mRNA_E-fasciculatus_F_contig15223.3694.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15223.3694.1
Unique NamemRNA_E-fasciculatus_F_contig15223.3694.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15223.3694.1 vs. uniprot
Match: A0A6H5KLT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT6_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 4.980e-15
Identity = 81/117 (69.23%), Postives = 86/117 (73.50%), Query Frame = 1 
Query:    1 MRLLRWRCALLIATLAASNLVSPANSQESSVTSAGDDVED---STEXXXXXXPAVAEIDPSDXXXXXXXXPVXXXXXXXXXXXXLAAVEXXXDT--PAADEAVEXXXXSXEEEDAPE 336
            MRLLRWRCALLIATLAASNLVSPANSQ+SS TSAGDDVED   S +      PAVAEID SDXXXXXXXX  XXXXXXXXXX X   VE   DT  P  +E+V+    S  EEDAPE
Sbjct:    1 MRLLRWRCALLIATLAASNLVSPANSQDSSPTSAGDDVEDTGSSLDPAPEPTPAVAEIDASDXXXXXXXX-XXXXXXXXXXXPXXXXVEEEQDTLAPVENESVDTPAPSAAEEDAPE 116
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BLAST of mRNA_E-fasciculatus_F_contig15223.3694.1 vs. uniprot
Match: D8LB64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB64_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.270e-14
Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:    1 MRLLRWRCALLIATLAASNLVSPANSQESSVTSAGDDVED---STEXXXXXXPAVAEIDPSD 177
            MRLLRWRCALLIATLAASN+VSPANSQ+SS+TSAGDDVED   S++  XXXX AVAEIDPSD
Sbjct:    1 MRLLRWRCALLIATLAASNVVSPANSQDSSLTSAGDDVEDTSSSSDPAXXXXXAVAEIDPSD 62
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15223.3694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLT6_9PHAE4.980e-1569.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB64_ECTSI1.270e-1482.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15223contigE-fasciculatus_F_contig15223:2342..2689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue5.7e-13
Seed eggNOG ortholog2880.D8LB64
EggNOG free text desc.sensory perception of sound
EggNOG OGsKOG1216@1,KOG1216@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size348
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928004.7869334-CDS-E-fasciculatus_F_contig15223:2341..26891622928004.7869334-CDS-E-fasciculatus_F_contig15223:2341..2689Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15223 2342..2689 +
1695995784.9205317-CDS-E-fasciculatus_F_contig15223:2341..26891695995784.9205317-CDS-E-fasciculatus_F_contig15223:2341..2689Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15223 2342..2689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15223.3694.1prot_E-fasciculatus_F_contig15223.3694.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15223 2342..2689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15223.3694.1

>prot_E-fasciculatus_F_contig15223.3694.1 ID=prot_E-fasciculatus_F_contig15223.3694.1|Name=mRNA_E-fasciculatus_F_contig15223.3694.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=116bp
MRLLRWRCALLIATLAASNLVSPANSQESSVTSAGDDVEDSTEPAPEPTP
AVAEIDPSDDPPPETPSPVEEDEEEEEEEDELAAVEEEEDTPAADEAVET
PAPSEEEEDAPETPAP
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mRNA from alignment at E-fasciculatus_F_contig15223:2342..2689+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15223.3694.1 ID=mRNA_E-fasciculatus_F_contig15223.3694.1|Name=mRNA_E-fasciculatus_F_contig15223.3694.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=348bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15223:2342..2689+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGTTGCTGAGATGGCGCTGCGCTCTTTTGATCGCCACTCTGGCCGC
CAGCAATCTTGTCAGCCCGGCAAACAGTCAAGAGTCATCTGTCACTTCCG
CCGGCGACGACGTCGAGGACAGCACGGAGCCAGCCCCGGAGCCAACGCCT
GCCGTTGCGGAGATAGACCCTTCCGATGACCCCCCCCCGGAAACCCCGAG
CCCTGTAGAGGAGGATGAGGAGGAGGAGGAGGAGGAGGACGAGCTCGCCG
CAGTCGAAGAGGAGGAAGATACCCCGGCTGCTGATGAGGCTGTCGAGACA
CCCGCACCTTCGGAAGAGGAGGAGGACGCACCCGAGACTCCAGCCCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15223:2342..2689+

>mRNA_E-fasciculatus_F_contig15223.3694.1 ID=mRNA_E-fasciculatus_F_contig15223.3694.1|Name=mRNA_E-fasciculatus_F_contig15223.3694.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15223:2342..2689+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGTTGCTGAGATGGCGCTGCGCTCTTTTGATCGCCACTCTGGCCGC
CAGCAATCTTGTCAGCCCGGCAAACAGTCAAGAGTCATCTGTCACTTCCG
CCGGCGACGACGTCGAGGACAGCACGGAGCCAGCCCCGGAGCCAACGCCT
GCCGTTGCGGAGATAGACCCTTCCGATGACCCCCCCCCGGAAACCCCGAG
CCCTGTAGAGGAGGATGAGGAGGAGGAGGAGGAGGAGGACGAGCTCGCCG
CAGTCGAAGAGGAGGAAGATACCCCGGCTGCTGATGAGGCTGTCGAGACA
CCCGCACCTTCGGAAGAGGAGGAGGACGCACCCGAGACTCCAGCCCCGAT
GCGGTTGCTGAGATGGCGCTGCGCTCTTTTGATCGCCACTCTGGCCGCCA
GCAATCTTGTCAGCCCGGCAAACAGTCAAGAGTCATCTGTCACTTCCGCC
GGCGACGACGTCGAGGACAGCACGGAGCCAGCCCCGGAGCCAACGCCTGC
CGTTGCGGAGATAGACCCTTCCGATGACCCCCCCCCGGAAACCCCGAGCC
CTGTAGAGGAGGATGAGGAGGAGGAGGAGGAGGAGGACGAGCTCGCCGCA
GTCGAAGAGGAGGAAGATACCCCGGCTGCTGATGAGGCTGTCGAGACACC
CGCACCTTCGGAAGAGGAGGAGGACGCACCCGAGACTCCAGCCCCG
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