mRNA_E-fasciculatus_F_contig15194.3674.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15194.3674.1
Unique NamemRNA_E-fasciculatus_F_contig15194.3674.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15194.3674.1 vs. uniprot
Match: A0A6H5L526_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L526_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 5.890e-54
Identity = 119/197 (60.41%), Postives = 128/197 (64.97%), Query Frame = 1 
Query:   58 MKVPNMRHLRAMRPTPTPA---------TADAFPLGGPFHDLHNNNNNQGHLSSPRASVSTDPGDTPSSSTASLGDGSGDSVPPLGQRTPPS-PXXXXXXXXXXXXXXXXAATQETTSTSHRTSETPAAVAWPSLGATDGS--------------------SLVHLRGSPRRRRGGGRDDANHPSDQTKVGAKMTSS 558
            ++VPNMRHLRAMRPTPT A           DAFPLGGPFHDL NN+N    LSSPRASVSTDP DTPSSSTASLGDGSG SVPPLGQ TPPS P                +ATQ T  TSHRT+ETP AVAWPSLGA D S                    SLVHLR SPRRRRGG RDDAN PS++T++  KM SS
Sbjct:   75 LQVPNMRHLRAMRPTPTRAXXXXXXXXXAGDAFPLGGPFHDLLNNSNQGRDLSSPRASVSTDPSDTPSSSTASLGDGSGGSVPPLGQLTPPSLPAGADGAGVGVGAGDDGSATQGTMFTSHRTAETPVAVAWPSLGARDNSNNNTHAGIKVAVRQREGNESSLVHLRDSPRRRRGG-RDDANRPSNRTQLEGKMASS 270
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BLAST of mRNA_E-fasciculatus_F_contig15194.3674.1 vs. uniprot
Match: D7FXF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF5_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 3.790e-40
Identity = 113/227 (49.78%), Postives = 121/227 (53.30%), Query Frame = 1 
Query:   25 GRERPTTKRHYMKVPNMRHLRAMRPTPTPA-------TADAFPLGGPFHDLHNNNNNQGHLSSPRASVSTDPGDTPSSSTASL----------------------GDGSGDSVPPLGQRTPPSPXXXXXXXXXXXXXXXXAATQETTSTSHRTSETPAAVAWPSLGATDGSS---------------------LVHLRGSPRRRRGGGRDDANHPSDQTKVGAKMTS 555
            GRER TTKRHYMKVPNMRHLRAMRPT             DAFPLGGPFHDL NN+N    LSS RASVSTDPGDTPSSSTAS                        DG+G                               ATQ T STSHRT+ETPAAV WPSLGA D SS                     L+HLRGSPRRRRG  RDDA+ PSD+T++GAK  S
Sbjct:   83 GRERATTKRHYMKVPNMRHLRAMRPTXXXXXXXXXXXAGDAFPLGGPFHDLLNNSNQGRDLSSTRASVSTDPGDTPSSSTASXXXXXXXXXXXXXXXXXXXXXPGADGTG-------------------VGGVGAGDDDGVATQGTMSTSHRTAETPAAVTWPSLGARDNSSNNNHAGVNKAAVHQPEGSESSLMHLRGSPRRRRGC-RDDASRPSDRTQLGAKTAS 289
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15194.3674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L526_9PHAE5.890e-5460.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXF5_ECTSI3.790e-4049.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15194contigE-fasciculatus_F_contig15194:87..2508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003010.1
Hectar predicted targeting categoryother localisation
Exons5
Model size776
Cds size774
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15194.3674.1prot_E-fasciculatus_F_contig15194.3674.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15194 87..2507 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928000.5414617-CDS-E-fasciculatus_F_contig15194:86..1491622928000.5414617-CDS-E-fasciculatus_F_contig15194:86..149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15194 87..149 +
1695995783.2919629-CDS-E-fasciculatus_F_contig15194:86..1491695995783.2919629-CDS-E-fasciculatus_F_contig15194:86..149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15194 87..149 +
1622928000.5543206-CDS-E-fasciculatus_F_contig15194:810..11161622928000.5543206-CDS-E-fasciculatus_F_contig15194:810..1116Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15194 811..1116 +
1695995783.3056276-CDS-E-fasciculatus_F_contig15194:810..11161695995783.3056276-CDS-E-fasciculatus_F_contig15194:810..1116Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15194 811..1116 +
1622928000.567042-CDS-E-fasciculatus_F_contig15194:1544..16171622928000.567042-CDS-E-fasciculatus_F_contig15194:1544..1617Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15194 1545..1617 +
1695995783.31606-CDS-E-fasciculatus_F_contig15194:1544..16171695995783.31606-CDS-E-fasciculatus_F_contig15194:1544..1617Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15194 1545..1617 +
1622928000.576751-CDS-E-fasciculatus_F_contig15194:1710..20051622928000.576751-CDS-E-fasciculatus_F_contig15194:1710..2005Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15194 1711..2005 +
1695995783.3313658-CDS-E-fasciculatus_F_contig15194:1710..20051695995783.3313658-CDS-E-fasciculatus_F_contig15194:1710..2005Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15194 1711..2005 +
1622928000.5864289-CDS-E-fasciculatus_F_contig15194:2470..25071622928000.5864289-CDS-E-fasciculatus_F_contig15194:2470..2507Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15194 2471..2507 +
1695995783.3442106-CDS-E-fasciculatus_F_contig15194:2470..25071695995783.3442106-CDS-E-fasciculatus_F_contig15194:2470..2507Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15194 2471..2507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15194.3674.1

>prot_E-fasciculatus_F_contig15194.3674.1 ID=prot_E-fasciculatus_F_contig15194.3674.1|Name=mRNA_E-fasciculatus_F_contig15194.3674.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=258bp
GAQGGGGSGRERPTTKRHYMKVPNMRHLRAMRPTPTPATADAFPLGGPFH
DLHNNNNNQGHLSSPRASVSTDPGDTPSSSTASLGDGSGDSVPPLGQRTP
PSPPPGAAGGVDGGAGDSGAATQETTSTSHRTSETPAAVAWPSLGATDGS
SLVHLRGSPRRRRGGGRDDANHPSDQTKVGAKMTSSSPSMAAAVAGRGHG
PGQPTTPSSSSSSPTAVAAGVAAAASTGGGKRKRPAAAAGGGPGQRFGAT
AWPKLRSG
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mRNA from alignment at E-fasciculatus_F_contig15194:87..2508+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15194.3674.1 ID=mRNA_E-fasciculatus_F_contig15194.3674.1|Name=mRNA_E-fasciculatus_F_contig15194.3674.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2422bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15194:87..2508+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGCACAGGGGGGGGGGGGCAGCGGGCGAGAGCGACCAACCACGAAACG
GCACTACATGAAGGTGAAGGTGACCATTCACTCCGTTCACTTCCCGCTTC
GAACAAGAGGCTGCCGTGCTGAAGAACCGGAAGACTTCGGAGATGTTGTC
CACAGGCCTGGGCGTGGGTGACACACCTGTGGATGTTTGGCCTAAGACGA
ACGCCCCCCTTCATGAGCACGACTTCACAGCAGTTCTGTGGGCGTACTCT
CGTGTGTGGGCTTCGACATGGACGATCCCCCATCTGTCCATAGTATCCGT
ATGTACGATAGTTGAACGGTAGGTGTCGGGGCACAGCAACGGAAGCGCGG
TAGCGATAGGCATTGGAAGCCGGGACGCTGTCAAGCACAACCTATACATG
GCACGGGACACTGCTGTCCGTGTCGGGCGTGAGAGTGACGTTGGGTATGT
ACAGCAGTAACAAACAAGAGAGAGCTGCATGTTTTCTGGAACGGCTGTCA
CCTGGCTACACACTTTGAGAGGACACCGGCTTGTTGGCGCTGACTCGGGC
TGCCCACCGCGGCTCACCAACAACGACGCGCTTCTCATCATTAACACCAA
CATTTTCTCGAGACAAACACACCCATAGACCCATAGATACAACCTGTTTG
TGGGTTGTGTCTCCACGCGACGAGCTGCTACAACATGAGCCCCGGTCTGT
CTCCTCTCGCTGCCCCGGCTCCAGGTGCCAAACATGCGACACCTGCGGGC
GATGAGACCCACACCGACACCCGCCACCGCGGACGCCTTCCCGCTAGGCG
GTCCCTTCCACGACCTCCACAACAACAACAACAACCAAGGCCACCTCTCC
TCACCAAGGGCGAGCGTTAGCACAGACCCTGGCGACACGCCGTCTTCGTC
CACGGCTTCCCTCGGCGACGGCAGCGGCGACAGCGTGCCCCCGCTTGGAC
AGCGAACGCCCCCGTCGCCGCCGCCGGGAGCCGCCGGGGGTGTGGACGGG
GGAGCCGGTGATAGTGGTGCTGCAACCCAGGTTCGTTTTTTGTTTGTTTG
TTCCAGTCGTCAACTGCAGTTGGCGTTGAGATTTGTGGTAGGCCCTTGCT
GATTTTCTAGTACAGGTACCTGCCTGTGCCTCTCTGCCGACTTGTCCGGC
GCACCAGGCAAGGTTTGGGGCCAGCGCACGTCTCGACCAAAGGCGCATAG
CTGCATCGTCCGTGCAAGGTTGTGAGACGGCTTCACCAACGCGAATAGAT
TTGTGGCATATTGTATCTAGTCTATCGGTTTCCGAACTATGTTCGACTGC
CGCTGTGGGACGACATACGGCTGGCCCTTTGAAGCGACGCGTTTTTGTTT
ACTCAACGTGCGTATATTGGTATTCCATTTTTTGTTGTTGTTGTTGTGCC
TTACGTTTCATGAGATGTCTCCCCCCCTCTAAATCTTGCTTCCAACTTCC
CCACCCAGGAGACGACGTCAACGAGTCACCGGACGTCAGAAACGCCTGCT
GCCGTCGCCTGGCCCTCGCTAGGGGCAACGGACAACAACAACAACAACAA
CAACAACAACAACAACAGTAGCAGCAGCAACCACCCTGACTTCAACAAGG
CGGCGGTGCGCCAACGGGAAGGGAACGGAAGCAGCCTCGTGCACTTGAGG
GGCTCGCCGAGACGACGACGCGGCGGCGGCAGAGACGACGCCAACCACCC
GAGCGACCAGACAAAGGTCGGGGCTAAGATGACATCGTCGTCGCCTTCGA
TGGCGGCCGCCGTCGCTGGGAGGGGGCATGGACCGGGGCAGCCTACGACG
CCATCATCATCGTCGTCATCGCCGACGGCGGTCGCTGCCGGCGTTGCCGC
CGCTGCTTCCACCGGCGGCGGCAAGCGGAAGAGGCCGGCCGCGGCGGCCG
GGGGAGGACCCGGGCAGAGGTAGGATGGATGCATGCTGGTTCGAGGATGC
ACGCTTTTTGCGCCCTTGCAGGTGTCGGGTTCTACGTCAGTGCAATCAAC
CTTTTATCGTCTCCAGTGTGCGCAGGCGTCTATCAGTCGTTCATGCAATA
TGGATGATGTGCCTAGCTAGCTGCGGCAGGACCAAGATTTTTGCCTCAGT
GCGGCAGCCTGGAGCATAAACTTTGTCGCTCGCGTTATACGACCGACCCC
GCAGGTGCCCACACACGCGCAGGCCCGTACAGTACGCGCTCAGACCACAC
ATCTCGAGGCCCCTTGCGATGATTGATTGATTGACCTTCGATATTCCCCG
GCCACCTACTCTGTAAACAAGCCCTCAACCTCGCATCAATGAGAAGCTGA
AGCGTGTCGTGTTCTCTTGTTCGACTGTTTTTGCTCGCCTCCCCGGGTGG
TGATGCTTGGCTTGGCGGTGACCCCGCGCGGCAGGTTCGGAGCCACGGCG
TGGCCCAAACTCCGTAGCGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15194:87..2508+

>mRNA_E-fasciculatus_F_contig15194.3674.1 ID=mRNA_E-fasciculatus_F_contig15194.3674.1|Name=mRNA_E-fasciculatus_F_contig15194.3674.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1548bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15194:87..2508+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGCACAGGGGGGGGGGGGCAGCGGGCGAGAGCGACCAACCACGAAACG
GCACTACATGAAGGGCGCACAGGGGGGGGGGGGCAGCGGGCGAGAGCGAC
CAACCACGAAACGGCACTACATGAAGGTGCCAAACATGCGACACCTGCGG
GCGATGAGACCCACACCGACACCCGCCACCGCGGACGCCTTCCCGCTAGG
CGGTCCCTTCCACGACCTCCACAACAACAACAACAACCAAGGCCACCTCT
CCTCACCAAGGGCGAGCGTTAGCACAGACCCTGGCGACACGCCGTCTTCG
TCCACGGCTTCCCTCGGCGACGGCAGCGGCGACAGCGTGCCCCCGCTTGG
ACAGCGAACGCCCCCGTCGCCGCCGCCGGGAGCCGCCGGGGGTGTGGACG
GGGGAGCCGGTGATAGTGGTGCTGCAACCCAGGTGCCAAACATGCGACAC
CTGCGGGCGATGAGACCCACACCGACACCCGCCACCGCGGACGCCTTCCC
GCTAGGCGGTCCCTTCCACGACCTCCACAACAACAACAACAACCAAGGCC
ACCTCTCCTCACCAAGGGCGAGCGTTAGCACAGACCCTGGCGACACGCCG
TCTTCGTCCACGGCTTCCCTCGGCGACGGCAGCGGCGACAGCGTGCCCCC
GCTTGGACAGCGAACGCCCCCGTCGCCGCCGCCGGGAGCCGCCGGGGGTG
TGGACGGGGGAGCCGGTGATAGTGGTGCTGCAACCCAGGAGACGACGTCA
ACGAGTCACCGGACGTCAGAAACGCCTGCTGCCGTCGCCTGGCCCTCGCT
AGGGGCAACGGGAGACGACGTCAACGAGTCACCGGACGTCAGAAACGCCT
GCTGCCGTCGCCTGGCCCTCGCTAGGGGCAACGGACGGAAGCAGCCTCGT
GCACTTGAGGGGCTCGCCGAGACGACGACGCGGCGGCGGCAGAGACGACG
CCAACCACCCGAGCGACCAGACAAAGGTCGGGGCTAAGATGACATCGTCG
TCGCCTTCGATGGCGGCCGCCGTCGCTGGGAGGGGGCATGGACCGGGGCA
GCCTACGACGCCATCATCATCGTCGTCATCGCCGACGGCGGTCGCTGCCG
GCGTTGCCGCCGCTGCTTCCACCGGCGGCGGCAAGCGGAAGAGGCCGGCC
GCGGCGGCCGGGGGAGGACCCGGGCAGAGACGGAAGCAGCCTCGTGCACT
TGAGGGGCTCGCCGAGACGACGACGCGGCGGCGGCAGAGACGACGCCAAC
CACCCGAGCGACCAGACAAAGGTCGGGGCTAAGATGACATCGTCGTCGCC
TTCGATGGCGGCCGCCGTCGCTGGGAGGGGGCATGGACCGGGGCAGCCTA
CGACGCCATCATCATCGTCGTCATCGCCGACGGCGGTCGCTGCCGGCGTT
GCCGCCGCTGCTTCCACCGGCGGCGGCAAGCGGAAGAGGCCGGCCGCGGC
GGCCGGGGGAGGACCCGGGCAGAGGTTCGGAGCCACGGCGTGGCCCAAAC
TCCGTAGCGGAGTTCGGAGCCACGGCGTGGCCCAAACTCCGTAGCGGA
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