mRNA_E-fasciculatus_F_contig15245.3704.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15245.3704.1
Unique NamemRNA_E-fasciculatus_F_contig15245.3704.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15245.3704.1 vs. uniprot
Match: A0A6H5JX93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX93_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 2.100e-44
Identity = 86/105 (81.90%), Postives = 90/105 (85.71%), Query Frame = -1 
Query:  527 MATSGDGARRFMHALAAMLLVACSFPCTAGDGSSAAAVQLKAQALREAVEGNG----APQPVVVAPERDSPGSLLERGTALLYEGNSKGAVAALDAAIAGWEEEV 829
            MAT+GDGARRFMHALAAMLLVACSFPC  GDGSSAAAV  KA+ALR+AVE N     A  PVVV PERDSPGSLLERGTALLYEGNSK AVAALDAAI GWEEE+
Sbjct:    1 MATTGDGARRFMHALAAMLLVACSFPCAVGDGSSAAAVLQKAKALRDAVEDNNRAPPAAHPVVVVPERDSPGSLLERGTALLYEGNSKDAVAALDAAITGWEEEM 105
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BLAST of mRNA_E-fasciculatus_F_contig15245.3704.1 vs. uniprot
Match: D7G862_ECTSI (Pc13g00620 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G862_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 5.850e-42
Identity = 86/105 (81.90%), Postives = 92/105 (87.62%), Query Frame = -1 
Query:  527 MATSGDGARRFMHALAAMLLVACSFPCTAGDGSSAAAVQLKAQALREAVEGNG----APQPVVVAPERDSPGSLLERGTALLYEGNSKGAVAALDAAIAGWEEEV 829
            MAT+GDGARRFMHALAAMLLVACSFPC  GDGSSAAAVQ KA+ALR+AVEGN     A +PVVVAPERDSPGSLL+RGTALLY G SK AVAALDAAI GWEEE+
Sbjct:    1 MATTGDGARRFMHALAAMLLVACSFPCAVGDGSSAAAVQQKAKALRDAVEGNNRAPPAAEPVVVAPERDSPGSLLDRGTALLYAGKSKDAVAALDAAITGWEEEM 105
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15245.3704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JX93_9PHAE2.100e-4481.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G862_ECTSI5.850e-4281.90Pc13g00620 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15245contigE-fasciculatus_F_contig15245:2..872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size871
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15245.3704.1prot_E-fasciculatus_F_contig15245.3704.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15245 305..799 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928005.8215673-UTR-E-fasciculatus_F_contig15245:1..3041622928005.8215673-UTR-E-fasciculatus_F_contig15245:1..304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15245 2..304 +
1695995785.3778489-UTR-E-fasciculatus_F_contig15245:1..3041695995785.3778489-UTR-E-fasciculatus_F_contig15245:1..304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15245 2..304 +
1622928005.8593328-UTR-E-fasciculatus_F_contig15245:799..8721622928005.8593328-UTR-E-fasciculatus_F_contig15245:799..872Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15245 800..872 +
1695995785.3954465-UTR-E-fasciculatus_F_contig15245:799..8721695995785.3954465-UTR-E-fasciculatus_F_contig15245:799..872Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15245 800..872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928005.8416848-CDS-E-fasciculatus_F_contig15245:304..7991622928005.8416848-CDS-E-fasciculatus_F_contig15245:304..799Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15245 305..799 +
1695995785.3867126-CDS-E-fasciculatus_F_contig15245:304..7991695995785.3867126-CDS-E-fasciculatus_F_contig15245:304..799Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15245 305..799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15245.3704.1

>prot_E-fasciculatus_F_contig15245.3704.1 ID=prot_E-fasciculatus_F_contig15245.3704.1|Name=mRNA_E-fasciculatus_F_contig15245.3704.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=165bp
MPESVGRGGLLHLSGFARNIAYKWLNVCATPQSATGNHGPWSQDAKTARQ
QDSSAECGTTAYQKKSNRISTCCMVPPPPTQRSPHPRQPQHPWSFLHTAA
QYRAPRATLGYPVPELQQQVEALRSLPRLHEEPGLSAALPQRWNRPPRCR
ERSTPREASPPGRA*
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mRNA from alignment at E-fasciculatus_F_contig15245:2..872+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15245.3704.1 ID=mRNA_E-fasciculatus_F_contig15245.3704.1|Name=mRNA_E-fasciculatus_F_contig15245.3704.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=871bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15245:2..872+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGGGGGGGGGCAAGGCCGAGACTCGAGCTCTCAGCCTGACCACTAAA
ACGAGCTTCAGGGTACCTTCAGGGTACCTTCAGGGTACCTTCAGGGTACC
AACGGTAGACCAGCGGGGCGACCTGTGAACAAATCGCCCACAACGCGCGC
GAACCATGAACTATGGGTCTCGCTGGGTGAACCCATGCCCAGGGGACCTC
TTCTGAATCGTATTGCGAAAGTGTAGCTACAACCGCGTGGTTGCATAATC
CGCAGCTGGGAGGCGTGGGGGCTGGAGGAAAACTTTTATCGGTGTGACAT
TAAATGCCTGAGTCAGTCGGTAGGGGAGGGCTGTTACATTTGTCTGGTTT
TGCACGCAACATCGCTTACAAGTGGTTAAATGTGTGTGCTACGCCGCAAA
GCGCAACAGGCAATCATGGACCATGGAGCCAAGACGCCAAGACAGCAAGA
CAGCAAGACAGCAGTGCGGAATGCGGAACAACTGCGTACCAAAAAAAATC
CAACCGCATTTCTACGTGCTGTATGGTACCTCCTCCTCCCACCCAGCGAT
CGCCGCATCCAAGGCAGCCACAGCACCCTTGGAGTTTCCTTCATACAGCA
GCGCAGTACCGCGCTCCAAGAGCGACCCTGGGCTATCCCGTTCCGGAGCT
ACAACAACAGGTTGAGGCGCTCCGTTCCCTTCCACGGCTTCACGAAGAGC
CTGGGCTTTCAGCTGCACTGCCGCAGCGCTGGAACCGTCCCCCGCGGTGC
AGGGAAAGGAGCACGCCACGAGAAGCATCGCCGCCAGGGCGTGCATGAAC
CGGCGAGCTCCATCGCCAGACGTGGCCATGCTCCTGATGAGCCTGCGATG
TCTGACTGCTGTGCTGCGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15245:2..872+

>mRNA_E-fasciculatus_F_contig15245.3704.1 ID=mRNA_E-fasciculatus_F_contig15245.3704.1|Name=mRNA_E-fasciculatus_F_contig15245.3704.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=990bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15245:2..872+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCTGAGTCAGTCGGTAGGGGAGGGCTGTTACATTTGTCTGGTTTTGC
ACGCAACATCGCTTACAAGTGGTTAAATGTGTGTGCTACGCCGCAAAGCG
CAACAGGCAATCATGGACCATGGAGCCAAGACGCCAAGACAGCAAGACAG
CAAGACAGCAGTGCGGAATGCGGAACAACTGCGTACCAAAAAAAATCCAA
CCGCATTTCTACGTGCTGTATGGTACCTCCTCCTCCCACCCAGCGATCGC
CGCATCCAAGGCAGCCACAGCACCCTTGGAGTTTCCTTCATACAGCAGCG
CAGTACCGCGCTCCAAGAGCGACCCTGGGCTATCCCGTTCCGGAGCTACA
ACAACAGGTTGAGGCGCTCCGTTCCCTTCCACGGCTTCACGAAGAGCCTG
GGCTTTCAGCTGCACTGCCGCAGCGCTGGAACCGTCCCCCGCGGTGCAGG
GAAAGGAGCACGCCACGAGAAGCATCGCCGCCAGGGCGTGCATGAATGCC
TGAGTCAGTCGGTAGGGGAGGGCTGTTACATTTGTCTGGTTTTGCACGCA
ACATCGCTTACAAGTGGTTAAATGTGTGTGCTACGCCGCAAAGCGCAACA
GGCAATCATGGACCATGGAGCCAAGACGCCAAGACAGCAAGACAGCAAGA
CAGCAGTGCGGAATGCGGAACAACTGCGTACCAAAAAAAATCCAACCGCA
TTTCTACGTGCTGTATGGTACCTCCTCCTCCCACCCAGCGATCGCCGCAT
CCAAGGCAGCCACAGCACCCTTGGAGTTTCCTTCATACAGCAGCGCAGTA
CCGCGCTCCAAGAGCGACCCTGGGCTATCCCGTTCCGGAGCTACAACAAC
AGGTTGAGGCGCTCCGTTCCCTTCCACGGCTTCACGAAGAGCCTGGGCTT
TCAGCTGCACTGCCGCAGCGCTGGAACCGTCCCCCGCGGTGCAGGGAAAG
GAGCACGCCACGAGAAGCATCGCCGCCAGGGCGTGCATGA
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