mRNA_E-fasciculatus_F_contig15209.3685.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15209.3685.1
Unique NamemRNA_E-fasciculatus_F_contig15209.3685.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15209.3685.1 vs. uniprot
Match: A0A6H5L299_9PHAE (Beta-galactosidase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L299_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 2.480e-63
Identity = 105/113 (92.92%), Postives = 108/113 (95.58%), Query Frame = 1
Query:    1 FDITTEIRVSPGGSLEMTAEVGPLKGVT-RDCLSLARVGVQLQLPPGFGRVEWFGKGPFECYQDRKHGATTGVFSGAVEDQHVPYMVPSENGGKADVRWMALRRGEGGAGLLM 336
            FDI TEIRVSPGG+LEMTAEV PLKGVT RDCLSLARVG+ LQLPPGFGRVEWFGKGPFECYQDRKHGATTGVFSG VEDQHVPYMVPSENGGKADVRWMALR+GEGGAGLLM
Sbjct: 1344 FDIATEIRVSPGGTLEMTAEVEPLKGVTTRDCLSLARVGILLQLPPGFGRVEWFGKGPFECYQDRKHGATTGVFSGTVEDQHVPYMVPSENGGKADVRWMALRKGEGGAGLLM 1456          
BLAST of mRNA_E-fasciculatus_F_contig15209.3685.1 vs. uniprot
Match: A0A3S0BPU6_9BACL (Beta-galactosidase n=1 Tax=Paenibacillus whitsoniae TaxID=2496558 RepID=A0A3S0BPU6_9BACL)

HSP 1 Score: 107 bits (268), Expect = 6.330e-25
Identity = 52/107 (48.60%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 FDITTEIRVSPGGSLEMTAEVGPLKGVTRDCLS-LARVGVQLQLPPGFGRVEWFGKGPFECYQDRKHGATTGVFSGAVEDQHVPYMVPSENGGKADVRWMALRRGEG 318
            FD++  + V   G LE+T E+ P      D L  L R GV+L +P GF R+ WFG+GP ECY DRK     GV+SG+V++Q VPY+ P ENG K+DVRW  L   EG
Sbjct:  831 FDVSVSVVVHASGELELTQELVPRDLGNGDALPPLPRFGVELAMPQGFDRLAWFGRGPHECYVDRKESGKLGVYSGSVQEQFVPYIKPQENGNKSDVRWAELTNAEG 937          
BLAST of mRNA_E-fasciculatus_F_contig15209.3685.1 vs. uniprot
Match: UPI0010C143A6 (DUF4981 domain-containing protein n=1 Tax=Paenibacillus sp. SY21-1 TaxID=2562315 RepID=UPI0010C143A6)

HSP 1 Score: 103 bits (258), Expect = 1.420e-23
Identity = 51/110 (46.36%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 FDITTEIRVSPGGSLEMTAEVGPLKGVTRDCLSLARVGVQLQLPPGFGRVEWFGKGPFECYQDRKHGATTGVFSGAVEDQHVPYMVPSENGGKADVRWMALRRGEGGAGL 330
            F I T   +   GSL++   + P +G+      L R G++L +P  F R  WFG+GP ECY DRKH    G+FSG V++Q+VPY+ P ENG KADVRW  +  G GGAG+
Sbjct:  878 FRIRTVYVIHADGSLQIELSLEPREGLP----PLPRFGLELSMPDEFDRFAWFGRGPHECYADRKHSGKLGIFSGTVDEQYVPYIKPQENGSKADVRWATVMNG-GGAGI 982          
BLAST of mRNA_E-fasciculatus_F_contig15209.3685.1 vs. uniprot
Match: UPI00098E7475 (uncharacterized protein LOC109840411 isoform X1 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E7475)

HSP 1 Score: 102 bits (255), Expect = 3.600e-23
Identity = 50/83 (60.24%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   85 RDCLSLARVGVQLQLPPGFGRVEWFGKGPFECYQDRKHGATTGVFSGAVEDQHVPYMVPSENGGKADVRWMALRRGEGGAGLL 333
            RD   L RVGV+L L      V W+GKGPFECY DRK  A  GV+   VED HVPY+VPSE GG+ADVRW+A R G GG GL 
Sbjct:  914 RDLPPLPRVGVELHLDKSLNNVTWYGKGPFECYPDRKEAAHVGVYESNVEDMHVPYIVPSECGGRADVRWVAFRNG-GGHGLF 995          
BLAST of mRNA_E-fasciculatus_F_contig15209.3685.1 vs. uniprot
Match: A0A5P1ENB0_ASPOF (Beta-galactosidase n=3 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1ENB0_ASPOF)

HSP 1 Score: 102 bits (255), Expect = 3.670e-23
Identity = 50/83 (60.24%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   85 RDCLSLARVGVQLQLPPGFGRVEWFGKGPFECYQDRKHGATTGVFSGAVEDQHVPYMVPSENGGKADVRWMALRRGEGGAGLL 333
            RD   L RVGV+L L      V W+GKGPFECY DRK  A  GV+   VED HVPY+VPSE GG+ADVRW+A R G GG GL 
Sbjct:  922 RDLPPLPRVGVELHLDKSLNNVTWYGKGPFECYPDRKEAAHVGVYESNVEDMHVPYIVPSECGGRADVRWVAFRNG-GGHGLF 1003          
BLAST of mRNA_E-fasciculatus_F_contig15209.3685.1 vs. uniprot
Match: A0A0A9PK18_ARUDO (Beta-galactosidase n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9PK18_ARUDO)

HSP 1 Score: 94.7 bits (234), Expect = 5.150e-22
Identity = 47/99 (47.47%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   22 RVSPGGSLEMTAEVGPLKGVTRDCLSLARVGVQLQLPPGFGRVEWFGKGPFECYQDRKHGATTGVFSGAVEDQHVPYMVPSENGGKADVRWMALRRGEG 318
            R+   G + +  EV P      D   L RVGV          V W+G+GPFECY DRK  A  GV+  +VED HVPY+ P E GG+ADVRWMALR  +G
Sbjct:    4 RIYESGDVILEYEVNP----KADLPPLPRVGVVFNAEKSLSHVTWYGRGPFECYPDRKAAAHVGVYESSVEDLHVPYIAPGECGGRADVRWMALRNADG 98          
BLAST of mRNA_E-fasciculatus_F_contig15209.3685.1 vs. uniprot
Match: UPI0009BC57FB (DUF4981 domain-containing protein n=2 Tax=Cohnella TaxID=329857 RepID=UPI0009BC57FB)

HSP 1 Score: 99.4 bits (246), Expect = 5.900e-22
Identity = 49/106 (46.23%), Postives = 62/106 (58.49%), Query Frame = 1
Query:    1 FDITTEIRVSPGGSLEMTAEVGPLKGVTRDCLSLARVGVQLQLPPGFGRVEWFGKGPFECYQDRKHGATTGVFSGAVEDQHVPYMVPSENGGKADVRWMALRRGEG 318
            F   T   V  GG L + A V P +G+      L R G +L +P GF R++WFG+GP ECY DRK     GV+ G V++Q VPY+ P ENG KADVRW A+    G
Sbjct:  866 FRARTTAAVRAGGELLLEALVEPREGLP----PLPRFGFELSMPAGFERLDWFGRGPHECYADRKESGKLGVYGGTVQEQFVPYVKPQENGNKADVRWAAVTNAAG 967          
BLAST of mRNA_E-fasciculatus_F_contig15209.3685.1 vs. uniprot
Match: A0A7C5THN8_9ARCH (Beta-galactosidase n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A7C5THN8_9ARCH)

HSP 1 Score: 99.4 bits (246), Expect = 5.900e-22
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 FDITTEIRVSPGGSLEMTAEVGPLKGVTRDCLSLARVGVQLQLPPGFGRVEWFGKGPFECYQDRKHGATTGVFSGAVEDQHVPYMVPSENGGKADVRWMAL 303
            F    + R+   G + +   V P KG+      L RVG+QL +P GF ++ WFG+GP E Y DRK GA  G++S  V++QHVPY+ P ENG K+DVRW+AL
Sbjct:  890 FTCIYDYRIYGSGDIIVEVNVNPKKGLPPH---LPRVGIQLTIPRGFEKILWFGRGPHENYCDRKEGALIGIYSSTVDEQHVPYIRPQENGNKSDVRWIAL 987          
BLAST of mRNA_E-fasciculatus_F_contig15209.3685.1 vs. uniprot
Match: A0A231RGP3_9BACL (Beta-galactosidase n=1 Tax=Cohnella sp. CIP 111063 TaxID=1955714 RepID=A0A231RGP3_9BACL)

HSP 1 Score: 98.6 bits (244), Expect = 1.100e-21
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 1
Query:    1 FDITTEIRVSPGGSLEMTAEVGPLKGVTRDCLSLARVGVQLQLPPGFGRVEWFGKGPFECYQDRKHGATTGVFSGAVEDQHVPYMVPSENGGKADVRWMALRRGEG 318
            F   T   VS GG L + A + P +G+      L R G +L +P GF R++WFG+GP ECY DRK     G++ G V++Q VPY+ P ENG KAD+RW  +    G
Sbjct:  902 FRARTIAVVSAGGELRLEARIEPREGLP----PLPRFGFELTMPSGFERMDWFGRGPHECYADRKESGKLGLYGGTVQEQFVPYIKPQENGNKADIRWAGVTNASG 1003          
BLAST of mRNA_E-fasciculatus_F_contig15209.3685.1 vs. uniprot
Match: A0A1V5RRV8_9CHLR (Beta-galactosidase n=1 Tax=Chloroflexi bacterium ADurb.Bin325 TaxID=1852859 RepID=A0A1V5RRV8_9CHLR)

HSP 1 Score: 98.6 bits (244), Expect = 1.100e-21
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   37 GSLEMTAEVGPLKGVTRDCLSLARVGVQLQLPPGFGRVEWFGKGPFECYQDRKHGATTGVFSGAVEDQHVPYMVPSENGGKADVRWMALRRGEGGAGLL 333
            G + +   V P +G+ +    L R+GV+L+LPP +    W+G+GP E Y DRK GA  GV+SG+V++Q+VPY++P ENG K DVRW A    +G AGLL
Sbjct:  967 GDVLLHLHVAPSEGLPQ----LPRIGVELELPPAYDTFTWYGRGPHEAYADRKEGARIGVYSGSVDEQYVPYIMPEENGNKIDVRWAAFTDADG-AGLL 1060          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15209.3685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L299_9PHAE2.480e-6392.92Beta-galactosidase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A3S0BPU6_9BACL6.330e-2548.60Beta-galactosidase n=1 Tax=Paenibacillus whitsonia... [more]
UPI0010C143A61.420e-2346.36DUF4981 domain-containing protein n=1 Tax=Paenibac... [more]
UPI00098E74753.600e-2360.24uncharacterized protein LOC109840411 isoform X1 n=... [more]
A0A5P1ENB0_ASPOF3.670e-2360.24Beta-galactosidase n=3 Tax=Asparagus officinalis T... [more]
A0A0A9PK18_ARUDO5.150e-2247.47Beta-galactosidase n=1 Tax=Arundo donax TaxID=3570... [more]
UPI0009BC57FB5.900e-2246.23DUF4981 domain-containing protein n=2 Tax=Cohnella... [more]
A0A7C5THN8_9ARCH5.900e-2246.53Beta-galactosidase n=1 Tax=Candidatus Bathyarchaeo... [more]
A0A231RGP3_9BACL1.100e-2143.40Beta-galactosidase n=1 Tax=Cohnella sp. CIP 111063... [more]
A0A1V5RRV8_9CHLR1.100e-2147.47Beta-galactosidase n=1 Tax=Chloroflexi bacterium A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15209contigE-fasciculatus_F_contig15209:67..1031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.7
Seed ortholog evalue3.4e-55
Seed eggNOG ortholog2880.D7FWP3
KEGG rclassRC00049,RC00452
KEGG koko:K01190
KEGG ReactionR01105,R01678,R03355,R04783,R06114
KEGG Pathwayko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100
EggNOG free text desc.beta-glucuronidase activity
EggNOG OGsCOG3250@1,KOG2024@2759
EC3.2.1.23
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBeta-galactosidase, family GH2
Ec32 orthologEc-06_001410.1
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928002.7359617-CDS-E-fasciculatus_F_contig15209:66..2611622928002.7359617-CDS-E-fasciculatus_F_contig15209:66..261Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15209 67..261 +
1695995784.2251823-CDS-E-fasciculatus_F_contig15209:66..2611695995784.2251823-CDS-E-fasciculatus_F_contig15209:66..261Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15209 67..261 +
1622928002.748213-CDS-E-fasciculatus_F_contig15209:890..10311622928002.748213-CDS-E-fasciculatus_F_contig15209:890..1031Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15209 891..1031 +
1695995784.2382658-CDS-E-fasciculatus_F_contig15209:890..10311695995784.2382658-CDS-E-fasciculatus_F_contig15209:890..1031Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15209 891..1031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15209.3685.1prot_E-fasciculatus_F_contig15209.3685.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15209 67..1031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15209.3685.1

>prot_E-fasciculatus_F_contig15209.3685.1 ID=prot_E-fasciculatus_F_contig15209.3685.1|Name=mRNA_E-fasciculatus_F_contig15209.3685.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=112bp
FDITTEIRVSPGGSLEMTAEVGPLKGVTRDCLSLARVGVQLQLPPGFGRV
EWFGKGPFECYQDRKHGATTGVFSGAVEDQHVPYMVPSENGGKADVRWMA
LRRGEGGAGLLM
back to top

mRNA from alignment at E-fasciculatus_F_contig15209:67..1031+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15209.3685.1 ID=mRNA_E-fasciculatus_F_contig15209.3685.1|Name=mRNA_E-fasciculatus_F_contig15209.3685.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=965bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15209:67..1031+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCGATATCACCACCGAGATACGAGTGTCCCCCGGAGGGAGCTTGGAGAT GACCGCCGAGGTGGGGCCCCTCAAGGGGGTGACGCGAGATTGCTTGAGCC TGGCCAGGGTAGGTGTCCAGCTCCAGCTACCTCCTGGGTTTGGGCGAGTG GAGTGGTTCGGCAAGGGGCCGTTCGAGTGTTACCAGGATCGCAAGGTGAT GACTCTCGTCTTGCTCTCGTCTGTGGTCGACGAGACTTTCCAGCTGCCTC CAGGGAACGTATTTTTTTGTGCGGGGGAATTGGCTCCTCTTTTGGCGCGA TGAGGCTGTGTCTTTGTGCGGTGCTGCATTGGTTGTTTCTCCGTTTCATG TGAAAAGGTCGGCGGTTTCGTATCATTTTCGGGTCTCATGCTTCCAAAAT CCTCCGTATGTTGATTGTTTTCGGAGATGCGGAAGAAGACGTGTTTTGCC CCCATGCTCTTTGGCGAGGAGTGACCACCCAAGACCTTCGCCTTTCGCAC ACACGAGGGTCGCAGCCGGCCCCCAACCAGCTGCGCTTTTGATCTGTCCA TGCGCATTTTTTTCTCTTTTGGCCTTGTGTGTGGGCGAGTGGTCCTCTGC TGTAGTCACACCTTACCTACCTGTTTCTCCTCTTTCTGAACATTTACGTC TCCCGCGTGTGCTCTAGTCGGCCCTTCTTGGCGTCCGCATTTGCGTGGCG TGCTTTACTCCATGGTCGATCCGAGAATCCCTCTGCCTGTTATCGGCGAA TTCTCGGGGGTGCTCAAGGGCCTGAACCGAACCGAAGCCCCTTCTTTCCG CCCTAACACGTGCCTTCCTCTCAGCACGGCGCTACGACGGGTGTTTTCTC CGGAGCCGTGGAAGATCAGCACGTGCCGTACATGGTGCCCAGCGAAAACG GCGGCAAGGCCGACGTCCGGTGGATGGCACTCCGCAGGGGGGAAGGGGGG GCTGGGTTGCTCATG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15209:67..1031+

>mRNA_E-fasciculatus_F_contig15209.3685.1 ID=mRNA_E-fasciculatus_F_contig15209.3685.1|Name=mRNA_E-fasciculatus_F_contig15209.3685.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=672bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15209:67..1031+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCGATATCACCACCGAGATACGAGTGTCCCCCGGAGGGAGCTTGGAGAT
GACCGCCGAGGTGGGGCCCCTCAAGGGGGTGACGCGAGATTGCTTGAGCC
TGGCCAGGGTAGGTGTCCAGCTCCAGCTACCTCCTGGGTTTGGGCGAGTG
GAGTGGTTCGGCAAGGGGCCGTTCGAGTGTTACCAGGATCGCAAGTTCGA
TATCACCACCGAGATACGAGTGTCCCCCGGAGGGAGCTTGGAGATGACCG
CCGAGGTGGGGCCCCTCAAGGGGGTGACGCGAGATTGCTTGAGCCTGGCC
AGGGTAGGTGTCCAGCTCCAGCTACCTCCTGGGTTTGGGCGAGTGGAGTG
GTTCGGCAAGGGGCCGTTCGAGTGTTACCAGGATCGCAAGCACGGCGCTA
CGACGGGTGTTTTCTCCGGAGCCGTGGAAGATCAGCACGTGCCGTACATG
GTGCCCAGCGAAAACGGCGGCAAGGCCGACGTCCGGTGGATGGCACTCCG
CAGGGGGGAAGGGGGGGCTGGGTTGCTCATGCACGGCGCTACGACGGGTG
TTTTCTCCGGAGCCGTGGAAGATCAGCACGTGCCGTACATGGTGCCCAGC
GAAAACGGCGGCAAGGCCGACGTCCGGTGGATGGCACTCCGCAGGGGGGA
AGGGGGGGCTGGGTTGCTCATG
back to top