mRNA_E-fasciculatus_F_contig1524.3701.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1524.3701.1
Unique NamemRNA_E-fasciculatus_F_contig1524.3701.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1524.3701.1 vs. uniprot
Match: D7FRQ6_ECTSI (Putative methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRQ6_ECTSI)

HSP 1 Score: 628 bits (1619), Expect = 7.200e-221
Identity = 336/399 (84.21%), Postives = 356/399 (89.22%), Query Frame = 1
Query:  310 TRYTIDVDVHPDVASVAVKHALQLPRFLHHYPISSHTQAAYRHAVDFVLEFHRSNSPEEQQQRSSLPVVLDSGCGTGRSSALLARSNPHLPVIGIDRSAVRLAKGGGGAEKEVEAHIHERDSSTRQAGAGQGSDNRVDARSAHGSSGEKKHLPSQRKGNRGNRRREPLPENLLLLRADLVDLWILASRDNAWEIKEHHILYPNPYPKRSQLRSRWHGHSVFPVILSLGGVITLRSNWKAYLDEVCQAVLAINGEAQTTKGEGDSAADEGGVGDLESKRTSSGGKDGDGKVAGMRAAVVSSVVSGRRLTPSTTLSATESDDKAGTTGGDVSFSIGRALIGDENRAQVPATVAAAAASYAASARAGPFTFVPAVPAATNFEGKYAAVGETVYELRLEPKVS 1506
            TRYTIDVDVHPD ASVAVKHALQLPRFLHHYPISSHTQAAYRHAVDFVL FHRS  P+EQQQRS LPVVLDSGCGTGRSS LLARS PHLPVIGIDRSAVRL+KGGG A K VE H+H+ +SSTRQAGA QG ++RVDAR AHGSSGEK   P Q+KGNR NR REPLPENLLLLRADLVDLWILASR+NAWEIKEH+ILYPNPYPKRSQLRSRWHGHSVFPV+LSLGGVITLRSNW+ YLDEVCQAVLAING AQTT+GEGDSAADEGG+GDLESKRTSSGGKDG G+V+G  AAV S+ VS       T LSATESDD A TTGGDVSF IGRALIGDE+RA+VPATVAAAA SYAASARAGP TFVPAVPAATNFE KY AVGETVYELRLEPK+S
Sbjct:    2 TRYTIDVDVHPDAASVAVKHALQLPRFLHHYPISSHTQAAYRHAVDFVLAFHRS--PQEQQQRSPLPVVLDSGCGTGRSSVLLARSYPHLPVIGIDRSAVRLSKGGGDAGKRVEEHMHQHNSSTRQAGAEQGRNDRVDARRAHGSSGEKNRPPLQKKGNRDNRLREPLPENLLLLRADLVDLWILASRENAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAAQTTEGEGDSAADEGGLGDLESKRTSSGGKDGAGEVSGTDAAVASAAVS-------TKLSATESDDSAETTGGDVSFGIGRALIGDESRAEVPATVAAAAVSYAASARAGPLTFVPAVPAATNFEAKYVAVGETVYELRLEPKLS 391          
BLAST of mRNA_E-fasciculatus_F_contig1524.3701.1 vs. uniprot
Match: A0A8J5XCC6_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XCC6_DIALT)

HSP 1 Score: 145 bits (365), Expect = 2.390e-35
Identity = 89/242 (36.78%), Postives = 125/242 (51.65%), Query Frame = 1
Query:  337 HPDVASVAVKHALQLPRFLHHYPISSHTQAAYRHAVDFVLEFHRSNSPEEQQQRSSLPVVLDSGCGTGRSSALLARSNPHLPVIGIDRSAVRLAKGGGGAEKEVEAHIHERDSSTRQAGAGQGSDNRVDARSAHGSSGEKKHLPSQRKGNRGNRRREPLPENLLLLRADLVDLWILASRDNAWEIKEHHILYPNPYPKRSQLRSRWHGHSVFPVILSLGGVITLRSNWKAYLDEVCQAVLAI 1062
            H   A+VA KH L+L  FLH+ P   HT+A +     ++ E H +       +R +  ++LDSGCGTGRS+ LLA+ +P   VIG+DRS  RL K              +RD S   A A +G +  V                            +P  +N LL+RADL   W LA  ++ W ++ H +L+PNPYPK + L  RWH H  +P++L+LGG + LRSNW+ YL+E   A  AI
Sbjct:   30 HARTAAVACKHVLELDSFLHNAPTPEHTRATFGATAAWLAERHGA-------RRGAGGLLLDSGCGTGRSTLLLAQQHPDCLVIGVDRSLARLRK-------------DKRDISPGAACAPRGDEGPV----------------------------QPAFDNALLVRADLPAFWRLAV-ESGWRLRAHRLLFPNPYPKPAHLPRRWHAHPSWPLVLALGGELELRSNWRTYLEETVIATSAI 222          
BLAST of mRNA_E-fasciculatus_F_contig1524.3701.1 vs. uniprot
Match: A0A0B4XNW9_9GAMM (Methyltransferase n=2 Tax=Alcanivorax TaxID=59753 RepID=A0A0B4XNW9_9GAMM)

HSP 1 Score: 140 bits (354), Expect = 1.430e-34
Identity = 90/244 (36.89%), Postives = 118/244 (48.36%), Query Frame = 1
Query:  337 HPDVASVAVKHALQLPRFLHHYPISSHTQAAYRHAVDFVLEFHRSNSPEEQQQRSSLPVVLDSGCGTGRSSALLARSNPHLPVIGIDRSAVRLAKGGGGAEKEVEAHIHERDSSTRQAGAGQGSDNRVDARSAHGSSGEKKHLPSQRKGNRGNRRREPLPENLLLLRADLVDLWILASRDNAWEIKEHHILYPNPYPKRSQLRSRWHGHSVFPVILSLGGVITLRSNWKAYLDEVCQAVLAING 1068
            H  +A+V V+H     R     P+++HT+AA+  A D+              Q +  P+VLDSGCGTGRSS  LA   P   VIG+D+S  RL +G                                             HL           R +PLP NLLLLRA+  D W LA  +  W ++EH + YPNP+PK + LR RWHGH VFPV+L LGG + LRSNW  YL+E+ +  LA+ G
Sbjct:   16 HEQLAAVVVRHLAHPWRA----PVAAHTRAAFAEAADW-----------RAAQGADRPLVLDSGCGTGRSSVWLAGHYPEALVIGLDQSGERLRRG---------------------------------------------HL-----------RFDPLPANLLLLRAEAADFWRLAV-EAGWRVREHCLFYPNPWPKSAHLRRRWHGHPVFPVLLQLGGQLRLRSNWPVYLEEM-RLALALAG 186          
BLAST of mRNA_E-fasciculatus_F_contig1524.3701.1 vs. uniprot
Match: UPI000DBA2FDA (methyltransferase domain-containing protein n=1 Tax=Alcanivorax indicus TaxID=2202653 RepID=UPI000DBA2FDA)

HSP 1 Score: 139 bits (351), Expect = 2.900e-34
Identity = 89/245 (36.33%), Postives = 123/245 (50.20%), Query Frame = 1
Query:  334 VHPDVASVAVKHALQLPRFLHHYPISSHTQAAYRHAVDFVLEFHRSNSPEEQQQRSSLPVVLDSGCGTGRSSALLARSNPHLPVIGIDRSAVRLAKGGGGAEKEVEAHIHERDSSTRQAGAGQGSDNRVDARSAHGSSGEKKHLPSQRKGNRGNRRREPLPENLLLLRADLVDLWILASRDNAWEIKEHHILYPNPYPKRSQLRSRWHGHSVFPVILSLGGVITLRSNWKAYLDEVCQAVLAING 1068
            +H D+  V  +H     R     P+++HT+AA+  A      ++R+ SP         P++LDSGCGTGRSS LLA+ +P   VIG+D+SA RLA+ G G                                                            P+NLLLLRA+  D W LA  +  W+++ H++LYPNP+PK + L+ RWHGH VFP +L+LGG +TLRSNW  YL E+ QA LA+ G
Sbjct:   15 IHEDLERVVKRHLSSAWRA----PVAAHTRAAFAEAD----AWYRA-SP-------GAPLILDSGCGTGRSSRLLAQRHPEARVIGLDQSAHRLARSGSG------------------------------------------------------------PDNLLLLRAECADFWRLAE-EAGWQLEAHYLLYPNPWPKAAHLKRRWHGHPVFPTMLALGGRLTLRSNWGLYLQEM-QAALALAG 181          
BLAST of mRNA_E-fasciculatus_F_contig1524.3701.1 vs. uniprot
Match: A0A1H5TDG6_9GAMM (tRNA G46 methylase TrmB n=3 Tax=Alcanivorax TaxID=59753 RepID=A0A1H5TDG6_9GAMM)

HSP 1 Score: 139 bits (351), Expect = 3.150e-34
Identity = 92/250 (36.80%), Postives = 118/250 (47.20%), Query Frame = 1
Query:  319 TIDVDVHPDVASVAVKHALQLPRFLHHYPISSHTQAAYRHAVDFVLEFHRSNSPEEQQQRSSLPVVLDSGCGTGRSSALLARSNPHLPVIGIDRSAVRLAKGGGGAEKEVEAHIHERDSSTRQAGAGQGSDNRVDARSAHGSSGEKKHLPSQRKGNRGNRRREPLPENLLLLRADLVDLWILASRDNAWEIKEHHILYPNPYPKRSQLRSRWHGHSVFPVILSLGGVITLRSNWKAYLDEVCQAVLAING 1068
            T    +H D+  V  +H LQ P      PI+ H   A+R    +              Q S  P++LDSGCGTGRSS  LA  NP+  V+G+D+SAVRL                                                        +R  RR E LP+NLLLLRAD   LW L + +  W++  H ILYPNP+PK + L+ RWHGH V+P +LSLGG + +RSNW  YL EV QA L I+G
Sbjct:   10 TNQTSIHDDLDRVVRRH-LQHPW---RAPIADHDVQAFRRLQQW-----------RDAQGSERPLMLDSGCGTGRSSRALASQNPNALVVGVDQSAVRL--------------------------------------------------------DRATRRFETLPDNLLLLRADCAGLWRLMAGEG-WQLHRHQILYPNPWPKSAHLKRRWHGHPVWPTLLSLGGELEMRSNWPLYLQEV-QAALQISG 186          
BLAST of mRNA_E-fasciculatus_F_contig1524.3701.1 vs. uniprot
Match: A0A3D9DW02_9GAMM (tRNA G46 methylase TrmB n=1 Tax=Kushneria indalinina DSM 14324 TaxID=1122140 RepID=A0A3D9DW02_9GAMM)

HSP 1 Score: 139 bits (351), Expect = 4.150e-34
Identity = 94/247 (38.06%), Postives = 120/247 (48.58%), Query Frame = 1
Query:  334 VHPDVASVAVKHAL--QLPRFLHHYPISSHTQAAYRHAVDFVLEFHRSNSPEEQQQRSSLPVVLDSGCGTGRSSALLARSNPHLPVIGIDRSAVRLAKGGGGAEKEVEAHIHERDSSTRQAGAGQGSDNRVDARSAHGSSGEKKHLPSQRKGNRGNRRREPLPENLLLLRADLVDLWILASRDNAWEIKEHHILYPNPYPKRSQLRSRWHGHSVFPVILSLGGVITLRSNWKAYLDEVCQAVLAING 1068
            +HPD+A   V+ AL  Q  R     PI+ HT AA+  A  F              Q    P++LD+GCGTGRS+  LAR +P   V+GIDRSA RL++                   TR+ GA                                       P+N LL+RADLVD W LA     W+   H +LYPNPYPK SQL+ RWH H VFPV+++LGGV+TLRSNW+ Y+DE   A+    G
Sbjct:   15 LHPDLAH-HVQRALDSQWQR-----PIADHTCAAFETAQQFY-------------QAHGGPLILDAGCGTGRSTRQLARYHPEACVLGIDRSADRLSR-----------------DYTRELGA--------------------------------------FPDNALLVRADLVDFWRLAY-SAGWQPVRHFLLYPNPYPKASQLKRRWHAHPVFPVVMALGGVLTLRSNWQVYVDEFACAINLATG 186          
BLAST of mRNA_E-fasciculatus_F_contig1524.3701.1 vs. uniprot
Match: A0A845MMI4_9GAMM (Methyltransferase domain-containing protein n=1 Tax=Alcanivorax sp. DP30 TaxID=2606217 RepID=A0A845MMI4_9GAMM)

HSP 1 Score: 138 bits (348), Expect = 8.220e-34
Identity = 89/245 (36.33%), Postives = 115/245 (46.94%), Query Frame = 1
Query:  334 VHPDVASVAVKHALQLPRFLHHYPISSHTQAAYRHAVDFVLEFHRSNSPEEQQQRSSLPVVLDSGCGTGRSSALLARSNPHLPVIGIDRSAVRLAKGGGGAEKEVEAHIHERDSSTRQAGAGQGSDNRVDARSAHGSSGEKKHLPSQRKGNRGNRRREPLPENLLLLRADLVDLWILASRDNAWEIKEHHILYPNPYPKRSQLRSRWHGHSVFPVILSLGGVITLRSNWKAYLDEVCQAVLAING 1068
            VH D+  V V+H     +     P + H + A+  A  +             +Q S  P++LDSGCGTGRSS  LAR+NP   VIG D+SA RL K                                                          RR  PLP+NLLLLR+D   LW L   +  W++  H ILYPNP+PK + L+ RWHGH V+P +L+LGG + LRSNW  YL EV QA LA++G
Sbjct:   15 VHTDLEKVVVRHLANPWQA----PFADHDREAFAQASQW-----------RAKQGSERPLMLDSGCGTGRSSVHLARANPQALVIGADQSADRLTK--------------------------------------------------------AQRRFAPLPDNLLLLRSDCAGLWRLMV-EAGWQLARHQILYPNPWPKSAHLKRRWHGHPVWPAVLALGGELELRSNWPIYLQEV-QAALALSG 186          
BLAST of mRNA_E-fasciculatus_F_contig1524.3701.1 vs. uniprot
Match: UPI001CBC5452 (SAM-dependent methyltransferase n=1 Tax=Alcanivorax limicola TaxID=2874102 RepID=UPI001CBC5452)

HSP 1 Score: 137 bits (346), Expect = 1.550e-33
Identity = 83/218 (38.07%), Postives = 108/218 (49.54%), Query Frame = 1
Query:  403 PISSHTQAAYRHAVDFVLEFHRSNSPEEQQQRSSLPVVLDSGCGTGRSSALLARSNPHLPVIGIDRSAVRLAKGGGGAEKEVEAHIHERDSSTRQAGAGQGSDNRVDARSAHGSSGEKKHLPSQRKGNRGNRRREPLPENLLLLRADLVDLWILASRDNAWEIKEHHILYPNPYPKRSQLRSRWHGHSVFPVILSLGGVITLRSNWKAYLDEVCQAVL 1056
            P++ HT+AA+  A+ ++ E            R   PV+LDSGCGT RSS  LA  +P   VIGID+SA RLA+G                   R AGA                                      LP+NLLLLRA+  D W LA  +  W +  H++LYPNP+PK + L+ RWHGH VFP +L+LGG + +RSNW  YL E+ QA L
Sbjct:   34 PVAEHTRAAFAEALAWLAE------------RQDAPVILDSGCGTARSSRWLAAQHPGAAVIGIDQSAHRLARG-------------------RDAGA--------------------------------------LPDNLLLLRAECADFWRLAE-EGGWRLMAHYLLYPNPWPKAAHLKRRWHGHPVFPSLLNLGGTLEVRSNWPIYLQEM-QAAL 180          
BLAST of mRNA_E-fasciculatus_F_contig1524.3701.1 vs. uniprot
Match: A0A095TU16_9GAMM (Methyltransferase n=1 Tax=Alcanivorax nanhaiticus TaxID=1177154 RepID=A0A095TU16_9GAMM)

HSP 1 Score: 136 bits (343), Expect = 4.150e-33
Identity = 80/208 (38.46%), Postives = 103/208 (49.52%), Query Frame = 1
Query:  442 VDFVLEFHRSNSPEEQQQRSSLPVVLDSGCGTGRSSALLARSNPHLPVIGIDRSAVRLAKGGGGAEKEVEAHIHERDSSTRQAGAGQGSDNRVDARSAHGSSGEKKHLPSQRKGNRGNRRREPLPENLLLLRADLVDLWILASRDNAWEIKEHHILYPNPYPKRSQLRSRWHGHSVFPVILSLGGVITLRSNWKAYLDEVCQAVLAIN 1065
             DF  E         Q++   LP++LDSGCGTGRSS  LA +NP + VIG+D+SA RLAK                                                          RR  PLPENLLLLR+D   LW L   +  W++  H ILYPNP+PK + L+ RWHGH V+P +L+LGG + LRSNW  YL+EV +  LA++
Sbjct:   36 ADFDREAFELARRWRQERGEQLPLMLDSGCGTGRSSVHLALANPEVLVIGVDQSADRLAK--------------------------------------------------------ARRRFSPLPENLLLLRSDCAGLWRLMV-EAGWQLARHQILYPNPWPKSAHLKRRWHGHPVWPAVLALGGELELRSNWPVYLEEV-KVALALS 185          
BLAST of mRNA_E-fasciculatus_F_contig1524.3701.1 vs. uniprot
Match: UPI001679E76A (class I SAM-dependent methyltransferase n=1 Tax=Kushneria pakistanensis TaxID=1508770 RepID=UPI001679E76A)

HSP 1 Score: 137 bits (344), Expect = 4.650e-33
Identity = 92/252 (36.51%), Postives = 119/252 (47.22%), Query Frame = 1
Query:  316 YTIDVDVHPDVASVAVKHALQLPRFLHHYPISSHTQAAYRHAVDFVLEFHRSNSPEEQQQRSSLPVVLDSGCGTGRSSALLARSNPHLPVIGIDRSAVRLAKGGGGAEKEVEAHIHERDSSTRQAGAGQGSDNRVDARSAHGSSGEKKHLPSQRKGNRGNRRREPLPENLLLLRADLVDLWILASRDNAWEIKEHHILYPNPYPKRSQLRSRWHGHSVFPVILSLGGVITLRSNWKAYLDEVCQAVLAINGE 1071
            Y+    +HPD+A   V+ AL  P      PI+ HT+AA+  A  F              Q    P++LD+GCGTGRS+  LAR  P   V+GIDRSA RL++                   TR+ GA                                       P+N  LLRADL+D W LA     W+   H I YPNPYPK SQL+ RWH H VFPV+L+LGG + LRSNW+ Y++E   AV  + G+
Sbjct:    9 YSTQAGLHPDLAH-HVQRALDHPW---QRPIADHTRAAFETAQQFY-------------QAHGGPLILDAGCGTGRSTRQLARYYPKACVLGIDRSADRLSR-----------------DYTRELGA--------------------------------------FPDNARLLRADLIDFWRLAHAAG-WQPIRHCIFYPNPYPKASQLKKRWHAHPVFPVLLALGGELELRSNWQIYVEEFACAVDLVTGQ 187          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1524.3701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ6_ECTSI7.200e-22184.21Putative methyltransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A8J5XCC6_DIALT2.390e-3536.78Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A0B4XNW9_9GAMM1.430e-3436.89Methyltransferase n=2 Tax=Alcanivorax TaxID=59753 ... [more]
UPI000DBA2FDA2.900e-3436.33methyltransferase domain-containing protein n=1 Ta... [more]
A0A1H5TDG6_9GAMM3.150e-3436.80tRNA G46 methylase TrmB n=3 Tax=Alcanivorax TaxID=... [more]
A0A3D9DW02_9GAMM4.150e-3438.06tRNA G46 methylase TrmB n=1 Tax=Kushneria indalini... [more]
A0A845MMI4_9GAMM8.220e-3436.33Methyltransferase domain-containing protein n=1 Ta... [more]
UPI001CBC54521.550e-3338.07SAM-dependent methyltransferase n=1 Tax=Alcanivora... [more]
A0A095TU16_9GAMM4.150e-3338.46Methyltransferase n=1 Tax=Alcanivorax nanhaiticus ... [more]
UPI001679E76A4.650e-3336.51class I SAM-dependent methyltransferase n=1 Tax=Ku... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1524contigE-fasciculatus_F_contig1524:7969..9862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score632.5
Seed ortholog evalue1.4e-178
Seed eggNOG ortholog2880.D7FRQ6
EggNOG OGs2DK0Q@1,2S61T@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionputative tRNA methyltransferase
Ec32 orthologEc-00_003460.1
Exons1
Model size1894
Cds size1278
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1524.3701.1prot_E-fasciculatus_F_contig1524.3701.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1524 8200..9477 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928005.4866157-UTR-E-fasciculatus_F_contig1524:7968..81991622928005.4866157-UTR-E-fasciculatus_F_contig1524:7968..8199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1524 7969..8199 +
1695995785.213013-UTR-E-fasciculatus_F_contig1524:7968..81991695995785.213013-UTR-E-fasciculatus_F_contig1524:7968..8199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1524 7969..8199 +
1622928005.5114508-UTR-E-fasciculatus_F_contig1524:9477..98621622928005.5114508-UTR-E-fasciculatus_F_contig1524:9477..9862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1524 9478..9862 +
1695995785.2363806-UTR-E-fasciculatus_F_contig1524:9477..98621695995785.2363806-UTR-E-fasciculatus_F_contig1524:9477..9862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1524 9478..9862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928005.499936-CDS-E-fasciculatus_F_contig1524:8199..94771622928005.499936-CDS-E-fasciculatus_F_contig1524:8199..9477Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 8200..9477 +
1695995785.2254844-CDS-E-fasciculatus_F_contig1524:8199..94771695995785.2254844-CDS-E-fasciculatus_F_contig1524:8199..9477Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1524 8200..9477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1524.3701.1

>prot_E-fasciculatus_F_contig1524.3701.1 ID=prot_E-fasciculatus_F_contig1524.3701.1|Name=mRNA_E-fasciculatus_F_contig1524.3701.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=426bp
MTAGSAQERYGAPTTTTPVSPSTAGTTRYTIDVDVHPDVASVAVKHALQL
PRFLHHYPISSHTQAAYRHAVDFVLEFHRSNSPEEQQQRSSLPVVLDSGC
GTGRSSALLARSNPHLPVIGIDRSAVRLAKGGGGAEKEVEAHIHERDSST
RQAGAGQGSDNRVDARSAHGSSGEKKHLPSQRKGNRGNRRREPLPENLLL
LRADLVDLWILASRDNAWEIKEHHILYPNPYPKRSQLRSRWHGHSVFPVI
LSLGGVITLRSNWKAYLDEVCQAVLAINGEAQTTKGEGDSAADEGGVGDL
ESKRTSSGGKDGDGKVAGMRAAVVSSVVSGRRLTPSTTLSATESDDKAGT
TGGDVSFSIGRALIGDENRAQVPATVAAAAASYAASARAGPFTFVPAVPA
ATNFEGKYAAVGETVYELRLEPKVS*
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mRNA from alignment at E-fasciculatus_F_contig1524:7969..9862+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1524.3701.1 ID=mRNA_E-fasciculatus_F_contig1524.3701.1|Name=mRNA_E-fasciculatus_F_contig1524.3701.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1894bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1524:7969..9862+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAGACGTCATCGCACCGCTGCTGCTGCTGGTCGCCTCGGCGCCGCAGGA CGCGGTAGGTTTCCCCCGGGGGCATCAGTCTTCCGTCGGTGTACGGCGGC ACTTTCGACCTCTAGCAGACAGACTACATGCTTTTGATAGCTCGTTCTCG GCCAGGGGGGGACTTTCTGCAAGACTGCAACATGATCACAAGAAGAGTGG TGTGCGGCTATGGTCTGGCGTCGTGTTGACGATGACCGCAGGCAGCGCGC AAGAGAGATACGGTGCCCCAACAACCACGACGCCAGTATCGCCGTCTACT GCTGGTACGACGAGGTATACCATAGATGTAGACGTGCACCCGGACGTCGC AAGCGTGGCCGTAAAGCATGCCCTCCAGCTCCCCCGGTTTCTGCATCACT ATCCAATCTCGTCTCACACACAGGCCGCATATCGCCATGCGGTCGATTTC GTGCTGGAGTTCCACCGTTCCAACTCACCGGAGGAGCAGCAACAGCGATC TTCGTTGCCTGTAGTTCTGGATTCTGGCTGCGGCACTGGGCGTTCTAGCG CGTTGCTGGCCAGATCTAACCCACACCTTCCGGTGATAGGAATCGACCGG TCTGCGGTTAGACTTGCCAAAGGAGGAGGAGGTGCGGAAAAAGAGGTCGA GGCGCACATTCATGAACGCGACAGCTCTACAAGACAAGCAGGCGCGGGGC AGGGCAGCGACAACCGTGTTGATGCACGAAGCGCTCACGGTAGCTCAGGC GAGAAGAAACACCTCCCTTCACAGAGGAAAGGCAACCGTGGCAACCGACG TAGGGAGCCTCTTCCCGAAAACCTCCTGCTGCTGCGCGCGGACCTTGTGG ACCTGTGGATACTGGCGTCGAGGGATAACGCTTGGGAAATCAAAGAACAC CACATCCTTTACCCCAATCCGTACCCGAAGCGGTCCCAGCTACGATCACG GTGGCACGGCCATTCTGTTTTCCCGGTCATACTCAGCCTTGGTGGGGTGA TAACGCTACGCTCCAACTGGAAGGCGTATCTCGACGAGGTCTGCCAGGCG GTGCTGGCCATCAATGGTGAGGCGCAGACGACGAAGGGCGAGGGAGACTC GGCTGCAGATGAAGGTGGGGTTGGCGATCTGGAGTCGAAGAGGACGAGCA GCGGCGGCAAAGACGGTGACGGGAAAGTGGCTGGAATGCGTGCAGCTGTC GTATCATCGGTGGTGTCGGGACGGCGGCTAACGCCGTCCACGACGCTATC GGCGACCGAAAGCGACGACAAGGCAGGAACAACGGGTGGGGACGTGAGTT TTAGTATCGGTCGAGCTTTGATTGGCGATGAAAACAGAGCCCAAGTTCCG GCTACCGTCGCTGCCGCAGCCGCCTCTTACGCGGCTAGCGCAAGGGCGGG TCCCTTTACCTTTGTTCCAGCAGTGCCTGCTGCAACAAACTTCGAGGGAA AGTATGCCGCAGTCGGTGAGACGGTGTACGAGCTTCGACTAGAGCCGAAA GTATCGTAGGGACTCCAGGATGGCGACTGGGGTTGTGTCATCTCTTGGCA GCAGTGATAAGTATTACTAGGGGGGAGGTGTTGCATGAATCACGGCACCC ACGTGAGGCATGCAGAAGGTATCACTGTAAGCTGTTTCCCAGCCCGCGTC TTCGCCTTTGAAGGTTGGTGTAACCCAGCCGACGCTCCCTCGTCCATATC CTCTTCGCCGGCCGGCAGGTTGCTTCTTCTCCATGTGCATGTCGGCTAGG TTTGTTTTTGCAGGCGCCCCCACGTTGTAGTACGCATCGCATGCAATGCA CATGTCTCCGTAGAGTTGAGATGCTGATGGAGACGTGGTGCTGGGTGATG CGCGTCAAGATTGCGATGGCTGTGTAGACTAAGATGTACCTGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1524:7969..9862+

>mRNA_E-fasciculatus_F_contig1524.3701.1 ID=mRNA_E-fasciculatus_F_contig1524.3701.1|Name=mRNA_E-fasciculatus_F_contig1524.3701.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2556bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1524:7969..9862+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACCGCAGGCAGCGCGCAAGAGAGATACGGTGCCCCAACAACCACGAC
GCCAGTATCGCCGTCTACTGCTGGTACGACGAGGTATACCATAGATGTAG
ACGTGCACCCGGACGTCGCAAGCGTGGCCGTAAAGCATGCCCTCCAGCTC
CCCCGGTTTCTGCATCACTATCCAATCTCGTCTCACACACAGGCCGCATA
TCGCCATGCGGTCGATTTCGTGCTGGAGTTCCACCGTTCCAACTCACCGG
AGGAGCAGCAACAGCGATCTTCGTTGCCTGTAGTTCTGGATTCTGGCTGC
GGCACTGGGCGTTCTAGCGCGTTGCTGGCCAGATCTAACCCACACCTTCC
GGTGATAGGAATCGACCGGTCTGCGGTTAGACTTGCCAAAGGAGGAGGAG
GTGCGGAAAAAGAGGTCGAGGCGCACATTCATGAACGCGACAGCTCTACA
AGACAAGCAGGCGCGGGGCAGGGCAGCGACAACCGTGTTGATGCACGAAG
CGCTCACGGTAGCTCAGGCGAGAAGAAACACCTCCCTTCACAGAGGAAAG
GCAACCGTGGCAACCGACGTAGGGAGCCTCTTCCCGAAAACCTCCTGCTG
CTGCGCGCGGACCTTGTGGACCTGTGGATACTGGCGTCGAGGGATAACGC
TTGGGAAATCAAAGAACACCACATCCTTTACCCCAATCCGTACCCGAAGC
GGTCCCAGCTACGATCACGGTGGCACGGCCATTCTGTTTTCCCGGTCATA
CTCAGCCTTGGTGGGGTGATAACGCTACGCTCCAACTGGAAGGCGTATCT
CGACGAGGTCTGCCAGGCGGTGCTGGCCATCAATGGTGAGGCGCAGACGA
CGAAGGGCGAGGGAGACTCGGCTGCAGATGAAGGTGGGGTTGGCGATCTG
GAGTCGAAGAGGACGAGCAGCGGCGGCAAAGACGGTGACGGGAAAGTGGC
TGGAATGCGTGCAGCTGTCGTATCATCGGTGGTGTCGGGACGGCGGCTAA
CGCCGTCCACGACGCTATCGGCGACCGAAAGCGACGACAAGGCAGGAACA
ACGGGTGGGGACGTGAGTTTTAGTATCGGTCGAGCTTTGATTGGCGATGA
AAACAGAGCCCAAGTTCCGGCTACCGTCGCTGCCGCAGCCGCCTCTTACG
CGGCTAGCGCAAGGGCGGGTCCCTTTACCTTTGTTCCAGCAGTGCCTGCT
GCAACAAACTTCGAGGGAAAGTATGCCGCAGTCGGTGAGACGGTGTACGA
GCTTCGACTAGAGCCGAAAGTATCGTAGATGACCGCAGGCAGCGCGCAAG
AGAGATACGGTGCCCCAACAACCACGACGCCAGTATCGCCGTCTACTGCT
GGTACGACGAGGTATACCATAGATGTAGACGTGCACCCGGACGTCGCAAG
CGTGGCCGTAAAGCATGCCCTCCAGCTCCCCCGGTTTCTGCATCACTATC
CAATCTCGTCTCACACACAGGCCGCATATCGCCATGCGGTCGATTTCGTG
CTGGAGTTCCACCGTTCCAACTCACCGGAGGAGCAGCAACAGCGATCTTC
GTTGCCTGTAGTTCTGGATTCTGGCTGCGGCACTGGGCGTTCTAGCGCGT
TGCTGGCCAGATCTAACCCACACCTTCCGGTGATAGGAATCGACCGGTCT
GCGGTTAGACTTGCCAAAGGAGGAGGAGGTGCGGAAAAAGAGGTCGAGGC
GCACATTCATGAACGCGACAGCTCTACAAGACAAGCAGGCGCGGGGCAGG
GCAGCGACAACCGTGTTGATGCACGAAGCGCTCACGGTAGCTCAGGCGAG
AAGAAACACCTCCCTTCACAGAGGAAAGGCAACCGTGGCAACCGACGTAG
GGAGCCTCTTCCCGAAAACCTCCTGCTGCTGCGCGCGGACCTTGTGGACC
TGTGGATACTGGCGTCGAGGGATAACGCTTGGGAAATCAAAGAACACCAC
ATCCTTTACCCCAATCCGTACCCGAAGCGGTCCCAGCTACGATCACGGTG
GCACGGCCATTCTGTTTTCCCGGTCATACTCAGCCTTGGTGGGGTGATAA
CGCTACGCTCCAACTGGAAGGCGTATCTCGACGAGGTCTGCCAGGCGGTG
CTGGCCATCAATGGTGAGGCGCAGACGACGAAGGGCGAGGGAGACTCGGC
TGCAGATGAAGGTGGGGTTGGCGATCTGGAGTCGAAGAGGACGAGCAGCG
GCGGCAAAGACGGTGACGGGAAAGTGGCTGGAATGCGTGCAGCTGTCGTA
TCATCGGTGGTGTCGGGACGGCGGCTAACGCCGTCCACGACGCTATCGGC
GACCGAAAGCGACGACAAGGCAGGAACAACGGGTGGGGACGTGAGTTTTA
GTATCGGTCGAGCTTTGATTGGCGATGAAAACAGAGCCCAAGTTCCGGCT
ACCGTCGCTGCCGCAGCCGCCTCTTACGCGGCTAGCGCAAGGGCGGGTCC
CTTTACCTTTGTTCCAGCAGTGCCTGCTGCAACAAACTTCGAGGGAAAGT
ATGCCGCAGTCGGTGAGACGGTGTACGAGCTTCGACTAGAGCCGAAAGTA
TCGTAG
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