mRNA_E-fasciculatus_F_contig15207.3684.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15207.3684.1
Unique NamemRNA_E-fasciculatus_F_contig15207.3684.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15207.3684.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 2.440e-71
Identity = 121/123 (98.37%), Postives = 123/123 (100.00%), Query Frame = 1 
Query:    1 KLGVILRLARERWESPPPPVDANLSALTEHLLGILGAIDEEGWFAEPVSESAAPGYISAILRPMDLGTVRGRLEGRRYRDVAELQDDLLLVVANCFTYNSPGTVFEAAATSLAEQASGAYAQA 369
            KLGVILRLARERW+SPPPPVDANLSALTEHLLGILGAIDEEGWFAEPVSESAAPGYISAILRPMDLGTVRGRLEGRRYRDVAELQDDLLLVVANCFTYNSPGT+FEAAATSLAEQASGAYAQA
Sbjct: 1855 KLGVILRLARERWQSPPPPVDANLSALTEHLLGILGAIDEEGWFAEPVSESAAPGYISAILRPMDLGTVRGRLEGRRYRDVAELQDDLLLVVANCFTYNSPGTLFEAAATSLAEQASGAYAQA 1977
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BLAST of mRNA_E-fasciculatus_F_contig15207.3684.1 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 1.320e-50
Identity = 91/94 (96.81%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:   88 HLLGILGAIDEEGWFAEPVSESAAPGYISAILRPMDLGTVRGRLEGRRYRDVAELQDDLLLVVANCFTYNSPGTVFEAAATSLAEQASGAYAQA 369
            HLLGILGAIDEEGWFAEPVSE+AAPGYISAILRPMDLGTVRGRLEGRRYRDV+ELQDDLLLVVANCFTYNSPGT+FEAAATSLAEQASGAYAQA
Sbjct: 1856 HLLGILGAIDEEGWFAEPVSEAAAPGYISAILRPMDLGTVRGRLEGRRYRDVSELQDDLLLVVANCFTYNSPGTMFEAAATSLAEQASGAYAQA 1949
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BLAST of mRNA_E-fasciculatus_F_contig15207.3684.1 vs. uniprot
Match: A0A0N4UWE3_ENTVE (Bromo domain-containing protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4UWE3_ENTVE)

HSP 1 Score: 76.6 bits (187), Expect = 7.700e-14
Identity = 44/112 (39.29%), Postives = 60/112 (53.57%), Query Frame = 1 
Query:   28 RERWESPPPPVDAN---------LSALTEHLLGILGAIDEEGWFAEPVSESAAPGYISAILRPMDLGTVRGRLEGRRYRDVAELQDDLLLVVANCFTYNSPGTVFEAAATSL 336
            +E+  SP PP  +          +  L +HLL  L A D E +FA PV+++ AP Y   I  PMD  T+R ++EG  Y D+A  + DL LVV N   YN P T++  AA  L
Sbjct:  124 KEKTLSPSPPPASKPPMVRRYSPMQLLCDHLLRKLHAKDPEEYFAFPVTQAIAPDYHLMIKEPMDFSTMRMKIEGNEYPDLAAFKHDLDLVVNNALEYNQPHTIYNVAAQKL 235
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BLAST of mRNA_E-fasciculatus_F_contig15207.3684.1 vs. uniprot
Match: A0A1S3I4P7_LINUN (BRCA2-interacting transcriptional repressor EMSY n=3 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I4P7_LINUN)

HSP 1 Score: 75.1 bits (183), Expect = 2.820e-13
Identity = 40/113 (35.40%), Postives = 59/113 (52.21%), Query Frame = 1 
Query:   16 LRLARERWESPPPPVDA---NLSALTEHLLGIL-------------GAIDEEGWFAEPVSESAAPGYISAILRPMDLGTVRGRLEGRRYRDVAELQDDLLLVVANCFTYNSPG 306
            +R ++ + ++P  P D+    +   T   LG+L             G ++   WF  PV E+ APGY   I  PMD  T+R +LE   Y + +EL DD+LLV  NC++YN PG
Sbjct: 1026 VRASKRKRKAPLAPDDSPPHTVGGWTRVALGLLQRVSRFRGANREKGEVNAASWFTRPVDEAEAPGYHDVIKNPMDFSTIRRKLEVGMYANFSELNDDMLLVRDNCYSYNPPG 1138
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BLAST of mRNA_E-fasciculatus_F_contig15207.3684.1 vs. uniprot
Match: UPI0002659783 (bromodomain-containing protein 7 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002659783)

HSP 1 Score: 73.6 bits (179), Expect = 9.580e-13
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:   40 ESPPPPVDANLSALTEHLLGILGAIDEEGWFAEPVSESAAPGYISAILRPMDLGTVRGRLEGRRYRDVAELQDDLLLVVANCFTYNSPGTVF 315
            E PPP VD +L  L   LL I+   D   +FA PVS+  APGY S I  PMDL T+R +LE   Y+ + + + D+ L+  N   YN+  T++
Sbjct:  234 EKPPPTVDPSLQKLLGVLLNIVQERDRLEFFAWPVSDVIAPGYSSIIQSPMDLSTMRRKLEHLEYKSLTDFRADVKLICDNACQYNAADTIY 325
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BLAST of mRNA_E-fasciculatus_F_contig15207.3684.1 vs. uniprot
Match: A0A834CFC5_ORYME (Bromodomain and PHD finger-containing protein 3 n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A834CFC5_ORYME)

HSP 1 Score: 72.4 bits (176), Expect = 2.460e-12
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:   19 RLARERWESPPPPVDANLS---ALTEHLLGILGAIDEEGWFAEPVSESAAPGYISAILRPMDLGTVRGRLEGRRYRDVAELQDDLLLVVANCFTYNSPGTVFEAAATSLAE 342
            RL RE+ +     ++  L+    L  + L  L   D    F++PV+ S  P Y+  I +PMDL T+R +LEG  Y  VA+L+ D  L+++NC  YNS  T+F  AA  L E
Sbjct:  592 RLKREQMKIQQAVLELKLTPALTLLRYTLDQLEEKDTAKIFSQPVNLSEVPDYLEFISQPMDLSTMRTKLEGHAYCSVADLEKDFNLMISNCLKYNSKDTMFHKAALQLRE 702
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BLAST of mRNA_E-fasciculatus_F_contig15207.3684.1 vs. uniprot
Match: A0A3B3CRW2_ORYME (Bromodomain and PHD finger-containing protein 3-like n=2 Tax=Oryzias TaxID=8089 RepID=A0A3B3CRW2_ORYME)

HSP 1 Score: 72.4 bits (176), Expect = 2.470e-12
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:   19 RLARERWESPPPPVDANLS---ALTEHLLGILGAIDEEGWFAEPVSESAAPGYISAILRPMDLGTVRGRLEGRRYRDVAELQDDLLLVVANCFTYNSPGTVFEAAATSLAE 342
            RL RE+ +     ++  L+    L  + L  L   D    F++PV+ S  P Y+  I +PMDL T+R +LEG  Y  VA+L+ D  L+++NC  YNS  T+F  AA  L E
Sbjct:  570 RLKREQMKIQQAVLELKLTPALTLLRYTLDQLEEKDTAKIFSQPVNLSEVPDYLEFISQPMDLSTMRTKLEGHAYCSVADLEKDFNLMISNCLKYNSKDTMFHKAALQLRE 680
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BLAST of mRNA_E-fasciculatus_F_contig15207.3684.1 vs. uniprot
Match: UPI000CF83F51 (bromodomain and PHD finger-containing protein 3 isoform X3 n=1 Tax=Oryzias melastigma TaxID=30732 RepID=UPI000CF83F51)

HSP 1 Score: 72.4 bits (176), Expect = 2.480e-12
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:   19 RLARERWESPPPPVDANLS---ALTEHLLGILGAIDEEGWFAEPVSESAAPGYISAILRPMDLGTVRGRLEGRRYRDVAELQDDLLLVVANCFTYNSPGTVFEAAATSLAE 342
            RL RE+ +     ++  L+    L  + L  L   D    F++PV+ S  P Y+  I +PMDL T+R +LEG  Y  VA+L+ D  L+++NC  YNS  T+F  AA  L E
Sbjct:  592 RLKREQMKIQQAVLELKLTPALTLLRYTLDQLEEKDTAKIFSQPVNLSEVPDYLEFISQPMDLSTMRTKLEGHAYCSVADLEKDFNLMISNCLKYNSKDTMFHKAALQLRE 702
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BLAST of mRNA_E-fasciculatus_F_contig15207.3684.1 vs. uniprot
Match: UPI000CF81C32 (bromodomain and PHD finger-containing protein 3 isoform X2 n=1 Tax=Oryzias melastigma TaxID=30732 RepID=UPI000CF81C32)

HSP 1 Score: 72.4 bits (176), Expect = 2.480e-12
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:   19 RLARERWESPPPPVDANLS---ALTEHLLGILGAIDEEGWFAEPVSESAAPGYISAILRPMDLGTVRGRLEGRRYRDVAELQDDLLLVVANCFTYNSPGTVFEAAATSLAE 342
            RL RE+ +     ++  L+    L  + L  L   D    F++PV+ S  P Y+  I +PMDL T+R +LEG  Y  VA+L+ D  L+++NC  YNS  T+F  AA  L E
Sbjct:  592 RLKREQMKIQQAVLELKLTPALTLLRYTLDQLEEKDTAKIFSQPVNLSEVPDYLEFISQPMDLSTMRTKLEGHAYCSVADLEKDFNLMISNCLKYNSKDTMFHKAALQLRE 702
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BLAST of mRNA_E-fasciculatus_F_contig15207.3684.1 vs. uniprot
Match: A0A3B3DZH4_ORYME (Bromodomain and PHD finger-containing protein 3-like n=2 Tax=Oryzias melastigma TaxID=30732 RepID=A0A3B3DZH4_ORYME)

HSP 1 Score: 72.4 bits (176), Expect = 2.480e-12
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:   19 RLARERWESPPPPVDANLS---ALTEHLLGILGAIDEEGWFAEPVSESAAPGYISAILRPMDLGTVRGRLEGRRYRDVAELQDDLLLVVANCFTYNSPGTVFEAAATSLAE 342
            RL RE+ +     ++  L+    L  + L  L   D    F++PV+ S  P Y+  I +PMDL T+R +LEG  Y  VA+L+ D  L+++NC  YNS  T+F  AA  L E
Sbjct:  592 RLKREQMKIQQAVLELKLTPALTLLRYTLDQLEEKDTAKIFSQPVNLSEVPDYLEFISQPMDLSTMRTKLEGHAYCSVADLEKDFNLMISNCLKYNSKDTMFHKAALQLRE 702
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15207.3684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTA2_9PHAE2.440e-7198.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEP1_ECTSI1.320e-5096.81WD-repeat protein, putative n=1 Tax=Ectocarpus sil... [more]
A0A0N4UWE3_ENTVE7.700e-1439.29Bromo domain-containing protein n=1 Tax=Enterobius... [more]
A0A1S3I4P7_LINUN2.820e-1335.40BRCA2-interacting transcriptional repressor EMSY n... [more]
UPI00026597839.580e-1341.30bromodomain-containing protein 7 n=1 Tax=Galendrom... [more]
A0A834CFC5_ORYME2.460e-1237.84Bromodomain and PHD finger-containing protein 3 n=... [more]
A0A3B3CRW2_ORYME2.470e-1237.84Bromodomain and PHD finger-containing protein 3-li... [more]
UPI000CF83F512.480e-1237.84bromodomain and PHD finger-containing protein 3 is... [more]
UPI000CF81C322.480e-1237.84bromodomain and PHD finger-containing protein 3 is... [more]
A0A3B3DZH4_ORYME2.480e-1237.84Bromodomain and PHD finger-containing protein 3-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15207contigE-fasciculatus_F_contig15207:1592..1960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.4
Seed ortholog evalue2.5e-43
Seed eggNOG ortholog2880.D8LEP1
KEGG koko:K02606,ko:K11797,ko:K11798
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.regulation of cell shape
EggNOG OGsCOG2319@1,COG5141@1,KOG0644@2759,KOG0955@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928002.6457028-CDS-E-fasciculatus_F_contig15207:1591..19601622928002.6457028-CDS-E-fasciculatus_F_contig15207:1591..1960Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15207 1592..1960 -
1695995784.2086914-CDS-E-fasciculatus_F_contig15207:1591..19601695995784.2086914-CDS-E-fasciculatus_F_contig15207:1591..1960Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15207 1592..1960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15207.3684.1prot_E-fasciculatus_F_contig15207.3684.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15207 1592..1960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15207.3684.1

>prot_E-fasciculatus_F_contig15207.3684.1 ID=prot_E-fasciculatus_F_contig15207.3684.1|Name=mRNA_E-fasciculatus_F_contig15207.3684.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=123bp
KLGVILRLARERWESPPPPVDANLSALTEHLLGILGAIDEEGWFAEPVSE
SAAPGYISAILRPMDLGTVRGRLEGRRYRDVAELQDDLLLVVANCFTYNS
PGTVFEAAATSLAEQASGAYAQA
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mRNA from alignment at E-fasciculatus_F_contig15207:1592..1960-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15207.3684.1 ID=mRNA_E-fasciculatus_F_contig15207.3684.1|Name=mRNA_E-fasciculatus_F_contig15207.3684.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=369bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15207:1592..1960- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGCTGGGCGTGATCCTGCGGCTGGCGCGGGAGCGGTGGGAGTCCCCGCC
CCCTCCGGTGGACGCCAACCTCTCGGCCCTGACGGAGCACCTGCTGGGCA
TCCTCGGGGCCATCGACGAGGAGGGCTGGTTCGCCGAGCCGGTGTCTGAG
TCCGCGGCCCCCGGCTACATTTCGGCGATCCTGCGGCCGATGGACCTGGG
CACCGTGAGGGGACGGCTAGAGGGACGCCGGTACCGCGACGTCGCGGAGC
TGCAGGACGACCTGCTGCTGGTGGTGGCCAACTGCTTCACCTACAACTCC
CCGGGCACGGTGTTCGAGGCTGCTGCCACCAGCCTCGCGGAACAAGCGAG
CGGGGCTTACGCCCAAGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15207:1592..1960-

>mRNA_E-fasciculatus_F_contig15207.3684.1 ID=mRNA_E-fasciculatus_F_contig15207.3684.1|Name=mRNA_E-fasciculatus_F_contig15207.3684.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15207:1592..1960- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGCTGGGCGTGATCCTGCGGCTGGCGCGGGAGCGGTGGGAGTCCCCGCC
CCCTCCGGTGGACGCCAACCTCTCGGCCCTGACGGAGCACCTGCTGGGCA
TCCTCGGGGCCATCGACGAGGAGGGCTGGTTCGCCGAGCCGGTGTCTGAG
TCCGCGGCCCCCGGCTACATTTCGGCGATCCTGCGGCCGATGGACCTGGG
CACCGTGAGGGGACGGCTAGAGGGACGCCGGTACCGCGACGTCGCGGAGC
TGCAGGACGACCTGCTGCTGGTGGTGGCCAACTGCTTCACCTACAACTCC
CCGGGCACGGTGTTCGAGGCTGCTGCCACCAGCCTCGCGGAACAAGCGAG
CGGGGCTTACGCCCAAGCCAAGCTGGGCGTGATCCTGCGGCTGGCGCGGG
AGCGGTGGGAGTCCCCGCCCCCTCCGGTGGACGCCAACCTCTCGGCCCTG
ACGGAGCACCTGCTGGGCATCCTCGGGGCCATCGACGAGGAGGGCTGGTT
CGCCGAGCCGGTGTCTGAGTCCGCGGCCCCCGGCTACATTTCGGCGATCC
TGCGGCCGATGGACCTGGGCACCGTGAGGGGACGGCTAGAGGGACGCCGG
TACCGCGACGTCGCGGAGCTGCAGGACGACCTGCTGCTGGTGGTGGCCAA
CTGCTTCACCTACAACTCCCCGGGCACGGTGTTCGAGGCTGCTGCCACCA
GCCTCGCGGAACAAGCGAGCGGGGCTTACGCCCAAGCC
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