLALFIIGRLSFTDFLALSCAQLAGGFVGAVAMF 109          
BLAST of mRNA_E-fasciculatus_F_contig15247.3705.1 vs. uniprot
Match: F4NWJ9_BATDJ (Aquaporin n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NWJ9_BATDJ)

HSP 1 Score: 95.9 bits (237), Expect = 5.410e-21
Identity = 45/98 (45.92%), Postives = 69/98 (70.41%), Query Frame = 1
Query:    1 RFISETLGMMIVISVGNGAIANEVLKKTKGHALGLGFVAIAFGMAFFLAISMFGHISANVNPAMLLAKAFLGRLAWKDALALSVANVLGGFLGGVVVY 294
            R ++E LG  + I +G+  IANE+L  TKGH++G G++A AFGMAF L+I MFG+ SA+VNPAM L    + +L++ D + L ++ + GGF+G V ++
Sbjct:   12 RCLTEFLGTALAIFLGDSVIANELLPLTKGHSMGFGWIATAFGMAFTLSILMFGYASAHVNPAMTLTLFIINKLSFVDCICLILSQLAGGFMGAVAMF 109          
BLAST of mRNA_E-fasciculatus_F_contig15247.3705.1 vs. uniprot
Match: A0A836C7L0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7L0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.310e-20
Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 RFISETLGMMIVISVGNGAIANEVLKKTKGHALGLGFVAIAFGMAFFLAISMFGHISANVNPAMLLAK 204
            +FI+E L M + I++GNG  ANEVL +TKG+++G+GFVAIA+G+AFF+A +MFGHIS   NPA + A+
Sbjct:    8 KFIAELLSMTVYIAIGNGCTANEVLPRTKGNSMGMGFVAIAYGLAFFIATAMFGHISTVPNPAFVFAQ 75          
BLAST of mRNA_E-fasciculatus_F_contig15247.3705.1 vs. uniprot
Match: A0A1C4GZU5_9BIFI (Glycerol uptake facilitator protein n=1 Tax=Bifidobacterium commune TaxID=1505727 RepID=A0A1C4GZU5_9BIFI)

HSP 1 Score: 87.4 bits (215), Expect = 6.040e-19
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = 1
Query:    1 RFISETLGMMIVISVGNGAIANEVLKKTKGHALGLGFVAIAFGMAFFLAISMFGHIS-ANVNPAMLLAKAFLGRLAWKDALALSVANVLGGFLGGVVVY 294
            +  +E LG MI++ +GNG++AN  LK TKGHA G   +A+ +GM   + + MFG +S +++NPAM LA+AF G   W   L   VA +LG F+G ++V+
Sbjct:    8 KLAAEFLGTMILLILGNGSVANTDLKGTKGHASGWLNIALGYGMGVMVPVMMFGGVSGSHINPAMTLAQAFTGLFPWSQVLPYIVAQLLGAFVGQLIVF 106          
BLAST of mRNA_E-fasciculatus_F_contig15247.3705.1 vs. uniprot
Match: A0A087SQB7_AUXPR (Putative glycerol uptake facilitator protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SQB7_AUXPR)

HSP 1 Score: 87.8 bits (216), Expect = 3.420e-18
Identity = 43/95 (45.26%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   10 SETLGMMIVISVGNGAIANEVLKKTKGHALGLGFVAIAFGMAFFLAISMFGHISANVNPAMLLAKAFLGRLAWKDALALSVANVLGGFLGGVVVY 294
            +E +G M+ + +G+ A+ANE+L KTKG+  G GF+AI FG+AF     MFGHISA +NPA  L +   G L+  + LALS + + G FLG ++++
Sbjct:   20 AEVIGTMLALFLGDAAVANELLAKTKGNGYGWGFLAIGFGLAFGFPTMMFGHISAFLNPAACLFQWVAGNLSVTEFLALSFSELAGAFLGAILLW 114          
BLAST of mRNA_E-fasciculatus_F_contig15247.3705.1 vs. uniprot
Match: A0A250WPL5_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WPL5_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 7.910e-18
Identity = 39/98 (39.80%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    1 RFISETLGMMIVISVGNGAIANEVLKKTKGHALGLGFVAIAFGMAFFLAISMFGHISANVNPAMLLAKAFLGRLAWKDALALSVANVLGGFLGGVVVY 294
            + ++E LG MI I +G   IA+ +L K+KG ++G G++++ +G+AFF+    FGH+SAN+NPA+ +A   +G+  + + LALS + ++G FLG V  +
Sbjct:   62 KCLTELLGTMIGIYLGCSVIASAILPKSKGQSMGFGWISLGYGLAFFVPGVFFGHVSANLNPAICIADLVMGKSTFLEFLALSASEIVGAFLGAVCTW 159          
BLAST of mRNA_E-fasciculatus_F_contig15247.3705.1 vs. uniprot
Match: A0A0L0FCN1_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FCN1_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 2.450e-17
Identity = 42/95 (44.21%), Postives = 62/95 (65.26%), Query Frame = 1
Query:   10 SETLGMMIVISVGNGAIANEVLKKTKGHALGLGFVAIAFGMAFFLAISMFGHISANVNPAMLLAKAFLGRLAWKDALALSVANVLGGFLGGVVVY 294
            SE + MM+ I +G   +A E+L K+KG  +G+  VAI FG+AF++ I MFGHISA +NP M+ AK   G+   +  L LS+A+ +G F G  +V+
Sbjct:   11 SEGIAMMVAIWLGESLLACELLAKSKGAHMGITGVAIGFGIAFYIPIQMFGHISATLNPCMMFAKWICGKKTTEAWLLLSLADFIGAFCGACIVW 105          
BLAST of mRNA_E-fasciculatus_F_contig15247.3705.1 vs. uniprot
Match: M1H9L8_9PHYC (Glycerol uptake facilitator protein n=1 Tax=Acanthocystis turfacea Chlorella virus MN0810.1 TaxID=1278272 RepID=M1H9L8_9PHYC)

HSP 1 Score: 83.2 bits (204), Expect = 3.830e-17
Identity = 41/98 (41.84%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 RFISETLGMMIVISVGNGAIANEVLKKTKGHALGLGFVAIAFGMAFFLAISMFGHISANVNPAMLLAKAFLGRLAWKDALALSVANVLGGFLGGVVVY 294
            +F +E     + + +G   +AN+ L  TKGH +G GF+A  FGMAF + I +FG +SA++NPAM +A   LG++  K+AL      +LG FLG ++VY
Sbjct:    8 KFGTEACSSFLAMLLGLSVVANDHLLLTKGHKIGFGFIAFGFGMAFAMPIIIFGFVSAHLNPAMCVALLVLGKVDAKEALVSIGGELLGMFLGAIMVY 105          
BLAST of mRNA_E-fasciculatus_F_contig15247.3705.1 vs. uniprot
Match: M1GXH3_9PHYC (Glycerol uptake facilitator protein n=1 Tax=Acanthocystis turfacea Chlorella virus Canal-1 TaxID=1278270 RepID=M1GXH3_9PHYC)

HSP 1 Score: 83.6 bits (205), Expect = 6.390e-17
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 RFISETLGMMIVISVGNGAIANEVLKKTKGHALGLGFVAIAFGMAFFLAISMFGHISANVNPAMLLAKAFLGRLAWKDALALSVANVLGGFLGGVVVY 294
            +F +E     + +  G   +AN+ L KTKGH +G GF+A  FGMAF + + +FG +SA++NPAM +A   LG++  K+A       ++G FLG V+VY
Sbjct:   82 KFGTEACSSFLAMLFGLSIVANDHLLKTKGHKIGFGFIAFGFGMAFAIPLVIFGFVSAHLNPAMCIALLLLGKVDAKEAFVSIGGEIIGMFLGAVMVY 179          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15247.3705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9C4_ECTSI1.920e-4995.65MIP family channel protein n=2 Tax=Ectocarpus TaxI... [more]
A0A1S8VP22_9FUNG3.030e-2250.00Aquaporin n=1 Tax=Batrachochytrium salamandrivoran... [more]
F4NWJ9_BATDJ5.410e-2145.92Aquaporin n=2 Tax=Batrachochytrium dendrobatidis T... [more]
A0A836C7L0_9STRA3.310e-2057.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1C4GZU5_9BIFI6.040e-1943.43Glycerol uptake facilitator protein n=1 Tax=Bifido... [more]
A0A087SQB7_AUXPR3.420e-1845.26Putative glycerol uptake facilitator protein n=3 T... [more]
A0A250WPL5_9CHLO7.910e-1839.80Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A0L0FCN1_9EUKA2.450e-1744.21Uncharacterized protein (Fragment) n=1 Tax=Sphaero... [more]
M1H9L8_9PHYC3.830e-1741.84Glycerol uptake facilitator protein n=1 Tax=Acanth... [more]
M1GXH3_9PHYC6.390e-1740.82Glycerol uptake facilitator protein n=1 Tax=Acanth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15247contigE-fasciculatus_F_contig15247:386..960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue1.5e-40
Seed eggNOG ortholog2880.D7G9C4
EggNOG free text desc.Major intrinsic protein
EggNOG OGs2DTS9@1,2S6IG@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons2
Model size303
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15247.3705.1prot_E-fasciculatus_F_contig15247.3705.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15247 410..960 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928005.90384-UTR-E-fasciculatus_F_contig15247:385..4091622928005.90384-UTR-E-fasciculatus_F_contig15247:385..409Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15247 386..409 +
1695995785.4052317-UTR-E-fasciculatus_F_contig15247:385..4091695995785.4052317-UTR-E-fasciculatus_F_contig15247:385..409Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15247 386..409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928005.938818-CDS-E-fasciculatus_F_contig15247:409..5621622928005.938818-CDS-E-fasciculatus_F_contig15247:409..562Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15247 410..562 +
1695995785.4153082-CDS-E-fasciculatus_F_contig15247:409..5621695995785.4153082-CDS-E-fasciculatus_F_contig15247:409..562Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15247 410..562 +
1622928005.9520292-CDS-E-fasciculatus_F_contig15247:834..9601622928005.9520292-CDS-E-fasciculatus_F_contig15247:834..960Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15247 835..960 +
1695995785.4242191-CDS-E-fasciculatus_F_contig15247:834..9601695995785.4242191-CDS-E-fasciculatus_F_contig15247:834..960Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15247 835..960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15247.3705.1

>prot_E-fasciculatus_F_contig15247.3705.1 ID=prot_E-fasciculatus_F_contig15247.3705.1|Name=mRNA_E-fasciculatus_F_contig15247.3705.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=93bp
MMIVISVGNGAIANEVLKKTKGHALGLGFVAIAFGMAFFLAISMFGHISA
NVNPAMLLAKAFLGRLAWKDALALSVANVLGGFLGGVVVYGL*
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mRNA from alignment at E-fasciculatus_F_contig15247:386..960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15247.3705.1 ID=mRNA_E-fasciculatus_F_contig15247.3705.1|Name=mRNA_E-fasciculatus_F_contig15247.3705.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=575bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15247:386..960+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTTCATTTCGGAGACGCTTGGCATGATGATTGTCATCTCCGTCGGCAA CGGAGCGATCGCCAACGAAGTGCTCAAGAAGACGAAGGGCCATGCTTTGG GGCTGGGATTTGTCGCGATTGCGTTTGGCATGGCCTTCTTCCTGGCTATC TCCATGTTTGGCCACATCAGTGCCAATGTAATTAATCCCTTGCTTATCGT CTAACCTCAGGGTCGCCCAGAAATGTCGATGTTCTGCGTTTCGAGCTGCA AGGAAGTACTTTCACACAATAGATCAAATTGGGATGTTTGTCACAACTGC GTTCAATCCCTTGCAGAGGAAAGGCGCCCCTCCCTCGTGGCACTCTTCGA AAATGAGCCACACGATCACGGTCAGTCTTGGCGCCCCCCTCCAGTTCGTT CGTTAATATCTGTAGCCCTGGGTGGACGGCCGGTGCCATGGTGCCGCAGG TGAATCCCGCCATGCTCCTCGCCAAGGCGTTCCTGGGCCGATTGGCATGG AAGGACGCTCTGGCACTGTCGGTTGCGAACGTTCTCGGGGGATTCCTAGG CGGTGTCGTCGTCTACGGTCTATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15247:386..960+

>mRNA_E-fasciculatus_F_contig15247.3705.1 ID=mRNA_E-fasciculatus_F_contig15247.3705.1|Name=mRNA_E-fasciculatus_F_contig15247.3705.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=558bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15247:386..960+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGATTGTCATCTCCGTCGGCAACGGAGCGATCGCCAACGAAGTGCT
CAAGAAGACGAAGGGCCATGCTTTGGGGCTGGGATTTGTCGCGATTGCGT
TTGGCATGGCCTTCTTCCTGGCTATCTCCATGTTTGGCCACATCAGTGCC
AATATGATGATTGTCATCTCCGTCGGCAACGGAGCGATCGCCAACGAAGT
GCTCAAGAAGACGAAGGGCCATGCTTTGGGGCTGGGATTTGTCGCGATTG
CGTTTGGCATGGCCTTCTTCCTGGCTATCTCCATGTTTGGCCACATCAGT
GCCAATGTGAATCCCGCCATGCTCCTCGCCAAGGCGTTCCTGGGCCGATT
GGCATGGAAGGACGCTCTGGCACTGTCGGTTGCGAACGTTCTCGGGGGAT
TCCTAGGCGGTGTCGTCGTCTACGGTCTATAGGTGAATCCCGCCATGCTC
CTCGCCAAGGCGTTCCTGGGCCGATTGGCATGGAAGGACGCTCTGGCACT
GTCGGTTGCGAACGTTCTCGGGGGATTCCTAGGCGGTGTCGTCGTCTACG
GTCTATAG
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