mRNA_E-fasciculatus_F_contig15207.3683.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15207.3683.1
Unique NamemRNA_E-fasciculatus_F_contig15207.3683.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15207.3683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15207contigE-fasciculatus_F_contig15207:116..984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size869
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15207.3683.1prot_E-fasciculatus_F_contig15207.3683.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15207 385..840 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928002.381658-UTR-E-fasciculatus_F_contig15207:115..3841622928002.381658-UTR-E-fasciculatus_F_contig15207:115..384Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15207 116..384 +
1695995784.1698992-UTR-E-fasciculatus_F_contig15207:115..3841695995784.1698992-UTR-E-fasciculatus_F_contig15207:115..384Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15207 116..384 +
1622928002.4415414-UTR-E-fasciculatus_F_contig15207:840..9841622928002.4415414-UTR-E-fasciculatus_F_contig15207:840..984Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15207 841..984 +
1695995784.1952183-UTR-E-fasciculatus_F_contig15207:840..9841695995784.1952183-UTR-E-fasciculatus_F_contig15207:840..984Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15207 841..984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928002.4291284-CDS-E-fasciculatus_F_contig15207:384..8401622928002.4291284-CDS-E-fasciculatus_F_contig15207:384..840Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15207 385..840 +
1695995784.182781-CDS-E-fasciculatus_F_contig15207:384..8401695995784.182781-CDS-E-fasciculatus_F_contig15207:384..840Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15207 385..840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15207.3683.1

>prot_E-fasciculatus_F_contig15207.3683.1 ID=prot_E-fasciculatus_F_contig15207.3683.1|Name=mRNA_E-fasciculatus_F_contig15207.3683.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=152bp
MFISFSLSREFRGLATSWTKTLARCTPKTTRIGHMGRDVDTREPFILACR
RITYLTVVVTYLTVVAKNESIDPSRTVRLTFTHTLYWTSFLDNPPPLPRL
VLKPSIAFLSLEVALSKSLNLVPACQGNPTRLHARLLLAPRPPTLIKLTA
V*
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mRNA from alignment at E-fasciculatus_F_contig15207:116..984+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15207.3683.1 ID=mRNA_E-fasciculatus_F_contig15207.3683.1|Name=mRNA_E-fasciculatus_F_contig15207.3683.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=869bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15207:116..984+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCCACATGTCGCATCACGCTACACAGGGTATCAAAGCTTATACTGTCGC
CGTTTTCTTAGGGTAACCTTCAGCCAGGGCAGACCCGCGTGTCGCGCATG
TGCTCCTTCAAACGATACAATGTGACGGTTTTGTTCCGTCAACGACGACA
CACAAAGAGGAAGGTATTTATATGCATACGCCTGTACTGTACCCGGAGAG
GCGAAGCCAGGGCATTTGAGACCGTTGTGACAAAAAAAAAGTACTGAAAA
TGTTCATCTTCTTCTGATAATGTTCATCTCCTTTAGCCTATCCCGAGAGT
TTCGAGGCCTCGCTACATCATGGACAAAGACCCTTGCAAGGTGCACACCA
AAGACAACAAGGATAGGACACATGGGGCGTGACGTTGACACTCGCGAGCC
CTTTATTCTTGCGTGCAGAAGAATCACCTACCTTACTGTAGTCGTCACCT
ACCTTACTGTAGTCGCAAAAAACGAAAGCATCGATCCATCTCGAACGGTG
AGACTTACTTTTACACACACATTGTACTGGACTTCCTTTTTGGACAATCC
CCCCCCCCTCCCCCGCCTAGTCTTGAAGCCTTCCATTGCCTTTCTATCTC
TTGAAGTCGCCTTGAGCAAGTCGCTCAACCTCGTCCCTGCCTGCCAAGGG
AACCCGACCCGTCTGCATGCACGCCTCTTGCTTGCTCCACGCCCCCCCAC
TCTCATCAAGCTCACTGCCGTGTAGGTTCGCACCGAACGACATTCACAAG
CCACCAAACCGCTGCTCACGTAACACACGCAAGTGCGTCGTTCGCCACAC
AAACAATCCGTCCGTCTCCCACTAGTGCTTAGCGAAAATCATCGCGCGCC
GAGCGCGAGTGAGTCGCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15207:116..984+

>mRNA_E-fasciculatus_F_contig15207.3683.1 ID=mRNA_E-fasciculatus_F_contig15207.3683.1|Name=mRNA_E-fasciculatus_F_contig15207.3683.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=912bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15207:116..984+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCATCTCCTTTAGCCTATCCCGAGAGTTTCGAGGCCTCGCTACATC
ATGGACAAAGACCCTTGCAAGGTGCACACCAAAGACAACAAGGATAGGAC
ACATGGGGCGTGACGTTGACACTCGCGAGCCCTTTATTCTTGCGTGCAGA
AGAATCACCTACCTTACTGTAGTCGTCACCTACCTTACTGTAGTCGCAAA
AAACGAAAGCATCGATCCATCTCGAACGGTGAGACTTACTTTTACACACA
CATTGTACTGGACTTCCTTTTTGGACAATCCCCCCCCCCTCCCCCGCCTA
GTCTTGAAGCCTTCCATTGCCTTTCTATCTCTTGAAGTCGCCTTGAGCAA
GTCGCTCAACCTCGTCCCTGCCTGCCAAGGGAACCCGACCCGTCTGCATG
CACGCCTCTTGCTTGCTCCACGCCCCCCCACTCTCATCAAGCTCACTGCC
GTGTAGATGTTCATCTCCTTTAGCCTATCCCGAGAGTTTCGAGGCCTCGC
TACATCATGGACAAAGACCCTTGCAAGGTGCACACCAAAGACAACAAGGA
TAGGACACATGGGGCGTGACGTTGACACTCGCGAGCCCTTTATTCTTGCG
TGCAGAAGAATCACCTACCTTACTGTAGTCGTCACCTACCTTACTGTAGT
CGCAAAAAACGAAAGCATCGATCCATCTCGAACGGTGAGACTTACTTTTA
CACACACATTGTACTGGACTTCCTTTTTGGACAATCCCCCCCCCCTCCCC
CGCCTAGTCTTGAAGCCTTCCATTGCCTTTCTATCTCTTGAAGTCGCCTT
GAGCAAGTCGCTCAACCTCGTCCCTGCCTGCCAAGGGAACCCGACCCGTC
TGCATGCACGCCTCTTGCTTGCTCCACGCCCCCCCACTCTCATCAAGCTC
ACTGCCGTGTAG
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