mRNA_E-fasciculatus_F_contig15217.3690.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15217.3690.1
Unique NamemRNA_E-fasciculatus_F_contig15217.3690.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15217.3690.1 vs. uniprot
Match: D7FTC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC3_ECTSI)

HSP 1 Score: 431 bits (1109), Expect = 7.430e-147
Identity = 211/240 (87.92%), Postives = 225/240 (93.75%), Query Frame = 1 
Query:    1 SQVERYVHLAREALTACFDDGSAETARAFTAMALFQNFMGNEDKFIKYIDFAKSIINSLPPEKVPIDLLDTHLFVKSCDMLEGYSHRVDEEYLKDANGTLESCTMSKESRLIHQKDLCRWLLKADIRLTACFSVDMLDKGAFDEDSSDVGRLRSFNQSAEPPPPGEMSLKFAAELLPEYDLMIHATQTPEVRGGVGELYFHSIMAYANVLQGRLGGAMGGVSRCADIFLTSPGICRLTAW 720
            S VE YVHLAREAL+ CFDDG+AETARAFTAMALFQ+FMGNEDKFIKYIDFAKSIIN+LPPEKVP DLLDTHLFVK+CDMLEGYSH+VDEEY+K A+GTLESC M+KE RLIHQKDLCRWLLKADIRLTACFSVDMLDKGAF+EDSSDVG LRSF+QS EPPPPGEMSLKFAAELLPE DLM+HATQTPEV+GGVGELYFHSIMAYANVLQGR   AM G+ RCADIFLTSPGICRLTAW
Sbjct:  151 SSVEGYVHLAREALSVCFDDGTAETARAFTAMALFQDFMGNEDKFIKYIDFAKSIINALPPEKVPADLLDTHLFVKACDMLEGYSHQVDEEYIKAASGTLESCAMAKEPRLIHQKDLCRWLLKADIRLTACFSVDMLDKGAFNEDSSDVGSLRSFDQSTEPPPPGEMSLKFAAELLPECDLMVHATQTPEVKGGVGELYFHSIMAYANVLQGRQSWAMDGLWRCADIFLTSPGICRLTAW 390
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BLAST of mRNA_E-fasciculatus_F_contig15217.3690.1 vs. uniprot
Match: A0A6H5J7P2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P2_9PHAE)

HSP 1 Score: 392 bits (1008), Expect = 1.370e-129
Identity = 206/300 (68.67%), Postives = 221/300 (73.67%), Query Frame = 1 
Query:    1 SQVERYVHLAREALTACFDDGSAETARAFTAMALFQNFMGNEDKFIKYIDFAKSIINSLPPEKVPIDLLDTHLFVKSCDMLEGYSHRVDEEYLKDANGTLESCTMSKESRLIHQKDLCRWLLKADIRLTACFSVDMLDKGAFDEDSSDVGR------------------------------------------------------------LRSFNQSAEPPPPGEMSLKFAAELLPEYDLMIHATQTPEVRGGVGELYFHSIMAYANVLQGRLGGAMGGVSRCADIFLTSPGICRLTAW 720
            S VE YV LAREAL+ CFDDG+AETARAFTAMALFQ+FMGNEDKFIKYIDFAKSIIN+LP EKVP DLLDTHLFVK+CDMLEGYSHRVDEEY+K A+GT ESCTM+KE RLIHQKDLCRWLLKADIRLTACFSVDMLDKGAF++ S  VGR                                                            LRSF+QS EPPPPGEMSLKFAAELLPE DLM+HATQTPEV+GGVGELYFHSIMAYANVLQGR   A+ G+ RCADIFLTSPGICRLTAW
Sbjct:  138 SSVEGYVRLAREALSVCFDDGTAETARAFTAMALFQDFMGNEDKFIKYIDFAKSIINALPQEKVPADLLDTHLFVKACDMLEGYSHRVDEEYIKAASGTFESCTMAKEPRLIHQKDLCRWLLKADIRLTACFSVDMLDKGAFNDGSRGVGRYARWEGDRCPPGEDGGGPQDVGATRNPGLSAQPHVVYDEGKGGSSPMTGAGAASTPTCFSLRSFDQSTEPPPPGEMSLKFAAELLPECDLMVHATQTPEVKGGVGELYFHSIMAYANVLQGRQSWALDGLWRCADIFLTSPGICRLTAW 437
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15217.3690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTC3_ECTSI7.430e-14787.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7P2_9PHAE1.370e-12968.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15217contigE-fasciculatus_F_contig15217:501..2916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_000810.1
Exons6
Model size723
Cds size723
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15217.3690.1prot_E-fasciculatus_F_contig15217.3690.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15217 501..2916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928004.3396702-CDS-E-fasciculatus_F_contig15217:500..5801622928004.3396702-CDS-E-fasciculatus_F_contig15217:500..580Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15217 501..580 +
1695995784.6913078-CDS-E-fasciculatus_F_contig15217:500..5801695995784.6913078-CDS-E-fasciculatus_F_contig15217:500..580Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15217 501..580 +
1622928004.3569672-CDS-E-fasciculatus_F_contig15217:942..9881622928004.3569672-CDS-E-fasciculatus_F_contig15217:942..988Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15217 943..988 +
1695995784.7008228-CDS-E-fasciculatus_F_contig15217:942..9881695995784.7008228-CDS-E-fasciculatus_F_contig15217:942..988Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15217 943..988 +
1622928004.3728545-CDS-E-fasciculatus_F_contig15217:1277..14721622928004.3728545-CDS-E-fasciculatus_F_contig15217:1277..1472Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15217 1278..1472 +
1695995784.7095003-CDS-E-fasciculatus_F_contig15217:1277..14721695995784.7095003-CDS-E-fasciculatus_F_contig15217:1277..1472Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15217 1278..1472 +
1622928004.385633-CDS-E-fasciculatus_F_contig15217:1781..19121622928004.385633-CDS-E-fasciculatus_F_contig15217:1781..1912Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15217 1782..1912 +
1695995784.718618-CDS-E-fasciculatus_F_contig15217:1781..19121695995784.718618-CDS-E-fasciculatus_F_contig15217:1781..1912Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15217 1782..1912 +
1622928004.3968327-CDS-E-fasciculatus_F_contig15217:2107..22181622928004.3968327-CDS-E-fasciculatus_F_contig15217:2107..2218Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15217 2108..2218 +
1695995784.7343643-CDS-E-fasciculatus_F_contig15217:2107..22181695995784.7343643-CDS-E-fasciculatus_F_contig15217:2107..2218Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15217 2108..2218 +
1622928004.4077044-CDS-E-fasciculatus_F_contig15217:2756..29161622928004.4077044-CDS-E-fasciculatus_F_contig15217:2756..2916Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15217 2757..2916 +
1695995784.7461543-CDS-E-fasciculatus_F_contig15217:2756..29161695995784.7461543-CDS-E-fasciculatus_F_contig15217:2756..2916Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15217 2757..2916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15217.3690.1

>prot_E-fasciculatus_F_contig15217.3690.1 ID=prot_E-fasciculatus_F_contig15217.3690.1|Name=mRNA_E-fasciculatus_F_contig15217.3690.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=241bp
SQVERYVHLAREALTACFDDGSAETARAFTAMALFQNFMGNEDKFIKYID
FAKSIINSLPPEKVPIDLLDTHLFVKSCDMLEGYSHRVDEEYLKDANGTL
ESCTMSKESRLIHQKDLCRWLLKADIRLTACFSVDMLDKGAFDEDSSDVG
RLRSFNQSAEPPPPGEMSLKFAAELLPEYDLMIHATQTPEVRGGVGELYF
HSIMAYANVLQGRLGGAMGGVSRCADIFLTSPGICRLTAW*
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mRNA from alignment at E-fasciculatus_F_contig15217:501..2916+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15217.3690.1 ID=mRNA_E-fasciculatus_F_contig15217.3690.1|Name=mRNA_E-fasciculatus_F_contig15217.3690.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2416bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15217:501..2916+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGCAGGTTGAGAGATACGTGCACCTTGCTCGGGAGGCGTTGACAGCCTG
CTTCGACGACGGCTCGGCGGAGACAGCTAGGTGAGGCGATGGCGTCATGA
TGTAGCATATCTCTCCTGATCCTTGCTGTTGGTGGCCTGTATTCGCGATG
CATTCGCCTTCAAGTGCACGTCTCCTGGGCGTTTGTTGTCGTGCGTTGGC
AATGTTTAGTAGTCACCTTTTCCCCACGCCTCTCCTGTGTCTCTCCTGAT
TCTTGTTGGCGGTGGCGTGTTTGCGCGTCGTGGTCACAATCTTATGGATC
TCCCGGTTTTGTTGTCGGTCGCCTGGTTTTACTCGACGTACGCAAATCGG
CACCTCTCCCGATCCTTGTTGTTGATGGGGTGTGTTCGGAACGTGTTCAT
TCACCTTCTCCTGTGTCTCTCTTGCTCTCTTGACCCTCGCAGGGCGTTTA
CGGCAATGGCTCTCTTTCAGAACTTCATGGGCAACGAGGTGCGGTGCGGT
CCTGCGGGCAGTAAGGCGTTTCTTATGGAGTAGTGCCGTTTGGTTTGTTC
CGTCGAGGGCGTTGGCGACAGCAACCAGTCGTGCCTGCGCGTGGTCTCGC
GTACCCGCTTGTTTTGGGATTTGTTGGCCCCAGGTTTGCTGTTGAAGTGC
TAGAGCGCAACACCTGCTGTGGCCGTTTTGCCACCAATCTCCTTCCCGCT
ATTTTTTTTTCTTCTCACTCTTGCGCGCGGGGACACGCACGGTGTGCCTC
GAAACGCAACCTTTCCTCCGCTTGCAGGACAAGTTCATTAAGTACATCGA
CTTCGCCAAGTCTATCATCAACTCTCTGCCGCCGGAGAAAGTGCCGATAG
ACCTCCTGGACACGCACTTGTTCGTCAAGTCCTGCGACATGCTGGAAGGG
TATAGCCACCGGGTCGACGAGGAATACCTCAAGGATGCCAATGGAACTCT
CGAATCCTGCACGATGTCCAAGGTACAGCATTAGTAGTGGTTCCCTGGAT
GAGGCCGAGTAGCGCCAAGAGATTTGGCCGGCGTTGTACAGGATACCCGA
CACTATTCAAGAGTATGAGACGCGTTGCATGTTCCATCTTTCCGTGTGTC
ACGCGACTTCACCAGCATTTCTGAGAGTGGTCGGTTGTGCAGAAGGGCCC
AGTGCTGTTGCGTGTAGCAAACGTTAGCAGCACTGACGAACGTGCTTCCA
GCTACCGTACACTGACGTCATCCTCGACCCTTGTTGGGGTTCCGTAACGG
CTTCCTCCTTGTATTCGCCACGCGGAGACAGGAATCGAGGCTCATCCATC
AGAAGGACTTGTGCCGCTGGCTGCTCAAGGCCGACATCCGCCTCACCGCT
TGCTTCTCGGTGGACATGCTCGACAAGGGGGCATTCGACGAGGACAGCAG
TGACGTTGGACGGTACGCCCGTTGGGAAGGAGACGGGTCTCCTTTGGGTG
AGGAAGGAGGAGGAGGAGGAGGAGGACCTCAAGATGCCGGGACGACACGC
GACCGCCCGGGTCTGAGCGAGCCACCGCACGTGGTGTACGACGAAGGGAA
GGGTGGGTCTTCGCCGATGACGGATGCCGGCACCTCTAAAACCCCTGCCT
GCTTCAGCCTCAGAAGCTTCAATCAGTCTGCGGAGCCCCCTCCACCGGGA
GAAATGAGCCTCAAGTTCGCGGCGGAGTTGCTGCCGGAATACGACCTGAT
GATCCACGCCACACAGACGTGAGAATGATATGATTGTTGTTTTTGTAGTG
TTCGCGTCAACAGCGTTATTACATGTATGGGGTCATATGCATACAATCAT
ACAACAGCCTGTCGCCCCACGGAACCTAGCGTGGCCCGTTGTCTCGTTGC
CCCCCACGACTTTTGAGGGGTGAGAGATGTACTTTCTTTCGTTGCTGGTT
TGTTGCGTCTGAGTCAACGCTGGTCCCGCGCAAGTGACGCTATTTTTGTA
CGTCACTGTAAAAACGCTAGCCAAGATTTTCGAGAAAGCATTTTTTTTTT
TTTTTGCGGGTGTTCAGAACACCCGCTCTCTTCGCTCATTTTGTTAGGGC
TCACTCATGTTTTTCATCTGATTTTCTTCTTGTCCCTGTGATTAGAAGCT
ACTCGACGGCATGTCTCACTCCCGGGTGCCCAAGGCTCGCTTACAACCCC
GTAGCACCCCGTCTACTTCTTCTGTAAGATAACAAAACGAAATTCGGCCC
AACTTTCGACCAAATATTGTACGTCTCCGGGGTGCGTCGTGTCTCCGGGG
GAAAAGGCCCGAGGTACGAGGTGGCGTCGGCGAGCTGTACTTCCACAGCA
TCATGGCCTACGCCAACGTGCTGCAGGGGCGGCTGGGGGGAGCTATGGGA
GGCGTGTCGCGCTGCGCCGACATCTTCTTGACTAGCCCCGGGATTTGCCG
TCTTACTGCGTGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15217:501..2916+

>mRNA_E-fasciculatus_F_contig15217.3690.1 ID=mRNA_E-fasciculatus_F_contig15217.3690.1|Name=mRNA_E-fasciculatus_F_contig15217.3690.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1446bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15217:501..2916+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGCAGGTTGAGAGATACGTGCACCTTGCTCGGGAGGCGTTGACAGCCTG
CTTCGACGACGGCTCGGCGGAGACAGCTAGTCGCAGGTTGAGAGATACGT
GCACCTTGCTCGGGAGGCGTTGACAGCCTGCTTCGACGACGGCTCGGCGG
AGACAGCTAGGGCGTTTACGGCAATGGCTCTCTTTCAGAACTTCATGGGC
AACGAGGGCGTTTACGGCAATGGCTCTCTTTCAGAACTTCATGGGCAACG
AGGACAAGTTCATTAAGTACATCGACTTCGCCAAGTCTATCATCAACTCT
CTGCCGCCGGAGAAAGTGCCGATAGACCTCCTGGACACGCACTTGTTCGT
CAAGTCCTGCGACATGCTGGAAGGGTATAGCCACCGGGTCGACGAGGAAT
ACCTCAAGGATGCCAATGGAACTCTCGAATCCTGCACGATGTCCAAGGAC
AAGTTCATTAAGTACATCGACTTCGCCAAGTCTATCATCAACTCTCTGCC
GCCGGAGAAAGTGCCGATAGACCTCCTGGACACGCACTTGTTCGTCAAGT
CCTGCGACATGCTGGAAGGGTATAGCCACCGGGTCGACGAGGAATACCTC
AAGGATGCCAATGGAACTCTCGAATCCTGCACGATGTCCAAGGAATCGAG
GCTCATCCATCAGAAGGACTTGTGCCGCTGGCTGCTCAAGGCCGACATCC
GCCTCACCGCTTGCTTCTCGGTGGACATGCTCGACAAGGGGGCATTCGAC
GAGGACAGCAGTGACGTTGGACGGAATCGAGGCTCATCCATCAGAAGGAC
TTGTGCCGCTGGCTGCTCAAGGCCGACATCCGCCTCACCGCTTGCTTCTC
GGTGGACATGCTCGACAAGGGGGCATTCGACGAGGACAGCAGTGACGTTG
GACGCCTCAGAAGCTTCAATCAGTCTGCGGAGCCCCCTCCACCGGGAGAA
ATGAGCCTCAAGTTCGCGGCGGAGTTGCTGCCGGAATACGACCTGATGAT
CCACGCCACACAGACCCTCAGAAGCTTCAATCAGTCTGCGGAGCCCCCTC
CACCGGGAGAAATGAGCCTCAAGTTCGCGGCGGAGTTGCTGCCGGAATAC
GACCTGATGATCCACGCCACACAGACGCCCGAGGTACGAGGTGGCGTCGG
CGAGCTGTACTTCCACAGCATCATGGCCTACGCCAACGTGCTGCAGGGGC
GGCTGGGGGGAGCTATGGGAGGCGTGTCGCGCTGCGCCGACATCTTCTTG
ACTAGCCCCGGGATTTGCCGTCTTACTGCGTGGTGAGCCCGAGGTACGAG
GTGGCGTCGGCGAGCTGTACTTCCACAGCATCATGGCCTACGCCAACGTG
CTGCAGGGGCGGCTGGGGGGAGCTATGGGAGGCGTGTCGCGCTGCGCCGA
CATCTTCTTGACTAGCCCCGGGATTTGCCGTCTTACTGCGTGGTGA
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