mRNA_E-fasciculatus_F_contig15243.3703.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15243.3703.1
Unique NamemRNA_E-fasciculatus_F_contig15243.3703.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15243.3703.1 vs. uniprot
Match: D7FNR5_ECTSI (Serine/threonine protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR5_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 1.720e-62
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 VAAIVEDKILCMHGGISPELQRLGQILEIPRPIDVPDEGLLCDLLWSDPEAGICGWGRNPRGVSYTFGHDVIEEFLTRHDLDLICRAHQV 270
            VAAIVEDKILCMHGGISPELQRLGQILEIPRPIDVPDEGLLCDLLWSDPEAGICGWGRNPRGVSYTFGHDVIEEFLTRHDLDLICRAHQV
Sbjct:   20 VAAIVEDKILCMHGGISPELQRLGQILEIPRPIDVPDEGLLCDLLWSDPEAGICGWGRNPRGVSYTFGHDVIEEFLTRHDLDLICRAHQV 109
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BLAST of mRNA_E-fasciculatus_F_contig15243.3703.1 vs. uniprot
Match: A0A6H5L9U4_9PHAE (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9U4_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 2.090e-60
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 VAAIVEDKILCMHGGISPELQRLGQILEIPRPIDVPDEGLLCDLLWSDPEAGICGWGRNPRGVSYTFGHDVIEEFLTRHDLDLICRAHQV 270
            VAAIVEDKILCMHGGISPELQRLGQILEIPRPIDVPDEGLLCDLLWSDPEAGICGWGRNPRGVSYTFGHDVIEEFLTRHDLDLICRAHQV
Sbjct:  178 VAAIVEDKILCMHGGISPELQRLGQILEIPRPIDVPDEGLLCDLLWSDPEAGICGWGRNPRGVSYTFGHDVIEEFLTRHDLDLICRAHQV 267
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BLAST of mRNA_E-fasciculatus_F_contig15243.3703.1 vs. uniprot
Match: A0A835Z5Q1_9STRA (Serine/threonine-protein phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Q1_9STRA)

HSP 1 Score: 187 bits (474), Expect = 3.510e-57
Identity = 84/90 (93.33%), Postives = 87/90 (96.67%), Query Frame = 1 
Query:    1 VAAIVEDKILCMHGGISPELQRLGQILEIPRPIDVPDEGLLCDLLWSDPEAGICGWGRNPRGVSYTFGHDVIEEFLTRHDLDLICRAHQV 270
            VAA+VEDKILCMHGGISPELQRLGQ+LEIPRPIDVPDEGLLCDLLWSDPE  ICGWGRNPRGVSYTFGHDVIEEFL +HDLDLICRAHQV
Sbjct:  166 VAAVVEDKILCMHGGISPELQRLGQVLEIPRPIDVPDEGLLCDLLWSDPEPNICGWGRNPRGVSYTFGHDVIEEFLQKHDLDLICRAHQV 255
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BLAST of mRNA_E-fasciculatus_F_contig15243.3703.1 vs. uniprot
Match: I2CQR7_NANGC (Serine/threonine-protein phosphatase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQR7_NANGC)

HSP 1 Score: 163 bits (412), Expect = 1.010e-46
Identity = 70/90 (77.78%), Postives = 79/90 (87.78%), Query Frame = 1 
Query:    1 VAAIVEDKILCMHGGISPELQRLGQILEIPRPIDVPDEGLLCDLLWSDPEAGICGWGRNPRGVSYTFGHDVIEEFLTRHDLDLICRAHQV 270
            VAA++EDKI+CMHGG+SPEL  L QIL +PRP+DVPDEG+LCDLLWSDP+A   GW RNPRGVSY FGHDVIE+FL  HDLDLICRAHQV
Sbjct:  279 VAAVIEDKIMCMHGGLSPELHHLSQILSLPRPVDVPDEGILCDLLWSDPDASAEGWSRNPRGVSYLFGHDVIEDFLAEHDLDLICRAHQV 368
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BLAST of mRNA_E-fasciculatus_F_contig15243.3703.1 vs. uniprot
Match: A0A7S3H853_9STRA (Serine/threonine-protein phosphatase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H853_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.530e-46
Identity = 67/90 (74.44%), Postives = 77/90 (85.56%), Query Frame = 1 
Query:    1 VAAIVEDKILCMHGGISPELQRLGQILEIPRPIDVPDEGLLCDLLWSDPEAGICGWGRNPRGVSYTFGHDVIEEFLTRHDLDLICRAHQV 270
            VAA+VEDKILCMHGG+SP+L  L Q+ +IPRP DVPDEGLLCDLLW+DP+  + GWG N RGVSYTFGHD+I +FL RH LDLICRAHQV
Sbjct:   85 VAAVVEDKILCMHGGLSPDLDHLSQVFDIPRPTDVPDEGLLCDLLWADPDQNVMGWGYNARGVSYTFGHDIISDFLARHGLDLICRAHQV 174
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BLAST of mRNA_E-fasciculatus_F_contig15243.3703.1 vs. uniprot
Match: A0A7S2V6S9_9STRA (Serine/threonine-protein phosphatase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6S9_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.660e-45
Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:    1 VAAIVEDKILCMHGGISPELQRLGQILEIPRPIDVPDEGLLCDLLWSDPEAGICGWGRNPRGVSYTFGHDVIEEFLTRHDLDLICRAHQV 270
            V AIVEDKI C HGG+SPEL+RL Q+++IPRP DVPD+GLLCDLLWSDP+  ICGW  N RGVSYTFGHDVIE+FL RHDLDLI RAHQV
Sbjct:  198 VVAIVEDKIFCSHGGLSPELERLVQVMDIPRPTDVPDQGLLCDLLWSDPDPYICGWSTNARGVSYTFGHDVIEDFLQRHDLDLIARAHQV 287
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BLAST of mRNA_E-fasciculatus_F_contig15243.3703.1 vs. uniprot
Match: A0A7S0E302_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E302_9EUKA)

HSP 1 Score: 146 bits (369), Expect = 7.230e-44
Identity = 63/89 (70.79%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    4 AAIVEDKILCMHGGISPELQRLGQILEIPRPIDVPDEGLLCDLLWSDPEAGICGWGRNPRGVSYTFGHDVIEEFLTRHDLDLICRAHQV 270
            AA+V++KILCMHGG+SP+LQ+L QI  I RP DVPD+GLLCDLLWSDP+  + GWG N RGVSYTFG DV+ +FL +HDLDL+CRAHQV
Sbjct:    1 AAVVDEKILCMHGGLSPDLQQLSQIQRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSYTFGADVVAKFLDKHDLDLVCRAHQV 89
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BLAST of mRNA_E-fasciculatus_F_contig15243.3703.1 vs. uniprot
Match: A0A8N4ICV5_ELAGV (serine/threonine-protein phosphatase PP1 isoform X2 n=1 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A8N4ICV5_ELAGV)

HSP 1 Score: 150 bits (380), Expect = 2.080e-43
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:    1 VAAIVEDKILCMHGGISPELQRLGQILEIPRPIDVPDEGLLCDLLWSDPEAGICGWGRNPRGVSYTFGHDVIEEFLTRHDLDLICRAHQV 270
            VAA+++DKI CMHGG+SPELQ L QI +I RP+DVPD+GLLCDLLWSDP+  I GWG N RGVSYTFG D + EFL +HDLDLICRAHQV
Sbjct:  134 VAAVIDDKIFCMHGGLSPELQHLDQIRQIERPVDVPDQGLLCDLLWSDPDGEIKGWGENDRGVSYTFGVDKVSEFLKKHDLDLICRAHQV 223
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BLAST of mRNA_E-fasciculatus_F_contig15243.3703.1 vs. uniprot
Match: A0A6I9R0A8_ELAGV (Serine/threonine-protein phosphatase n=5 Tax=commelinids TaxID=4734 RepID=A0A6I9R0A8_ELAGV)

HSP 1 Score: 150 bits (380), Expect = 3.890e-43
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:    1 VAAIVEDKILCMHGGISPELQRLGQILEIPRPIDVPDEGLLCDLLWSDPEAGICGWGRNPRGVSYTFGHDVIEEFLTRHDLDLICRAHQV 270
            VAA+++DKI CMHGG+SPELQ L QI +I RP+DVPD+GLLCDLLWSDP+  I GWG N RGVSYTFG D + EFL +HDLDLICRAHQV
Sbjct:  159 VAAVIDDKIFCMHGGLSPELQHLDQIRQIERPVDVPDQGLLCDLLWSDPDGEIKGWGENDRGVSYTFGVDKVSEFLKKHDLDLICRAHQV 248
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BLAST of mRNA_E-fasciculatus_F_contig15243.3703.1 vs. uniprot
Match: A0A4S8KHJ4_MUSBA (Serine/threonine-protein phosphatase n=3 Tax=Musaceae TaxID=4637 RepID=A0A4S8KHJ4_MUSBA)

HSP 1 Score: 150 bits (378), Expect = 4.840e-43
Identity = 67/90 (74.44%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:    1 VAAIVEDKILCMHGGISPELQRLGQILEIPRPIDVPDEGLLCDLLWSDPEAGICGWGRNPRGVSYTFGHDVIEEFLTRHDLDLICRAHQV 270
            VAA+V+DKILCMHGG+SPEL+ L QI  I RP+D+PD+GLLCDLLWSDP+  I GWG N RGVSYTFG D + EFL RHDLDLICRAHQV
Sbjct:  160 VAALVDDKILCMHGGLSPELKSLDQIRNIARPVDIPDQGLLCDLLWSDPDKDIEGWGENDRGVSYTFGPDKVAEFLQRHDLDLICRAHQV 249
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15243.3703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNR5_ECTSI1.720e-62100.00Serine/threonine protein phosphatase n=1 Tax=Ectoc... [more]
A0A6H5L9U4_9PHAE2.090e-60100.00Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
A0A835Z5Q1_9STRA3.510e-5793.33Serine/threonine-protein phosphatase n=1 Tax=Tribo... [more]
I2CQR7_NANGC1.010e-4677.78Serine/threonine-protein phosphatase (Fragment) n=... [more]
A0A7S3H853_9STRA1.530e-4674.44Serine/threonine-protein phosphatase n=1 Tax=Spume... [more]
A0A7S2V6S9_9STRA1.660e-4577.78Serine/threonine-protein phosphatase n=1 Tax=Fibro... [more]
A0A7S0E302_9EUKA7.230e-4470.79Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A8N4ICV5_ELAGV2.080e-4373.33serine/threonine-protein phosphatase PP1 isoform X... [more]
A0A6I9R0A8_ELAGV3.890e-4373.33Serine/threonine-protein phosphatase n=5 Tax=comme... [more]
A0A4S8KHJ4_MUSBA4.840e-4374.44Serine/threonine-protein phosphatase n=3 Tax=Musac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15243contigE-fasciculatus_F_contig15243:2166..2919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.1
Seed ortholog evalue8.6e-49
Seed eggNOG ortholog2880.D7FNR5
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG0639@1,KOG0374@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928005.758858-CDS-E-fasciculatus_F_contig15243:2165..23291622928005.758858-CDS-E-fasciculatus_F_contig15243:2165..2329Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15243 2166..2329 +
1695995785.3577898-CDS-E-fasciculatus_F_contig15243:2165..23291695995785.3577898-CDS-E-fasciculatus_F_contig15243:2165..2329Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15243 2166..2329 +
1622928005.7703128-CDS-E-fasciculatus_F_contig15243:2813..29191622928005.7703128-CDS-E-fasciculatus_F_contig15243:2813..2919Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15243 2814..2919 +
1695995785.368738-CDS-E-fasciculatus_F_contig15243:2813..29191695995785.368738-CDS-E-fasciculatus_F_contig15243:2813..2919Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15243 2814..2919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15243.3703.1prot_E-fasciculatus_F_contig15243.3703.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15243 2166..2919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15243.3703.1

>prot_E-fasciculatus_F_contig15243.3703.1 ID=prot_E-fasciculatus_F_contig15243.3703.1|Name=mRNA_E-fasciculatus_F_contig15243.3703.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=90bp
VAAIVEDKILCMHGGISPELQRLGQILEIPRPIDVPDEGLLCDLLWSDPE
AGICGWGRNPRGVSYTFGHDVIEEFLTRHDLDLICRAHQV
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mRNA from alignment at E-fasciculatus_F_contig15243:2166..2919+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15243.3703.1 ID=mRNA_E-fasciculatus_F_contig15243.3703.1|Name=mRNA_E-fasciculatus_F_contig15243.3703.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=754bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15243:2166..2919+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGCAGCAATCGTGGAGGACAAGATTCTTTGCATGCACGGCGGCATCAG
CCCGGAGCTGCAGCGTCTGGGACAGATCTTGGAGATACCCCGGCCCATCG
ACGTCCCCGACGAAGGCTTGCTTTGCGACTTGCTCTGGTCGGATCCCGAG
GCCGGGATTTGCGGGTAAGGAAGGCAGTGTCCGGTACATTATCCATCCTT
GAACATCTTTTTCTTTGAGTTTTTCTCTTTTTTCGTTTTCGTCTATGATA
TGGGACAGATCTTGGAGATACCCCGGCCCATGGATGTCCCCGGTATCTTA
GATCCTTGGGGATCGTTTTGTTGAGTTGTCTCTCTCTTTTTTCGTGATAT
GCGTACTCCCTTCGCGGTTTTAGGTACATACCGGGGGGGATTCAGTGCCA
TGGGATGACTAGCAGGGCTCAATACGTTGCAGCAGTCGTCATTTTTGCCA
ATGGGATATTTCTTTACCATGATTTCTTGAACGACAACAACGTGTGCAGG
CAGCACGTGAATTATCAAAAATACTCGGTCACCGATAACTCGTGTTACGA
CGGCGCGAAATTTCACTGATTCTTCAAAGAATGAAAATCAATATAACTTT
TTTATTGTGTGTTTTAATTGTTTTTTTCCCTCTCGTTCTCTTGCGCAGGT
GGGGGCGAAATCCGCGGGGGGTCAGCTACACGTTCGGGCACGACGTGATC
GAAGAATTCTTGACAAGGCACGATCTTGACCTTATCTGCCGAGCCCATCA
GGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15243:2166..2919+

>mRNA_E-fasciculatus_F_contig15243.3703.1 ID=mRNA_E-fasciculatus_F_contig15243.3703.1|Name=mRNA_E-fasciculatus_F_contig15243.3703.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=540bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15243:2166..2919+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGCAGCAATCGTGGAGGACAAGATTCTTTGCATGCACGGCGGCATCAG
CCCGGAGCTGCAGCGTCTGGGACAGATCTTGGAGATACCCCGGCCCATCG
ACGTCCCCGACGAAGGCTTGCTTTGCGACTTGCTCTGGTCGGATCCCGAG
GCCGGGATTTGCGGGTGGCAGCAATCGTGGAGGACAAGATTCTTTGCATG
CACGGCGGCATCAGCCCGGAGCTGCAGCGTCTGGGACAGATCTTGGAGAT
ACCCCGGCCCATCGACGTCCCCGACGAAGGCTTGCTTTGCGACTTGCTCT
GGTCGGATCCCGAGGCCGGGATTTGCGGGTGGGGGCGAAATCCGCGGGGG
GTCAGCTACACGTTCGGGCACGACGTGATCGAAGAATTCTTGACAAGGCA
CGATCTTGACCTTATCTGCCGAGCCCATCAGGTGGTGGGGGCGAAATCCG
CGGGGGGTCAGCTACACGTTCGGGCACGACGTGATCGAAGAATTCTTGAC
AAGGCACGATCTTGACCTTATCTGCCGAGCCCATCAGGTG
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