mRNA_E-fasciculatus_F_contig1524.3702.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1524.3702.1
Unique NamemRNA_E-fasciculatus_F_contig1524.3702.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1524.3702.1 vs. uniprot
Match: D7FRQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ7_ECTSI)

HSP 1 Score: 1596 bits (4133), Expect = 0.000e+0
Identity = 830/977 (84.95%), Postives = 867/977 (88.74%), Query Frame = 1
Query:    1 RQLLVLRSQLVRWSLKTVVVIFTMAGLTNFLVVVQDADWGLGYGRMPFHEALYFIVVSFSTVGYGDISPSTALSRVVITCLILTLFFCMPVMTNALMNIRKLTPKHGGWLSKSWGTGHIVVGCDASCLRVVSVLLRDLLAGGSMAYHHEHVVLVIPQEPTLAWDALLCLQPSFAVTYLNGDLSSAKDLRRARVADARACIVLSDRLANDTEAQDKTALVRALSANQASPPGSSVLCLVTLGRSKSRLVRLGMPVASVVCYDEVMEGLVTQACLNPGFSTVWTNMLSCMPEADYLLKARGAEQDVTRDPESTVLFETEMEYLRSLRRVTLRFRLTCFAGDCVGDAAIELHEKCGCILVALICNACSGGHRSGAKCGAGNRGRHCMRVHPDYGAIVSEDDVGVFIGASHESADLLARYCTGRATSGASGTVGQSKASVGSLRQEGWVENAFPEAENPPAGERQRGAQEHRQRTASRGDGRLERAFWSDVHDGG---AAPSVFPLGERLAGTPPGGVIVIAQSLSFALGVVISLCKAGLDLDVGGSPAVSVVCSPLWWDPATDERAERELAVRFPGVRLVKRKTECECLLEVGADKVDLVCVVSSRPEDEPTTPRTGGGAGGDGGVLGDHSGRGQGSDVWAMGVVVDVLGLVPESTRVVVRFDDSASAEQHQVISAHVRRREDAREAMRRERVAAESRDKQEEESLFVGXXXXXXXQSDTATQQQGDAPTDWNAGVTVEGSVAFGYSAAAEVRGGGVYFDDTRGVVREGFDDFFGTMSGYVSGDVVIGNAAERLLLQTMLAPDIQSLMSDVMHLVSRVPIEVLWPDHSPNARATMVGDI-DNGGGDDSRKSRLRPVTYGEAFRLLLEDRDLLALGVHRPPTHGRGPRKTGGRERWRCPGGSRYVAINSPSASFALRDGDCFFVLRRRSRPVSAFNSEPVGDPQAADTCMPSGGRVTVAFAA-AADAAEETTAPGKDMPER 2916
            RQLLVLRSQLVRWSLKTV+VIFTMAGLTNFLVVVQDADWGLGYGRMPFHEALYF+VVSFSTVGYGDISPSTALSRVVIT LILTLFFC+P++TNAL+N+ KLTPKHGG LSKSWGTGHIVVGCDASCLRVVSVLLRDLLA  SMAYHHEHVVLVIPQEPTLAWDALLCLQPSFAVTYLNGDLSSAKDLRRARVA+ARAC VLSDRLANDTEAQDKTAL+RALS NQASPPGSSVLCLVT  RSK RLVRLGMP ASVVCYDEVMEGLVTQACLNPGFSTVWTNMLSCMPEADYLLK RGAEQDVTRDPEST LFETE EYLRSLRRVTLRFRLTCFAG+C GDAAIELHEKCGCIL ALICN CSGGH+S  KCGAG R R C+RVHPDYG I+S+DDVGVFI A+HESADLLARYCTGRATSGA+ T   SKAS  SLR+EGWVENAF  AENPP G RQ G QE+RQR AS GDGR ER  WSDVHD G   + PSVFPLGE L GTPPG V+VIAQSLSFALGVV+SLC+A  DLDV GSPA+SVVCSP WWDP  DERAERELA RFP VRLVKR+TE ECLLEVGADK DLVCVVSSRPEDEPTTP+TGGG GGDG VLGDHSGRGQGSDVWAMGVVVDVLGLVPESTRVVVRFDDSASAEQHQVISAHVRRREDA+E  RRER AAES +KQ EE+LF G       Q+D ATQQQ DAP + NAG TVE SV FGYSA + V GGGVYFDDTRGVVREGFDDFFGTMSGYVSGDVV+GNAAE LLLQTMLAPDIQSLMSDVMHLVSRVPIEVLWP+HSPNAR T VGD  DN G  D R+SR+RPVTYGEAFRLLLEDRDLLALG+HRPPTHGRGPRK GGRERWRCPGGSRYVAINSPSASFALRDGDCFFVLRRRSRPVSAFNSEP  DP    TC+ SGGR T A AA AAD  E TT PGKD PER
Sbjct:  187 RQLLVLRSQLVRWSLKTVLVIFTMAGLTNFLVVVQDADWGLGYGRMPFHEALYFVVVSFSTVGYGDISPSTALSRVVITGLILTLFFCVPLVTNALVNLTKLTPKHGGCLSKSWGTGHIVVGCDASCLRVVSVLLRDLLAADSMAYHHEHVVLVIPQEPTLAWDALLCLQPSFAVTYLNGDLSSAKDLRRARVANARACFVLSDRLANDTEAQDKTALLRALSTNQASPPGSSVLCLVTHSRSKGRLVRLGMPEASVVCYDEVMEGLVTQACLNPGFSTVWTNMLSCMPEADYLLKTRGAEQDVTRDPESTALFETETEYLRSLRRVTLRFRLTCFAGECTGDAAIELHEKCGCILFALICNICSGGHKSRVKCGAGKRRRRCVRVHPDYGTIISKDDVGVFISANHESADLLARYCTGRATSGAAATAAPSKASGTSLRREGWVENAFLVAENPPVGNRQHGTQENRQRNASSGDGRFERTIWSDVHDAGGGASTPSVFPLGESLVGTPPGAVLVIAQSLSFALGVVLSLCEADDDLDVEGSPALSVVCSPTWWDPVADERAERELAARFPCVRLVKRETEYECLLEVGADKADLVCVVSSRPEDEPTTPKTGGG-GGDGDVLGDHSGRGQGSDVWAMGVVVDVLGLVPESTRVVVRFDDSASAEQHQVISAHVRRREDAQETGRRERAAAESGEKQGEENLFDGRKE----QTDRATQQQRDAPRNENAGTTVEDSVDFGYSARSGVGGGGVYFDDTRGVVREGFDDFFGTMSGYVSGDVVVGNAAELLLLQTMLAPDIQSLMSDVMHLVSRVPIEVLWPEHSPNARGTAVGDNNDNRGDGDIRRSRIRPVTYGEAFRLLLEDRDLLALGLHRPPTHGRGPRKMGGRERWRCPGGSRYVAINSPSASFALRDGDCFFVLRRRSRPVSAFNSEPAVDPLVTGTCVSSGGRATAALAATAADPTEGTTTPGKDTPER 1158          
BLAST of mRNA_E-fasciculatus_F_contig1524.3702.1 vs. uniprot
Match: A0A6H5L8C5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8C5_9PHAE)

HSP 1 Score: 1070 bits (2766), Expect = 0.000e+0
Identity = 565/718 (78.69%), Postives = 602/718 (83.84%), Query Frame = 1
Query:  790 MEGLVTQACLNPGFSTVWTNMLSCMPEADYLLKARGAEQDVTRDPESTVLFETEMEYLRSLRRVTLRFRLTCFAGDCVGDAAIELHEKCGCILVALICNACSGGHRSGAKCGAGNRGRHCMRVHPDYGAIVSEDDVGVFIGASHESADLLARYCTGRATSGASGTVGQSKASVGSLRQEGWVENAFPEAENPPAGERQRGAQEHRQRTASRGDGRLERAFWSDVHD--GGA-APSVFPLGERLAGTPPGGVIVIAQSLSFALGVVISLCKAGLDLDVGGSPAVSVVCSPLWWDPATDERAERELAVRFPGVRLVKRKTECECLLEVGADKVDLVCVVSSRPEDEPTTPRTGGGAGG----DGGVLGDHSGRGQGSDVWAMGVVVDVLGLVPESTRVVVRFDDSASAEQHQVISAHVRRREDAREAMRRERVAAESRDKQEEESLFVGXXXXXXXQSDTATQQQGDAPTDWNAGVTVEGSVAFGYSAAAEVRGGGVYFDDTRGVVREGFDDFFGTMSGYVSGDVVIGNAAERLLLQTMLAPDIQSLMSDVMHLVSRVPIEVLWPDHSPNARATMVGDIDNGGGD-DSRKSRLRPVTYGEAFRLLLEDRDLLALGVHRPPTHGRGPRKTGGRERWRCPGGSRYVAINSPSASFALRDGDCFFVLRRRSRPVSAFNSEPVGDPQAADTCMPSGGRVTVAFAA-AADAAEETTAPGKDMPER 2916
            MEGLVTQACLNPGFSTVWTNMLSCMPEADYLLKARGAEQDVTRDPEST LFETE EYLRSLRRVTLRFRLTCFAG+C GDAAIELHEKCGCIL ALICNACSGGH    KCGA  RGR C+RVHPDYGAI+S+DDVGVFI A+HESADLLARYCTGRATSGA  T   SKAS  SLR+EGWV+NAF  AENPPAG+RQ G QE+R+RTA   DG  ER  WSD HD  G A  PS+FPLGE L GTPPG V+V+AQSLSFALGVV+SLC+AG DLD+ GSPA+SVVCSP WWDP  DERAERELA RFP VRLVKR+TECECLLEVGADK  L+CVVSSRPED+PTT +TGG        DG VLGDHSGRGQGSDVWAMGVVVDVLG V ESTRVVVRFDDSASAEQHQVISAHVRRRE  RE  RRER A ES ++Q E++ F G       Q+D  +QQ  DA      G+TVE SV FGYSA A V GGGVYFDDTRGVVREGFDDFFGTMSGYVSGDVVIG+AAE LLLQTMLAPDIQ LMSDVMHLVSRVPIEVLWP+HSP AR T+VGD ++  GD D R+S +RPVTYGEAFRLLLEDRDLLALG+HRPPTHGRGPRKTG RERWRCPGGSRYVAINSPSASFALRDGDCFFVLRRRSRPVSA NSEP  DPQ   TC+PSGGR T A AA AADA EETT PGKD PER
Sbjct:    1 MEGLVTQACLNPGFSTVWTNMLSCMPEADYLLKARGAEQDVTRDPESTALFETETEYLRSLRRVTLRFRLTCFAGECAGDAAIELHEKCGCILFALICNACSGGHMRRVKCGASKRGRCCVRVHPDYGAIISKDDVGVFISANHESADLLARYCTGRATSGAVATTAPSKASGRSLRREGWVKNAFLVAENPPAGKRQHGTQENRRRTALSSDGPFERTIWSDAHDARGDAFTPSIFPLGESLVGTPPGAVLVVAQSLSFALGVVLSLCEAGADLDIEGSPALSVVCSPTWWDPVADERAERELAARFPWVRLVKRETECECLLEVGADKAGLICVVSSRPEDKPTTQKTGGXXXXXXXXDGDVLGDHSGRGQGSDVWAMGVVVDVLGSVSESTRVVVRFDDSASAEQHQVISAHVRRREHERETGRRERAATESGEEQGEDNSFDGRKE----QTDDPSQQHHDA------GMTVEDSVDFGYSARAGVGGGGVYFDDTRGVVREGFDDFFGTMSGYVSGDVVIGDAAELLLLQTMLAPDIQLLMSDVMHLVSRVPIEVLWPEHSPKARETVVGDNNDSRGDGDIRRSWIRPVTYGEAFRLLLEDRDLLALGLHRPPTHGRGPRKTGRRERWRCPGGSRYVAINSPSASFALRDGDCFFVLRRRSRPVSASNSEPAVDPQVTGTCVPSGGRATAALAATAADATEETTTPGKDTPER 708          
BLAST of mRNA_E-fasciculatus_F_contig1524.3702.1 vs. uniprot
Match: A0A6H5KTR4_9PHAE (Ion_trans_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTR4_9PHAE)

HSP 1 Score: 337 bits (863), Expect = 1.520e-104
Identity = 168/182 (92.31%), Postives = 176/182 (96.70%), Query Frame = 1
Query:    1 RQLLVLRSQLVRWSLKTVVVIFTMAGLTNFLVVVQDADWGLGYGRMPFHEALYFIVVSFSTVGYGDISPSTALSRVVITCLILTLFFCMPVMTNALMNIRKLTPKHGGWLSKSWGTGHIVVGCDASCLRVVSVLLRDLLAGGSMAYHHEHVVLVIPQEPTLAWDALLCLQPSFAVTYLNGDL 546
            RQLLVLRSQLVRWSLKTVVVIFTMAGLT+FLVVVQDADWGLGYGRMPFHEALYF+VVSFSTVGYGDISPSTALSRVVIT LILTLFFC+P++T+AL+NI KLTPKHGG LSKSWGTGHIVVGCDASCLRVVSVLLRDLLA  S+AYHHEHVVLVIPQEPTLAWDALLCLQPS AVTYLNGDL
Sbjct:   96 RQLLVLRSQLVRWSLKTVVVIFTMAGLTHFLVVVQDADWGLGYGRMPFHEALYFVVVSFSTVGYGDISPSTALSRVVITGLILTLFFCVPLVTSALVNITKLTPKHGGCLSKSWGTGHIVVGCDASCLRVVSVLLRDLLAADSVAYHHEHVVLVIPQEPTLAWDALLCLQPSSAVTYLNGDL 277          
BLAST of mRNA_E-fasciculatus_F_contig1524.3702.1 vs. uniprot
Match: A0A835YZX0_9STRA (Ion_trans domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZX0_9STRA)

HSP 1 Score: 197 bits (500), Expect = 9.280e-51
Identity = 116/306 (37.91%), Postives = 171/306 (55.88%), Query Frame = 1
Query:   25 QLVRWSLKTVVVIFTMAGLTNFLVVVQDADWGLGYGRMPFHEALYFIVVSFSTVGYGDISPSTALSRVVITCLILTLFFCMPVMTNALMNIRKLTPKHGGWLSKSWGTGHIVVGCDASCLRVVSVLLRDLLAGGSMAYHHEHVVLVIPQEPTLAWDAL-LCLQPSFAVTYLNGD---------------------------LSSAKDLRRARVADARACIVLSDRLANDTEAQDKTALVRALSANQASPPGSSVLCLVTLGRSKSRLVRLGMPVASVVCYDEVMEGLVTQACLNPGFSTVWTNMLS 858
            Q ++  L  +V +  ++G  NFLV  QD DWG G G +PFH ++YF VV+F+TVG+GD++P  AL R+++  +I+T    +PV T  +  +  + P++ G +S   G+ H+++ CD   +    VLL+++      A    HVVL+IP E + A  AL L +    A TYL GD                           L SAKDL RAR+  A A  ++SDR A DT AQD TALVRA++  QA+P    + CLV    ++ +L RLG+  A VVC   +++ L   AC +PGFST+ TNM++
Sbjct:  185 QFMKMILNLIVALMVLSGFFNFLVAQQDIDWGEGQGHLPFHTSMYFCVVAFTTVGFGDVTPPDALGRLIVIAMIITFVCLIPVQTARIAYLISIKPRYNGHVSIDKGSRHLILSCDDCGIPSAVVLLKEMTRHLDRALM-PHVVLLIPCEASEAAKALILMIGGESAATYLRGDARSAQHRAAAHTRLLTAIRYRPPPLLPLRSAKDLARARLERATAVFIISDRFAADTTAQDGTALVRAVAVKQAAPD-VRLFCLVCHAAAREQLARLGVAPAGVVCQGRIVQALAAHACTSPGFSTLLTNMIT 488          
BLAST of mRNA_E-fasciculatus_F_contig1524.3702.1 vs. uniprot
Match: D8LPX0_ECTSI (Cation chanel protein, possibly calcium-activated BK potassium channel, alpha subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX0_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 5.900e-33
Identity = 156/612 (25.49%), Postives = 246/612 (40.20%), Query Frame = 1
Query:  112 DWG--LGYGRMPFHEALYFIVVSFSTVGYGDISPSTALSRVVITCLILTLFFCMPVMTNALMNIRKLTPKHGGWLSKSWGTGHIVVGCDASCLRVVSVLLRDLLAGGSMAYHHEHVVLVIPQEPTLAWDAL-LCLQPSFAVTYLNGDLSSAKDLRRARVADARACIVLSDRLANDTEAQDKTALVRALSANQASPPGSSVLCLVTLGRSKSRLVRLGMPVASVVCYDEVMEGLVTQACLNPGFSTVWTNMLSCMPEADYLLKARGAEQDVTRDPESTVLFETEMEYLRSLRRVTLRFRLTCFAGDCVGDAAIELHEKCGCILVALICNACSGGHRSGAKCGAGNRGRHCMRVHPDYGAIVSEDDVGVFIGASHESADLLARYCTGRA-------------TSGASGTV---------GQSKASVGSLRQEGWVENAFPEAENPPAG----------------ERQRGAQEHRQ-----RTASRGDG--RLERAFWSDVHDGGAAPSVFPLGERLAGTPPGG---VIVIAQSLSFALGVVISLCKAGLDLDVGGSPAVSVVCSPLWWDPATDERAERELAVRFPGVRLVKRKTECECLLEVGADKVDLVCVVS 1794
            +WG      +M FH+ALYFI+V+FSTVGYGD+SP    SR+ I  L+   FF +P   N L ++  L+ K+ G   K    GH +VGCD +   +    L +        Y+  H+VL++P EPT+ W  L L    +  VTYL GDL S  DL R     A +C +L++R  N  E ++K   +RA++    +P     +   T G  K RLV++G+  + +VC   V   ++  AC   G ST+  N+L              A  D  +D  + +      EY   L +      +  FAG    +   EL E+ G IL+ +                  +  R  + +HP  G +++  D+G  +    + A+ +     G               +S   G+V         G + A+  +L  +G      P       G                   RGA+  R+         RG+G              G ++PS   +G + +    GG   ++++  +L+      +S      +     +    VVC    W+   D+   R L   FP VRLV        L E GA    +V V +
Sbjct:  193 EWGETTDATKMMFHDALYFIIVTFSTVGYGDMSPPDTQSRLAIVLLVGFFFFMIPRELNKLNHLLDLSSKYTGSYPKKLAGGHTIVGCDIASCGLAGGFLEEFFHEDH-GYNIMHLVLLVPHEPTMEWKRLVLKFAANDRVTYLKGDLRSTDDLARVSADTASSCFILTNRHGNLRE-EEKRGFMRAITVQDFNPSLRIFVEAPTHGM-KQRLVKVGINPSRIVCASTVNTRMLANACAWEGASTLINNLLV------------SASIDEQQDMPAWI-----KEYASGLGKEIYVVSIGAFAGRGFSELVRELFEQHGVILLGI------------------SEDRRVV-LHPGAGYVITSADLGFLVADDADVAESIVEQAVGALLPFPEKSVPQPPPSSALKGSVREGAGVKGHGSTAATAMALTADGRTAGVLPRLGRTTKGVGGRSGSGGGGSRGDVTNSRGAETAREDLQISTVGGRGEGGXXXXXXXXXXXXXGASSPSKMAIGNKRSPNNAGGGGYIVLVTPTLA-----QVSTLVEAFEAPQVPTMGFVVVCPLYDWNQERDQEEIRRLR-EFPQVRLVIGAASRASLREAGASSARMVVVTA 759          
BLAST of mRNA_E-fasciculatus_F_contig1524.3702.1 vs. uniprot
Match: A0A7S3D5A0_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D5A0_9EUKA)

HSP 1 Score: 137 bits (344), Expect = 3.320e-29
Identity = 114/414 (27.54%), Postives = 184/414 (44.44%), Query Frame = 1
Query:   13 VLRSQLVRWSLKTVVVIFTMAGLTNFLVVVQDADW--GLGYGRM-PFHEALYFIVVSFSTVGYGDISPSTALSRVVITCLILTLFFCMPVMTNALMNIRKLTPKHGGWLSKSWGTGHIVVGCDASCLRVVSVLLRDLLAGGSMAYHHEH---VVLVIPQEPTLAWDALLCL----QPSFAVTYLNGDLSSAKDLRRARVADARACIVLSDRLANDTEAQDKTALVRALSANQASPPGSSVLCLVTLGRSKSRLVRLGMPVASVVCYDEVMEGLVTQACLNPGFSTVWTNMLSCMPEADYLLKARGAEQDVTRDPESTVLFETEMEYLRSLRRVTLRFRLTCFAGDCVGDAAIELHEKCGCILVALICNACSGGHRSGAKCGAGNRGRHCMRVHPDYGAIVSEDDVGVFIGASHE 1224
            V+  Q +    K V ++   AGL  F+  + +  W     YG+   FH+ALYF VV+ +TVGYGDI+P TA+ R+++  +I      +P     L ++ KL P + G    +    H+VV  D +   V+  L           YH +H    V V    P L  D L  L    Q    ++++ GD  S  DL RAR+  A AC +L+++   +++ QD   ++RAL+    +P   + + ++     K  ++  G+    +VC DE+  G++   C  PGF+T+  N++S             +  DV   P+S  L   + EY   L +      L  F G    DA + ++EK G +L AL             K   GN     ++   DY   + + D+G  I    E
Sbjct:  210 VIVGQFINIGAKVVSLLIITAGLVQFVAEMLNQCWDGNREYGQQFKFHDALYFTVVTLTTVGYGDIAPLTAVGRMLVIIVITVGLVWLPSELGKLSSLMKLKPPYSGSFKVNTEDRHVVVCSDENFNGVLDFLEEF--------YHPDHGFSTVKVCLMSPGLPTDELKNLLLEHQSDLRLSFIRGDPISTVDLGRARMEKAEACFLLTNKFHKNSDEQDSITVLRALAVKNYAPDMKTFVQIIEPENQK-HIIAAGVQPHHIVCVDELKMGIIGLTCACPGFATLIANLIS-------------SSGDV---PKSVQLDPWQQEYSSGLSQEIYHVDLAVFQGMTYKDALLSIYEKLGIMLFALE-----------VKAKFGNVREVVIKPRMDY--TIQKGDIGFVIAEDSE 585          
BLAST of mRNA_E-fasciculatus_F_contig1524.3702.1 vs. uniprot
Match: A0A7S3D5B4_9EUKA (Hypothetical protein n=6 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D5B4_9EUKA)

HSP 1 Score: 137 bits (344), Expect = 4.970e-29
Identity = 114/414 (27.54%), Postives = 184/414 (44.44%), Query Frame = 1
Query:   13 VLRSQLVRWSLKTVVVIFTMAGLTNFLVVVQDADW--GLGYGRM-PFHEALYFIVVSFSTVGYGDISPSTALSRVVITCLILTLFFCMPVMTNALMNIRKLTPKHGGWLSKSWGTGHIVVGCDASCLRVVSVLLRDLLAGGSMAYHHEH---VVLVIPQEPTLAWDALLCL----QPSFAVTYLNGDLSSAKDLRRARVADARACIVLSDRLANDTEAQDKTALVRALSANQASPPGSSVLCLVTLGRSKSRLVRLGMPVASVVCYDEVMEGLVTQACLNPGFSTVWTNMLSCMPEADYLLKARGAEQDVTRDPESTVLFETEMEYLRSLRRVTLRFRLTCFAGDCVGDAAIELHEKCGCILVALICNACSGGHRSGAKCGAGNRGRHCMRVHPDYGAIVSEDDVGVFIGASHE 1224
            V+  Q +    K V ++   AGL  F+  + +  W     YG+   FH+ALYF VV+ +TVGYGDI+P TA+ R+++  +I      +P     L ++ KL P + G    +    H+VV  D +   V+  L           YH +H    V V    P L  D L  L    Q    ++++ GD  S  DL RAR+  A AC +L+++   +++ QD   ++RAL+    +P   + + ++     K  ++  G+    +VC DE+  G++   C  PGF+T+  N++S             +  DV   P+S  L   + EY   L +      L  F G    DA + ++EK G +L AL             K   GN     ++   DY   + + D+G  I    E
Sbjct:  210 VIVGQFINIGAKVVSLLIITAGLVQFVAEMLNQCWDGNREYGQQFKFHDALYFTVVTLTTVGYGDIAPLTAVGRMLVIIVITVGLVWLPSELGKLSSLMKLKPPYSGSFKVNTEDRHVVVCSDENFNGVLDFLEEF--------YHPDHGFSTVKVCLMSPGLPTDELKNLLLEHQSDLRLSFIRGDPISTVDLGRARMEKAEACFLLTNKFHKNSDEQDSITVLRALAVKNYAPDMKTFVQIIEPENQK-HIIAAGVQPHHIVCVDELKMGIIGLTCACPGFATLIANLIS-------------SSGDV---PKSVQLDPWQQEYSSGLSQEIYHVDLAVFQGMTYKDALLSIYEKLGIMLFALE-----------VKAKFGNVREVVIKPRMDY--TIQKGDIGFVIAEDSE 585          
BLAST of mRNA_E-fasciculatus_F_contig1524.3702.1 vs. uniprot
Match: A0A6H5L688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L688_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 5.110e-26
Identity = 83/233 (35.62%), Postives = 122/233 (52.36%), Query Frame = 1
Query:   61 IFTMAGLTNFLVVVQDADWG--LGYGRMPFHEALYFIVVSFSTVGYGDISPSTALSRVVITCLILTLFFCMPVMTNALMNIRKLTPKHGGWLSKSWGTGHIVVGCDASCLRVVSVLLRDLLAGGSMAYHHEHVVLVIPQEPTLAWDAL-LCLQPSFAVTYLNGDLSSAKDLRRARVADARACIVLSDRLANDTEAQDKTALVRALSANQASPPGSSVLCLVTLGRSKSRLVRL 750
            +F  +GL   L   +  +WG      +M FH+ALYFI+V+FSTVGYGD+SP    SR+ I  L+   FF +P   N L ++  L+ K+ G   K    GH +VGCD +   +    L +        Y+  H+VL++P EPT+ W  L L    +  VTYL GDL S  DL R     A +C +L++R  N  E ++K   +RA++    +P     +   T G  K RLV++
Sbjct:  147 LFLASGLVQVLSDGRTDEWGETTDATKMMFHDALYFIIVTFSTVGYGDMSPPDTQSRMAIVLLVGFFFFMIPRELNKLNHLLDLSSKYTGSYPKKLAGGHTIVGCDIASCGLAGGFLEEFFHEDH-GYNIMHLVLLVPHEPTMEWKRLVLKFAANDRVTYLKGDLRSTDDLARVSADTASSCFILTNRHGNLRE-EEKRGFMRAITVQDFNPSLRIFVEAPTHGM-KQRLVKV 376          
BLAST of mRNA_E-fasciculatus_F_contig1524.3702.1 vs. uniprot
Match: A0A7S1GD92_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GD92_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.570e-24
Identity = 86/255 (33.73%), Postives = 132/255 (51.76%), Query Frame = 1
Query:  136 MPFHEALYFIVVSFSTVGYGDISPSTALSRVVITCLILTLFFCMPVMTNALMNIRKLTPKHGGWLSKSWGTGH---IVVGCDASCLRVVSVLLRDLLAGGSMAYHHEH--------VVLVIPQEPTLAWDALLCLQPSFA----VTYLNGDLSSAKDLRRARVADARACIVLSDRLANDTEAQDKTALVRALSANQASPPGSSVLCLVTLGRSKSRLVRLGMPVASVVCYDEVMEGLVTQACLNPGFSTVWTNML 855
            M FH+ALY++V++F+TVGYGDISP+   SR+V+  L+L  F  +P   N L+        + G  + S   GH   +V G         SV   +L +  S  +H +H        VV++ P EP+   + LL L  S      + YL G   + +D+ R  VA A A  +L++ LA + EA+D +  ++ ++  +  P    V  LV L R  S+L    + V  VVC DE+   L+ Q+CL PGFST+  N++
Sbjct:  140 MAFHDALYYVVITFTTVGYGDISPTRWYSRLVVVLLVLVTFAVLPYQANQLVVALARRSDYRGKFTPSHREGHRHVVVTG---------SVSFTNLNSFLSELFHTDHGDQTATLKVVVLSPHEPS---EGLLSLMQSVRYRQRLVYLRGSPLNDEDMERCHVATAAAVFLLANNLAPNEEAEDASLTLKTIAVKKFVP--DDVTVLVQLMRPASKLNVNSVGVNLVVCQDELRLSLMAQSCLCPGFSTMIVNLV 380          
BLAST of mRNA_E-fasciculatus_F_contig1524.3702.1 vs. uniprot
Match: A0A1W0WT97_HYPDU (Calcium-activated potassium channel subunit alpha-1 n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0WT97_HYPDU)

HSP 1 Score: 117 bits (293), Expect = 6.160e-23
Identity = 97/331 (29.31%), Postives = 163/331 (49.24%), Query Frame = 1
Query:   25 QLVRWSLKTVVVIFTMAGLTNFLVVVQDADWGLGYGRMPFHEALYFIVVSFSTVGYGDISPSTALSRVVITCLI---LTLFFCMPVMTNALMNIRKLTPKHGGWLSKSWGTGHIVVGCDASCLRVVSVLLRDLLAGGSMAYHHE-------HVVLVIPQEPTLAWDALLCLQPSFAVTYLNGDLSSAKDLRRARVADARACIVLSDRLANDTEAQDKTALVRALSANQASPPGSSVLCLVTLGRSKSRLVRLGMPVASV------VCYDEVMEGLVTQACLNPGFSTVWTNMLSCMPEADYLLKARGAEQDVTRDPESTVLFETEMEYLRS 969
            +LV+ + + + V+   +GL + +         +G   + + E +YF V++ STVGYGDISP T L R++    I   L LF        AL++ RK   K+ G      G+GHIVV    +   +  +L           +HH+       H+V V   EP    ++ L  + +  VT+L G L   +DLRRA++ ++ AC+V++++ + D +  D TA++   S    SP   S  C+V + ++KS+ + + +P   V      +C+ E+   L+ Q+CL+PG  T+  N++ C P     L   GA+Q + RD E     E  +E   S
Sbjct:  243 RLVQLTFQLLAVLLVASGLFHLVETYATLSNPVGEPSLSYWEFVYFSVITLSTVGYGDISPKTNLGRLLCCLFIVSALALFASAVPEVFALLSSRK---KYSGPFKPETGSGHIVVTGHITYPSMTKILTE---------FHHKDWSRDDLHLVFVDFTEPDTEVESFL-KRNTTRVTFLQGSLLCLEDLRRAKLQESLACLVVTNKDSADPDRDDSTAIMTVASVKNYSP---STRCVVQILQTKSKNMLINIPTFGVKRGDAAICFQELELALMAQSCLSPGAGTLLLNLM-CSPTEGIDLT--GADQ-LVRDYELGCHMEVHLESFSS 553          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1524.3702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ7_ECTSI0.000e+084.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8C5_9PHAE0.000e+078.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTR4_9PHAE1.520e-10492.31Ion_trans_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A835YZX0_9STRA9.280e-5137.91Ion_trans domain-containing protein (Fragment) n=1... [more]
D8LPX0_ECTSI5.900e-3325.49Cation chanel protein, possibly calcium-activated ... [more]
A0A7S3D5A0_9EUKA3.320e-2927.54Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S3D5B4_9EUKA4.970e-2927.54Hypothetical protein n=6 Tax=Palpitomonas bilix Ta... [more]
A0A6H5L688_9PHAE5.110e-2635.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1GD92_9STRA2.570e-2433.73Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1W0WT97_HYPDU6.160e-2329.31Calcium-activated potassium channel subunit alpha-... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1524contigE-fasciculatus_F_contig1524:10912..17517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score1601.6
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FRQ7
KEGG koko:K04936
KEGG TC1.A.1.3.1,1.A.1.3.2,1.A.1.3.3
KEGG Pathwayko04022,ko04270,ko04911,ko04924,ko04970,ko04972,map04022,map04270,map04911,map04924,map04970,map04972
EggNOG free text desc.large conductance calcium-activated potassium channel activity
EggNOG OGsKOG1420@1,KOG1420@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionPotassium channel
Ec32 orthologEc-00_003470.1
Exons9
Model size2919
Cds size2919
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928005.5507474-CDS-E-fasciculatus_F_contig1524:10911..114571622928005.5507474-CDS-E-fasciculatus_F_contig1524:10911..11457Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 10912..11457 -
1695995785.2460372-CDS-E-fasciculatus_F_contig1524:10911..114571695995785.2460372-CDS-E-fasciculatus_F_contig1524:10911..11457Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 10912..11457 -
1622928005.5672865-CDS-E-fasciculatus_F_contig1524:11768..129171622928005.5672865-CDS-E-fasciculatus_F_contig1524:11768..12917Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 11769..12917 -
1695995785.2577186-CDS-E-fasciculatus_F_contig1524:11768..129171695995785.2577186-CDS-E-fasciculatus_F_contig1524:11768..12917Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 11769..12917 -
1622928005.5837379-CDS-E-fasciculatus_F_contig1524:13521..136551622928005.5837379-CDS-E-fasciculatus_F_contig1524:13521..13655Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 13522..13655 -
1695995785.2662463-CDS-E-fasciculatus_F_contig1524:13521..136551695995785.2662463-CDS-E-fasciculatus_F_contig1524:13521..13655Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 13522..13655 -
1622928005.5950553-CDS-E-fasciculatus_F_contig1524:13920..140561622928005.5950553-CDS-E-fasciculatus_F_contig1524:13920..14056Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 13921..14056 -
1695995785.2842312-CDS-E-fasciculatus_F_contig1524:13920..140561695995785.2842312-CDS-E-fasciculatus_F_contig1524:13920..14056Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 13921..14056 -
1622928005.6075654-CDS-E-fasciculatus_F_contig1524:14538..146731622928005.6075654-CDS-E-fasciculatus_F_contig1524:14538..14673Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 14539..14673 -
1695995785.2958894-CDS-E-fasciculatus_F_contig1524:14538..146731695995785.2958894-CDS-E-fasciculatus_F_contig1524:14538..14673Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 14539..14673 -
1622928005.6210792-CDS-E-fasciculatus_F_contig1524:15368..156391622928005.6210792-CDS-E-fasciculatus_F_contig1524:15368..15639Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 15369..15639 -
1695995785.3130035-CDS-E-fasciculatus_F_contig1524:15368..156391695995785.3130035-CDS-E-fasciculatus_F_contig1524:15368..15639Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 15369..15639 -
1622928005.6319642-CDS-E-fasciculatus_F_contig1524:15982..161701622928005.6319642-CDS-E-fasciculatus_F_contig1524:15982..16170Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 15983..16170 -
1695995785.3249667-CDS-E-fasciculatus_F_contig1524:15982..161701695995785.3249667-CDS-E-fasciculatus_F_contig1524:15982..16170Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 15983..16170 -
1622928005.6743178-CDS-E-fasciculatus_F_contig1524:16728..169001622928005.6743178-CDS-E-fasciculatus_F_contig1524:16728..16900Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 16729..16900 -
1695995785.3335679-CDS-E-fasciculatus_F_contig1524:16728..169001695995785.3335679-CDS-E-fasciculatus_F_contig1524:16728..16900Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 16729..16900 -
1622928005.71047-CDS-E-fasciculatus_F_contig1524:17329..175171622928005.71047-CDS-E-fasciculatus_F_contig1524:17329..17517Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 17330..17517 -
1695995785.3426545-CDS-E-fasciculatus_F_contig1524:17329..175171695995785.3426545-CDS-E-fasciculatus_F_contig1524:17329..17517Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 17330..17517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1524.3702.1prot_E-fasciculatus_F_contig1524.3702.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1524 10912..17517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1524.3702.1

>prot_E-fasciculatus_F_contig1524.3702.1 ID=prot_E-fasciculatus_F_contig1524.3702.1|Name=mRNA_E-fasciculatus_F_contig1524.3702.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=973bp
RQLLVLRSQLVRWSLKTVVVIFTMAGLTNFLVVVQDADWGLGYGRMPFHE
ALYFIVVSFSTVGYGDISPSTALSRVVITCLILTLFFCMPVMTNALMNIR
KLTPKHGGWLSKSWGTGHIVVGCDASCLRVVSVLLRDLLAGGSMAYHHEH
VVLVIPQEPTLAWDALLCLQPSFAVTYLNGDLSSAKDLRRARVADARACI
VLSDRLANDTEAQDKTALVRALSANQASPPGSSVLCLVTLGRSKSRLVRL
GMPVASVVCYDEVMEGLVTQACLNPGFSTVWTNMLSCMPEADYLLKARGA
EQDVTRDPESTVLFETEMEYLRSLRRVTLRFRLTCFAGDCVGDAAIELHE
KCGCILVALICNACSGGHRSGAKCGAGNRGRHCMRVHPDYGAIVSEDDVG
VFIGASHESADLLARYCTGRATSGASGTVGQSKASVGSLRQEGWVENAFP
EAENPPAGERQRGAQEHRQRTASRGDGRLERAFWSDVHDGGAAPSVFPLG
ERLAGTPPGGVIVIAQSLSFALGVVISLCKAGLDLDVGGSPAVSVVCSPL
WWDPATDERAERELAVRFPGVRLVKRKTECECLLEVGADKVDLVCVVSSR
PEDEPTTPRTGGGAGGDGGVLGDHSGRGQGSDVWAMGVVVDVLGLVPEST
RVVVRFDDSASAEQHQVISAHVRRREDAREAMRRERVAAESRDKQEEESL
FVGVGAGGNGQSDTATQQQGDAPTDWNAGVTVEGSVAFGYSAAAEVRGGG
VYFDDTRGVVREGFDDFFGTMSGYVSGDVVIGNAAERLLLQTMLAPDIQS
LMSDVMHLVSRVPIEVLWPDHSPNARATMVGDIDNGGGDDSRKSRLRPVT
YGEAFRLLLEDRDLLALGVHRPPTHGRGPRKTGGRERWRCPGGSRYVAIN
SPSASFALRDGDCFFVLRRRSRPVSAFNSEPVGDPQAADTCMPSGGRVTV
AFAAAADAAEETTAPGKDMPER*
back to top

mRNA from alignment at E-fasciculatus_F_contig1524:10912..17517-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1524.3702.1 ID=mRNA_E-fasciculatus_F_contig1524.3702.1|Name=mRNA_E-fasciculatus_F_contig1524.3702.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1524:10912..17517- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCAACTTCTTGTGCTGCGTTCCCAGCTAGTCCGCTGGAGCCTCAAGAC CGTGGTGGTCATCTTCACGATGGCGGGGCTGACGAACTTCCTGGTGGTCG TCCAAGACGCCGACTGGGGCCTGGGGTACGGCAGAATGCCCTTCCACGAG GCTCTCTACTTCATCGTCGTCTCCTTTTCCACCGTCGGGTAAGCAGCACG GCGCGAGTGCAGAGTGCGGAAATGTGGATATGGAACGCTGGGTACCAAAA TAGATGGTTTCGTATCACTAAGAAACCCGGCAGCTTGTTGATACGACAAT GAAATCAGTGTGAAACAGGCGAGAAGCGCACCCGCGAGAGCATGTATCTC GCGGTGGGCTTCTCTCCTGGTACCTCCCCCACCTGCACACCCCCACCACA AATTAGGAACAGTGTCGGAGGTGCGAACATCCTGTCCCTCTCCACTGCGA AGTCGAATATTACTACGGGCGCGTTGGGTGTTACGCTGTCTACGGCGTGC GGCCTGGCGGTTAGACGACCGGATCTCATCTGCAGACTCTCTGACCCTCA CACGCTGTCTGACCTGACCCCGACGTTCCGGGCCGTTTCCATATCGCAAT TGTTTCTCCCCCATCAGATACGGCGACATCAGCCCGTCCACTGCCCTCAG CCGGGTGGTGATCACGTGTCTCATCCTGACGCTCTTCTTCTGCATGCCCG TGATGACCAATGCGCTCATGAACATCAGGAAGCTCACCCCCAAGCACGGC GGCTGGCTCTCTAAGAGCTGGGGAACGGGCCACATCGTGGTGAGAGCTAG ATGGGCGGAGGCAGACAGACAGATAAACAACCCGAGAGAGATGCAGAGAC TGGATGAGAAAAGACAGACAGACAGATGGACAGACCTTGCGCCTATCAGC AATGCTGCCACAAGTTTGTGCGGCGGGATTGCAAAATGAAAAAGGCAAAT TGGGGCAATAGCCATTTTTGGACCGTGTCAAGGCTCAACGGTCCGTTGTT TTATTGTTTTTCTCGGGCACACTCATCAAACTGATCGCGGGTGACACGCG TCGGTTCCAGAAGTGTAGCACACTCCGGTAAGGGCGGCCCGTGCAGCGGT CGTACGCTTTATCGACCCGTCGTCGAACGCGATTCTTGGTACAAAATATT TGCATGATTGTTTTTGGTTCCCGCAACAACTGCCCTATCTGCTACTGAAC CAGGTATCAGTTCCCTCACGCATTAACCCCAACACGTGTCTTCCCCGTAG TCAGATCCCCCATCTTACGCGCCCCTCAATGTGTGCGTGTGCCCGTTGCT TATGCAATGGCGTTTTCTTTGTGCTTTCCTTCACCTTCTTCCTGCAGGTA GGCTGCGACGCGAGCTGCCTCCGGGTGGTGAGCGTGCTCCTTCGCGACCT TCTGGCGGGGGGTTCGATGGCCTACCACCACGAGCACGTGGTGCTCGTTA TTCCGCAAGAGCCGACGCTCGCGTGGGACGCGCTGCTGTGCCTGCAGCCA TCCTTCGCGGTCACGTACCTGAATGGGGATCTCAGGTTTGCGCGTGTGTT CCCAGCTGAACTCTCGCTGTCTTCCGTTGTCCGTGTACCGTGCTCTATGT ATTCTAGGTCAAGGATCTAGCGCCCGGTTGCTCTGTGCCGCCCATTTGTA TTGGTATGTGCAGAAGGTACGAAAGGGTCTGCTGTCCGTATTATACCGCC CGTGCACCTGGCCCTTGCGGTGCTATTTGGCCATCGAAGAACCGATACCG CTACCTCTGCAGGACGCGCTGCTTCCCGCTTGCCCCAATGACCAACTCGC TCAACTCGTGTCCAAACGTGCGCCCCCCCGTTTTGTTTACCATGTGTGGT AACGAACGACGCGCTCGATCCCCTTCAGCTCCGCCAAAGACTTGCGTCGG GCGAGGGTCGCGGACGCCCGGGCGTGCATCGTTCTCAGCGACCGCCTTGC CAACGACACGGAGGCGCAGGACAAGACGGCGCTGGTGCGGGCCCTCTCCG CCAACCAGGCGTCGCCCCCCGGGTCGTCTGTCCTCTGCCTCGTGACGCTC GGCAGGTCCAAGAGCCGCCTGGTGAGGCTCGGGATGCCGGTGGCCTCCGT GGTCTGCTACGACGAAGTGATGGAAGGGCTCGTCACCCAGGCCTGCCTCG TGAGTATTGAGTCGTGGTTGGTTTTTGAGCTGGGTGGTCGGGTTGGGGAG GGTGGACGCAAAGGAATTTCTTGGTTTGAATAGTCTCTACTCCCCCCGCT GTTGGAAGGGTGCTCGTATTTTCGCCAGTTTTGTTCGAATTCTGTCTCTC GTTCGACCGTTTTTGGCTCGCGCCTACCTCTAGAAGGAGGGACGCGGAAG GTGGAGGGGGGAGGCGGCAGTGGGAGCACCGCACAATGGGGGATACAGGG TAGTTTGCGGCCATCACAGCTCTACAGGGTGCAGACGTACGTGACAACTC GTGGGGCTCACCCTTGTGTTTTTTCCACCTGTCGTTGCGCCTGAAGTTGT TTGGAGAGGGAACAGCAGCGGTGCTCAGGGCACATAAAAACTGGGACATG CTCCCTACCAGCCGTTCTGCAGACGTTCTTTGCTGCCGGCCCATACATGC CCTGTTCGAGTCGTGGCGATGTTTCACGAGAAAGAGGCGGCTACCGGAAT CACGTTTGCCTCTTGCATATTTGGCAAGCCCTTCCCGGGCGTATCCCATG CCCAGACACCTGTGGTAGATGTGCTGTGACTAGAAGCCCGCCCCCCCTTT TGTGTTGCTCGACGCGCATCGCAATGCGCCTTTCTGATTTTTCGTTCTGC GATGTCGCCTTTTTTTTTTTATTAATATCGCCGACCGCCACCAGAACCCG GGGTTCTCCACGGTATGGACCAACATGCTGTCGTGCATGCCGGAGGCAGA TTATCTGCTCAAAGCGAGAGGGGCTGAACAGGATGTGACCAGAGACCCGG AGTCGACGGTGTTGTTTGAGACAGAAATGGTGAGCCCTTTCCGTCCGCCC ATCCCACTTGCACTTTCGTTTAGACTCGATTGCCCCCAACGTTGCTTTTG CTGTGTTGTGCGGTGCGACTCTGGGGGTGCCCCAAGTGTGAATGACCTTG GGGGTTCCAATTTGGTTCCATTGTAACCATTGTGCACGCTTATCAAATAC ATGCTTCTCCGTGGATGTGACAAGGTTGCTTTTTCTGAGTCGGTGGCTTT GCAAGAACCATCCGTTGTCTCTCTTTCTCTCGGCATCTTATGGTTCGGTC ATGTGGCCTGGGGTCGTCCGCCGTCGTTCTGAGGCAGCCCCCTTGCAATT GATAAGCGAACCGCATTCTAAACAACACCCGTATTCGTAGGAAACTTGTG GCACACGCACACCCGTTGCCCCGTCCGTAGTCCTCCGTCGCGCTCTTGAA CCCGGGCATGGGGGTGTTGCGCTCGCCGTACTTAACGAAGCCAACGCTGG GCTGAACGCAGGAGTATTTAAGGTCTTTGCGGCGAGTGACGTTGCGGTTC CGACTGACCTGTTTCGCCGGAGATTGCGTGGGGGACGCAGCGATCGAGCT TCACGAGAAGTGCGGCTGCATCCTCGTCGCCCTCATCTGCAACGCGTGTG AGTTCCGGGAGGCATGCTGTTTCTCTCTCTCGTCTGCACCAAAGACAAAT CCTGCGGGCCAGAGTTAAGCCAACACACAAGTCTGCTTTCCACATCGCCA ATACAAGCAGCCCAGCGCACAGGGCAAGGGAATAGGCATAGAAGCAACGA CTATCTTTGCACGGAAACGACCACCCAACCCGAGGAATCGTACGATGAGA CCGCGTCAACAACATTATCGGGAGAATAGATGGCCACGCCCCCCCCACCC CAACCCCCAAAGGTTCTGGCGGCCATAGGAGCGGGGCGAAGTGTGGGGCA GGCAACCGAGGGCGGCACTGTATGCGAGTGCATCCGGACTATGGAGCCAT CGTTTCAGAGGACGACGTGGGCGTGTTCATCGGCGCGAGCCACGAGGTGC GAGCAAAGCGGTGACGGTAGGCACAGGGCGGGTACTCATATTTTGCATGC GTGGTTAGACCATTGACCACGCGTCCTCGACAGAACTGAGCAGTGCTCAT GGGTAGGCTCTTTTGTCTCTCAGAGCTTACCGTTCGGTCCTTTGAGTTGA CTGTAGCGCCATCCAACGCCTCCTTGCTATTATCCGCTATTTTGTTTTTC AAGTTGGTTGAGTTGAACCTTTTGGCAGTGCAGTGTCAATCATTTATGAT GCCTTGGCCCCATTCCAACCTACTGGCCTCGGAGACGAGCCAACCTTGTT CGCTAAGATATACTCCCGAAGGAAAGCTTTGCGGCACGCTAGGCTGGATG CAACCTTCTCGCGCGTGACCAACACGAAACAGTGCGGCGGGCGTGGGGGT AAAACGGAGCTGATTTTGCATTCACCCGCCGACCTGCCCACATGCGTTGT CGTTCCCTACGTTCCCGTTGCCTCGTGTTTCGGTCGTTATGTTTCGTGTG TCACAGCTGAGGCATCCGTTCTCCCTTCTGTTTCCAGCAGCGACCTAATT AAAAGTGTGCCTAACGTGTGCCGCACACCCCCCCCTCTCCGAATTTACAG TCGGCTGACCTTCTGGCGCGATATTGCACCGGAAGGGCAACGTCCGGAGC GTCCGGTACGGTGGGCCAATCGAAGGCCTCCGTAGGGTCTCTCCGGCAAG AGGGGTGGGTCGAGAACGCCTTCCCCGAAGCGGAAAATCCGCCGGCCGGT GAGCGGCAACGTGGGGCGCAGGAACACCGGCAGAGGACTGCTTCCCGCGG TGACGGCCGTTTGGAGCGCGCATTCTGGTCCGATGTCCACGACGGCGGCG CCGCACCCTCGGTGTTCCCGCTAGGCGAACGTCTCGCTGGAACTCCACCG GGGGGCGTTATCGTGATCGCTCAGTCGCTCTCTTTCGCTCTAGGAGTGGT CATCTCCCTGTGCAAGGCCGGCCTTGACCTTGACGTCGGGGGTTCGCCGG CCGTGAGCGTTGTCTGTTCGCCGCTGTGGTGGGACCCGGCGACCGACGAG CGCGCAGAACGGGAGCTGGCGGTCCGTTTCCCCGGCGTCCGACTCGTCAA GCGGAAGACCGAGTGCGAGTGCTTGCTCGAAGTGGGCGCCGACAAAGTGG ACCTTGTCTGCGTGGTGTCCAGCCGGCCGGAGGACGAGCCGACTACGCCG AGGACCGGCGGCGGCGCCGGCGGTGACGGCGGCGTGCTCGGAGACCATAG CGGCCGGGGGCAGGGGTCGGACGTGTGGGCCATGGGAGTGGTCGTCGACG TCCTCGGTTTGGTGCCCGAATCGACGCGGGTGGTGGTGAGGTTTGACGAC TCTGCCAGCGCCGAGCAGCACCAGGTCATCAGCGCACACGTGCGGCGGCG CGAAGATGCGCGAGAGGCCATGCGTCGGGAACGGGTCGCCGCAGAAAGCA GAGACAAGCAGGAAGAGGAGAGCTTGTTCGTCGGGGTGGGGGCGGGCGGG AATGGGCAGTCGGACACAGCTACTCAACAGCAGGGCGACGCACCCACGGA CTGGAATGCGGGCGTGACGGTGGAAGGCTCGGTCGCTTTCGGTTACAGCG CCGCGGCTGAGGTTCGTGGAGGCGGGGTCTACTTCGACGACACTCGAGGC GTGGTGCGTGAGGGATTTGACGATTTCTTCGGCACTATGTCAGGGTACGT GTCCGGAGACGTCGTCATCGGCAATGCCGCGGAGCGTCTCTTGCTTCAGG TGATTGGGAAATAAAAATTGTTTTCAACGAGCTCGTGTTTGTTGTCCAAC AAGGGCAGCCTGACCGAACTGTATCGCAAGACTGGTTAATATTTACTATT TTTTTTTGTTTTTCCACCAGCGGTTCCATATCCTTGCTAAGAAAAATATG GCTGTGTGCGGTATCAATGTTGATGTCGACGTGATGAAGGGACCACAATC TAGTCACTCACGCGCCTGTGTTTGATGTTCCCCACTCCCTGAATTGACAC CACGATATGACGCCCCCTAAACCTCCCCAGGCCCCATCCTCCCCTCGGTT TTGGTTTCAGACCATGTTGGCGCCCGACATCCAGTCTCTCATGAGCGACG TCATGCACCTCGTGTCCCGCGTCCCCATCGAGGTCCTGTGGCCCGATCAC TCTCCCAATGCACGAGCAACGATGGTTGGAGACATCGACAACGGCGGCGG CGACGACAGCAGAAAAAGTCGGTTACGCCCTGTGACGTACGGAGAGGCCT TCCGATTGCTCCTGGAAGACCGAGACCTGCTTGCTTTGGGCGTTCATCGC CCCCCGACCCACGGGCGAGGACCGAGAAAAACGGGTGGACGCGAGAGATG GCGCTGCCCCGGCGGCTCGCGGTACGTGGCGATCAACAGCCCTAGTGCGA GCTTTGCCCTTCGAGACGGTGACTGCTTCTTCGTCCTACGAAGACGGAGC CGACCGGTGAGCGCGTTCAACTCAGAGCCCGTTGGTGATCCTCAGGCTGC CGACACCTGTATGCCATCCGGCGGTCGTGTAACGGTCGCCTTTGCTGCTG CTGCTGACGCCGCCGAAGAGACGACCGCGCCAGGAAAGGACATGCCGGAA CGATAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1524:10912..17517-

>mRNA_E-fasciculatus_F_contig1524.3702.1 ID=mRNA_E-fasciculatus_F_contig1524.3702.1|Name=mRNA_E-fasciculatus_F_contig1524.3702.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=5838bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1524:10912..17517- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCAACTTCTTGTGCTGCGTTCCCAGCTAGTCCGCTGGAGCCTCAAGAC
CGTGGTGGTCATCTTCACGATGGCGGGGCTGACGAACTTCCTGGTGGTCG
TCCAAGACGCCGACTGGGGCCTGGGGTACGGCAGAATGCCCTTCCACGAG
GCTCTCTACTTCATCGTCGTCTCCTTTTCCACCGTCGGAGGCAACTTCTT
GTGCTGCGTTCCCAGCTAGTCCGCTGGAGCCTCAAGACCGTGGTGGTCAT
CTTCACGATGGCGGGGCTGACGAACTTCCTGGTGGTCGTCCAAGACGCCG
ACTGGGGCCTGGGGTACGGCAGAATGCCCTTCCACGAGGCTCTCTACTTC
ATCGTCGTCTCCTTTTCCACCGTCGGATACGGCGACATCAGCCCGTCCAC
TGCCCTCAGCCGGGTGGTGATCACGTGTCTCATCCTGACGCTCTTCTTCT
GCATGCCCGTGATGACCAATGCGCTCATGAACATCAGGAAGCTCACCCCC
AAGCACGGCGGCTGGCTCTCTAAGAGCTGGGGAACGGGCCACATCGTGAT
ACGGCGACATCAGCCCGTCCACTGCCCTCAGCCGGGTGGTGATCACGTGT
CTCATCCTGACGCTCTTCTTCTGCATGCCCGTGATGACCAATGCGCTCAT
GAACATCAGGAAGCTCACCCCCAAGCACGGCGGCTGGCTCTCTAAGAGCT
GGGGAACGGGCCACATCGTGGTAGGCTGCGACGCGAGCTGCCTCCGGGTG
GTGAGCGTGCTCCTTCGCGACCTTCTGGCGGGGGGTTCGATGGCCTACCA
CCACGAGCACGTGGTGCTCGTTATTCCGCAAGAGCCGACGCTCGCGTGGG
ACGCGCTGCTGTGCCTGCAGCCATCCTTCGCGGTCACGTACCTGAATGGG
GATCTCAGGTAGGCTGCGACGCGAGCTGCCTCCGGGTGGTGAGCGTGCTC
CTTCGCGACCTTCTGGCGGGGGGTTCGATGGCCTACCACCACGAGCACGT
GGTGCTCGTTATTCCGCAAGAGCCGACGCTCGCGTGGGACGCGCTGCTGT
GCCTGCAGCCATCCTTCGCGGTCACGTACCTGAATGGGGATCTCAGCTCC
GCCAAAGACTTGCGTCGGGCGAGGGTCGCGGACGCCCGGGCGTGCATCGT
TCTCAGCGACCGCCTTGCCAACGACACGGAGGCGCAGGACAAGACGGCGC
TGGTGCGGGCCCTCTCCGCCAACCAGGCGTCGCCCCCCGGGTCGTCTGTC
CTCTGCCTCGTGACGCTCGGCAGGTCCAAGAGCCGCCTGGTGAGGCTCGG
GATGCCGGTGGCCTCCGTGGTCTGCTACGACGAAGTGATGGAAGGGCTCG
TCACCCAGGCCTGCCTCCTCCGCCAAAGACTTGCGTCGGGCGAGGGTCGC
GGACGCCCGGGCGTGCATCGTTCTCAGCGACCGCCTTGCCAACGACACGG
AGGCGCAGGACAAGACGGCGCTGGTGCGGGCCCTCTCCGCCAACCAGGCG
TCGCCCCCCGGGTCGTCTGTCCTCTGCCTCGTGACGCTCGGCAGGTCCAA
GAGCCGCCTGGTGAGGCTCGGGATGCCGGTGGCCTCCGTGGTCTGCTACG
ACGAAGTGATGGAAGGGCTCGTCACCCAGGCCTGCCTCAACCCGGGGTTC
TCCACGGTATGGACCAACATGCTGTCGTGCATGCCGGAGGCAGATTATCT
GCTCAAAGCGAGAGGGGCTGAACAGGATGTGACCAGAGACCCGGAGTCGA
CGGTGTTGTTTGAGACAGAAATGAACCCGGGGTTCTCCACGGTATGGACC
AACATGCTGTCGTGCATGCCGGAGGCAGATTATCTGCTCAAAGCGAGAGG
GGCTGAACAGGATGTGACCAGAGACCCGGAGTCGACGGTGTTGTTTGAGA
CAGAAATGGAGTATTTAAGGTCTTTGCGGCGAGTGACGTTGCGGTTCCGA
CTGACCTGTTTCGCCGGAGATTGCGTGGGGGACGCAGCGATCGAGCTTCA
CGAGAAGTGCGGCTGCATCCTCGTCGCCCTCATCTGCAACGCGTGAGTAT
TTAAGGTCTTTGCGGCGAGTGACGTTGCGGTTCCGACTGACCTGTTTCGC
CGGAGATTGCGTGGGGGACGCAGCGATCGAGCTTCACGAGAAGTGCGGCT
GCATCCTCGTCGCCCTCATCTGCAACGCGTGTTCTGGCGGCCATAGGAGC
GGGGCGAAGTGTGGGGCAGGCAACCGAGGGCGGCACTGTATGCGAGTGCA
TCCGGACTATGGAGCCATCGTTTCAGAGGACGACGTGGGCGTGTTCATCG
GCGCGAGCCACGAGGTTCTGGCGGCCATAGGAGCGGGGCGAAGTGTGGGG
CAGGCAACCGAGGGCGGCACTGTATGCGAGTGCATCCGGACTATGGAGCC
ATCGTTTCAGAGGACGACGTGGGCGTGTTCATCGGCGCGAGCCACGAGTC
GGCTGACCTTCTGGCGCGATATTGCACCGGAAGGGCAACGTCCGGAGCGT
CCGGTACGGTGGGCCAATCGAAGGCCTCCGTAGGGTCTCTCCGGCAAGAG
GGGTGGGTCGAGAACGCCTTCCCCGAAGCGGAAAATCCGCCGGCCGGTGA
GCGGCAACGTGGGGCGCAGGAACACCGGCAGAGGACTGCTTCCCGCGGTG
ACGGCCGTTTGGAGCGCGCATTCTGGTCCGATGTCCACGACGGCGGCGCC
GCACCCTCGGTGTTCCCGCTAGGCGAACGTCTCGCTGGAACTCCACCGGG
GGGCGTTATCGTGATCGCTCAGTCGCTCTCTTTCGCTCTAGGAGTGGTCA
TCTCCCTGTGCAAGGCCGGCCTTGACCTTGACGTCGGGGGTTCGCCGGCC
GTGAGCGTTGTCTGTTCGCCGCTGTGGTGGGACCCGGCGACCGACGAGCG
CGCAGAACGGGAGCTGGCGGTCCGTTTCCCCGGCGTCCGACTCGTCAAGC
GGAAGACCGAGTGCGAGTGCTTGCTCGAAGTGGGCGCCGACAAAGTGGAC
CTTGTCTGCGTGGTGTCCAGCCGGCCGGAGGACGAGCCGACTACGCCGAG
GACCGGCGGCGGCGCCGGCGGTGACGGCGGCGTGCTCGGAGACCATAGCG
GCCGGGGGCAGGGGTCGGACGTGTGGGCCATGGGAGTGGTCGTCGACGTC
CTCGGTTTGGTGCCCGAATCGACGCGGGTGGTGGTGAGGTTTGACGACTC
TGCCAGCGCCGAGCAGCACCAGGTCATCAGCGCACACGTGCGGCGGCGCG
AAGATGCGCGAGAGGCCATGCGTCGGGAACGGGTCGCCGCAGAAAGCAGA
GACAAGCAGGAAGAGGAGAGCTTGTTCGTCGGGGTGGGGGCGGGCGGGAA
TGGGCAGTCGGACACAGCTACTCAACAGCAGGGCGACGCACCCACGGACT
GGAATGCGGGCGTGACGGTGGAAGGCTCGGTCGCTTTCGGTTACAGCGCC
GCGGCTGAGGTTCGTGGAGGCGGGGTCTACTTCGACGACACTCGAGGCGT
GGTGCGTGAGGGATTTGACGATTTCTTCGGCACTATGTCAGGGTACGTGT
CCGGAGACGTCGTCATCGGCAATGCCGCGGAGCGTCTCTTGCTTCAGTCG
GCTGACCTTCTGGCGCGATATTGCACCGGAAGGGCAACGTCCGGAGCGTC
CGGTACGGTGGGCCAATCGAAGGCCTCCGTAGGGTCTCTCCGGCAAGAGG
GGTGGGTCGAGAACGCCTTCCCCGAAGCGGAAAATCCGCCGGCCGGTGAG
CGGCAACGTGGGGCGCAGGAACACCGGCAGAGGACTGCTTCCCGCGGTGA
CGGCCGTTTGGAGCGCGCATTCTGGTCCGATGTCCACGACGGCGGCGCCG
CACCCTCGGTGTTCCCGCTAGGCGAACGTCTCGCTGGAACTCCACCGGGG
GGCGTTATCGTGATCGCTCAGTCGCTCTCTTTCGCTCTAGGAGTGGTCAT
CTCCCTGTGCAAGGCCGGCCTTGACCTTGACGTCGGGGGTTCGCCGGCCG
TGAGCGTTGTCTGTTCGCCGCTGTGGTGGGACCCGGCGACCGACGAGCGC
GCAGAACGGGAGCTGGCGGTCCGTTTCCCCGGCGTCCGACTCGTCAAGCG
GAAGACCGAGTGCGAGTGCTTGCTCGAAGTGGGCGCCGACAAAGTGGACC
TTGTCTGCGTGGTGTCCAGCCGGCCGGAGGACGAGCCGACTACGCCGAGG
ACCGGCGGCGGCGCCGGCGGTGACGGCGGCGTGCTCGGAGACCATAGCGG
CCGGGGGCAGGGGTCGGACGTGTGGGCCATGGGAGTGGTCGTCGACGTCC
TCGGTTTGGTGCCCGAATCGACGCGGGTGGTGGTGAGGTTTGACGACTCT
GCCAGCGCCGAGCAGCACCAGGTCATCAGCGCACACGTGCGGCGGCGCGA
AGATGCGCGAGAGGCCATGCGTCGGGAACGGGTCGCCGCAGAAAGCAGAG
ACAAGCAGGAAGAGGAGAGCTTGTTCGTCGGGGTGGGGGCGGGCGGGAAT
GGGCAGTCGGACACAGCTACTCAACAGCAGGGCGACGCACCCACGGACTG
GAATGCGGGCGTGACGGTGGAAGGCTCGGTCGCTTTCGGTTACAGCGCCG
CGGCTGAGGTTCGTGGAGGCGGGGTCTACTTCGACGACACTCGAGGCGTG
GTGCGTGAGGGATTTGACGATTTCTTCGGCACTATGTCAGGGTACGTGTC
CGGAGACGTCGTCATCGGCAATGCCGCGGAGCGTCTCTTGCTTCAGACCA
TGTTGGCGCCCGACATCCAGTCTCTCATGAGCGACGTCATGCACCTCGTG
TCCCGCGTCCCCATCGAGGTCCTGTGGCCCGATCACTCTCCCAATGCACG
AGCAACGATGGTTGGAGACATCGACAACGGCGGCGGCGACGACAGCAGAA
AAAGTCGGTTACGCCCTGTGACGTACGGAGAGGCCTTCCGATTGCTCCTG
GAAGACCGAGACCTGCTTGCTTTGGGCGTTCATCGCCCCCCGACCCACGG
GCGAGGACCGAGAAAAACGGGTGGACGCGAGAGATGGCGCTGCCCCGGCG
GCTCGCGGTACGTGGCGATCAACAGCCCTAGTGCGAGCTTTGCCCTTCGA
GACGGTGACTGCTTCTTCGTCCTACGAAGACGGAGCCGACCGGTGAGCGC
GTTCAACTCAGAGCCCGTTGGTGATCCTCAGGCTGCCGACACCTGTATGC
CATCCGGCGGTCGTGTAACGGTCGCCTTTGCTGCTGCTGCTGACGCCGCC
GAAGAGACGACCGCGCCAGGAAAGGACATGCCGGAACGATAGACCATGTT
GGCGCCCGACATCCAGTCTCTCATGAGCGACGTCATGCACCTCGTGTCCC
GCGTCCCCATCGAGGTCCTGTGGCCCGATCACTCTCCCAATGCACGAGCA
ACGATGGTTGGAGACATCGACAACGGCGGCGGCGACGACAGCAGAAAAAG
TCGGTTACGCCCTGTGACGTACGGAGAGGCCTTCCGATTGCTCCTGGAAG
ACCGAGACCTGCTTGCTTTGGGCGTTCATCGCCCCCCGACCCACGGGCGA
GGACCGAGAAAAACGGGTGGACGCGAGAGATGGCGCTGCCCCGGCGGCTC
GCGGTACGTGGCGATCAACAGCCCTAGTGCGAGCTTTGCCCTTCGAGACG
GTGACTGCTTCTTCGTCCTACGAAGACGGAGCCGACCGGTGAGCGCGTTC
AACTCAGAGCCCGTTGGTGATCCTCAGGCTGCCGACACCTGTATGCCATC
CGGCGGTCGTGTAACGGTCGCCTTTGCTGCTGCTGCTGACGCCGCCGAAG
AGACGACCGCGCCAGGAAAGGACATGCCGGAACGATAG
back to top