mRNA_E-fasciculatus_F_contig15192.3673.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15192.3673.1
Unique NamemRNA_E-fasciculatus_F_contig15192.3673.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15192.3673.1 vs. uniprot
Match: D8LI45_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI45_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 1.410e-68
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 1 
Query:    1 VLQLLSHPNIIHMEDVFESDINIHMVMEIMQGGELFDYVVEKGTLSESEASVIVRKVTSALAYMHSLNIIHRDLKPENLLLTSKGAAPEVKIIDFGLAKVLGAGDDRAQSFLGTR 345
            VLQLL HPNIIHMEDVFESD+NIHMVMEIMQGGELFDYVVEKGTLSESEASVIVRKVTSALAYMHSLNIIHRDLKPENLLLTSKGAAPEVKIIDFGLAKVLGAGDDRAQSFLGTR
Sbjct:  122 VLQLLRHPNIIHMEDVFESDVNIHMVMEIMQGGELFDYVVEKGTLSESEASVIVRKVTSALAYMHSLNIIHRDLKPENLLLTSKGAAPEVKIIDFGLAKVLGAGDDRAQSFLGTR 236
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BLAST of mRNA_E-fasciculatus_F_contig15192.3673.1 vs. uniprot
Match: A0A662X2K5_9STRA (Protein kinase domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X2K5_9STRA)

HSP 1 Score: 156 bits (395), Expect = 8.030e-46
Identity = 81/111 (72.97%), Postives = 92/111 (82.88%), Query Frame = 1 
Query:   13 LSHPNIIHMEDVFESDINIHMVMEIMQGGELFDYVVEKGTLSESEASVIVRKVTSALAYMHSLNIIHRDLKPENLLLTSKGAAPEVKIIDFGLAKVLGAGDDRAQSFLGTR 345
            ++HPNIIH+EDVF +D  I MV E M GGELFDYVV+KGTLSE EAS IVRK+TSA+AYMH+  IIHRDLKPENL+LTSK    EVKIIDFGLAK+L A DD+  SFLGTR
Sbjct:    1 MNHPNIIHIEDVFLTDSKICMVTEYMSGGELFDYVVDKGTLSEVEASAIVRKITSAVAYMHACGIIHRDLKPENLMLTSKSRGAEVKIIDFGLAKLLDA-DDKTASFLGTR 110
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BLAST of mRNA_E-fasciculatus_F_contig15192.3673.1 vs. uniprot
Match: W4GPQ5_9STRA (CAMK/CAMK1 protein kinase, variant 3 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GPQ5_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.630e-45
Identity = 80/118 (67.80%), Postives = 97/118 (82.20%), Query Frame = 1 
Query:    1 VLQLLSHPNIIHMEDVFESDINIHMVMEIMQGGELFDYVVEKGTLSESEASVIVRKVTSALAYMHSLNIIHRDLKPENLLLTSKGAAPEVKIIDFGLAKVLGAGDDRAQSFLGTRVGF 354
            VLQ L HPNIIHMEDV+++D  I MV E+M+GGELFDYVV+KGTLSE EAS +VRK+TSA+AYMH+  ++HRDLKPEN+LLTS     E+KIIDFGLAK+L   D + +SFLGTRV F
Sbjct:  127 VLQSLDHPNIIHMEDVYQTDTRICMVTELMEGGELFDYVVQKGTLSEVEASCLVRKITSAIAYMHACGVVHRDLKPENVLLTSPSPNAEIKIIDFGLAKLL--HDSQTRSFLGTRVLF 242
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BLAST of mRNA_E-fasciculatus_F_contig15192.3673.1 vs. uniprot
Match: A0A1V9ZSD6_9STRA (Protein kinase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZSD6_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.970e-45
Identity = 82/115 (71.30%), Postives = 96/115 (83.48%), Query Frame = 1 
Query:    1 VLQLLSHPNIIHMEDVFESDINIHMVMEIMQGGELFDYVVEKGTLSESEASVIVRKVTSALAYMHSLNIIHRDLKPENLLLTSKGAAPEVKIIDFGLAKVLGAGDDRAQSFLGTR 345
            VLQ LSHPNIIHMEDV+++D  I MV E M+GGELFDY+V KGTLSE EAS +VRK+TSALAYMH+  ++HRDLKPENLLLTSK    EVKIIDFGLAK+L   D++ +SFLGTR
Sbjct:  120 VLQSLSHPNIIHMEDVYQTDNRISMVTEHMEGGELFDYIVNKGTLSEVEASCLVRKITSALAYMHACGVVHRDLKPENLLLTSKSPNAEVKIIDFGLAKLL--HDNQTRSFLGTR 232
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BLAST of mRNA_E-fasciculatus_F_contig15192.3673.1 vs. uniprot
Match: A0A397AXE7_9STRA (Protein kinase domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AXE7_9STRA)

HSP 1 Score: 159 bits (401), Expect = 3.030e-45
Identity = 82/129 (63.57%), Postives = 102/129 (79.07%), Query Frame = 1 
Query:    1 VLQLLSHPNIIHMEDVFESDINIHMVMEIMQGGELFDYVVEKGTLSESEASVIVRKVTSALAYMHSLNIIHRDLKPENLLLTSKGAAPEVKIIDFGLAKVLGAGDDRAQSFLGTRVGF-VEFDSISAGL 384
            VLQ L HPNIIHMEDV+++D  I MV E+M+GGELFDYVV+KGTLSE EAS +VRK+TSA+AYMH+  ++HRDLKPEN+LLTS     E+KIIDFGLAK+L   D + +SFLGTR  F + F   ++GL
Sbjct:  127 VLQSLDHPNIIHMEDVYQTDTRICMVTELMEGGELFDYVVQKGTLSEVEASCLVRKITSAIAYMHACGVVHRDLKPENVLLTSPSPNAEIKIIDFGLAKLL--HDSQTRSFLGTRAKFGLRFPRWASGL 253
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BLAST of mRNA_E-fasciculatus_F_contig15192.3673.1 vs. uniprot
Match: A0A6G0XU61_9STRA (Protein kinase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XU61_9STRA)

HSP 1 Score: 159 bits (402), Expect = 5.000e-45
Identity = 81/115 (70.43%), Postives = 95/115 (82.61%), Query Frame = 1 
Query:    1 VLQLLSHPNIIHMEDVFESDINIHMVMEIMQGGELFDYVVEKGTLSESEASVIVRKVTSALAYMHSLNIIHRDLKPENLLLTSKGAAPEVKIIDFGLAKVLGAGDDRAQSFLGTR 345
            VLQ L HPNIIHMEDV+++D  I MV E+M+GGELFDYVV KGTLSE EAS +VRK+TSA+AYMH+  ++HRDLKPENLLLTSK    EVKIIDFGLAK+L   D + +SFLGTR
Sbjct:  127 VLQSLDHPNIIHMEDVYQTDSRICMVTELMEGGELFDYVVHKGTLSEVEASCLVRKITSAIAYMHACGVVHRDLKPENLLLTSKSPNAEVKIIDFGLAKLL--HDSQTRSFLGTR 239
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BLAST of mRNA_E-fasciculatus_F_contig15192.3673.1 vs. uniprot
Match: W4GRS7_9STRA (CAMK/CAMK1 protein kinase, variant 2 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GRS7_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.040e-44
Identity = 78/115 (67.83%), Postives = 95/115 (82.61%), Query Frame = 1 
Query:    1 VLQLLSHPNIIHMEDVFESDINIHMVMEIMQGGELFDYVVEKGTLSESEASVIVRKVTSALAYMHSLNIIHRDLKPENLLLTSKGAAPEVKIIDFGLAKVLGAGDDRAQSFLGTR 345
            VLQ L HPNIIHMEDV+++D  I MV E+M+GGELFDYVV+KGTLSE EAS +VRK+TSA+AYMH+  ++HRDLKPEN+LLTS     E+KIIDFGLAK+L   D + +SFLGTR
Sbjct:  127 VLQSLDHPNIIHMEDVYQTDTRICMVTELMEGGELFDYVVQKGTLSEVEASCLVRKITSAIAYMHACGVVHRDLKPENVLLTSPSPNAEIKIIDFGLAKLL--HDSQTRSFLGTR 239
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BLAST of mRNA_E-fasciculatus_F_contig15192.3673.1 vs. uniprot
Match: A0A482SM04_9ARCH (Serine/threonine-protein kinase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SM04_9ARCH)

HSP 1 Score: 159 bits (401), Expect = 1.560e-44
Identity = 80/115 (69.57%), Postives = 99/115 (86.09%), Query Frame = 1 
Query:    1 VLQLLSHPNIIHMEDVFESDINIHMVMEIMQGGELFDYVVEKGTLSESEASVIVRKVTSALAYMHSLNIIHRDLKPENLLLTSKGAAPEVKIIDFGLAKVLGAGDDRAQSFLGTR 345
            VLQ L+HPNII + D FE+   I+M+ME+M+GGELFDYVVEKGTLSE EASVI+RK+TSA+A+MHS+ IIHRDLKPENLLLT+KGA  E+K+IDFGLAKV+   ++ A SFLGT+
Sbjct:  175 VLQTLNHPNIIKLIDTFETPDRIYMIMELMKGGELFDYVVEKGTLSEEEASVIIRKITSAVAHMHSMQIIHRDLKPENLLLTTKGADAEIKLIDFGLAKVM--FEEVASSFLGTK 287
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15192.3673.1 vs. uniprot
Match: W4GS43_9STRA (CAMK/CAMK1 protein kinase, variant 1 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GS43_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.840e-44
Identity = 78/115 (67.83%), Postives = 95/115 (82.61%), Query Frame = 1 
Query:    1 VLQLLSHPNIIHMEDVFESDINIHMVMEIMQGGELFDYVVEKGTLSESEASVIVRKVTSALAYMHSLNIIHRDLKPENLLLTSKGAAPEVKIIDFGLAKVLGAGDDRAQSFLGTR 345
            VLQ L HPNIIHMEDV+++D  I MV E+M+GGELFDYVV+KGTLSE EAS +VRK+TSA+AYMH+  ++HRDLKPEN+LLTS     E+KIIDFGLAK+L   D + +SFLGTR
Sbjct:   67 VLQSLDHPNIIHMEDVYQTDTRICMVTELMEGGELFDYVVQKGTLSEVEASCLVRKITSAIAYMHACGVVHRDLKPENVLLTSPSPNAEIKIIDFGLAKLL--HDSQTRSFLGTR 179
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BLAST of mRNA_E-fasciculatus_F_contig15192.3673.1 vs. uniprot
Match: K3X2D0_GLOUD (Protein kinase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2D0_GLOUD)

HSP 1 Score: 156 bits (394), Expect = 1.040e-43
Identity = 80/115 (69.57%), Postives = 93/115 (80.87%), Query Frame = 1 
Query:    1 VLQLLSHPNIIHMEDVFESDINIHMVMEIMQGGELFDYVVEKGTLSESEASVIVRKVTSALAYMHSLNIIHRDLKPENLLLTSKGAAPEVKIIDFGLAKVLGAGDDRAQSFLGTR 345
            VLQ ++HPNIIH+EDV+ SD  I MV E M GGELFDY+VEKGTLSE EAS  VRK+TSA+AYMH+  +IHRDLKPENL+LTS+    EVKIIDFGLAK+L   DD  +SFLGTR
Sbjct:  120 VLQSMNHPNIIHIEDVYLSDTKICMVTEYMDGGELFDYIVEKGTLSEVEASTFVRKITSAVAYMHACGVIHRDLKPENLMLTSRSPHAEVKIIDFGLAKLLDP-DDTTESFLGTR 233
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15192.3673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI45_ECTSI1.410e-6898.26Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A662X2K5_9STRA8.030e-4672.97Protein kinase domain-containing protein n=1 Tax=N... [more]
W4GPQ5_9STRA1.630e-4567.80CAMK/CAMK1 protein kinase, variant 3 n=1 Tax=Aphan... [more]
A0A1V9ZSD6_9STRA1.970e-4571.30Protein kinase n=3 Tax=Saprolegniaceae TaxID=4764 ... [more]
A0A397AXE7_9STRA3.030e-4563.57Protein kinase domain-containing protein n=4 Tax=A... [more]
A0A6G0XU61_9STRA5.000e-4570.43Protein kinase domain-containing protein n=1 Tax=A... [more]
W4GRS7_9STRA1.040e-4467.83CAMK/CAMK1 protein kinase, variant 2 n=2 Tax=Aphan... [more]
A0A482SM04_9ARCH1.560e-4469.57Serine/threonine-protein kinase n=1 Tax=archaeon T... [more]
W4GS43_9STRA1.840e-4467.83CAMK/CAMK1 protein kinase, variant 1 n=1 Tax=Aphan... [more]
K3X2D0_GLOUD1.040e-4369.57Protein kinase domain-containing protein n=1 Tax=G... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15192contigE-fasciculatus_F_contig15192:299..1404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score222.6
Seed ortholog evalue1e-55
Seed eggNOG ortholog2880.D8LI45
KEGG koko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.17
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-26_005180.3
Exons2
Model size387
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928000.4923635-CDS-E-fasciculatus_F_contig15192:298..5171622928000.4923635-CDS-E-fasciculatus_F_contig15192:298..517Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15192 299..517 -
1695995783.260996-CDS-E-fasciculatus_F_contig15192:298..5171695995783.260996-CDS-E-fasciculatus_F_contig15192:298..517Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15192 299..517 -
1622928000.5063102-CDS-E-fasciculatus_F_contig15192:1236..14041622928000.5063102-CDS-E-fasciculatus_F_contig15192:1236..1404Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15192 1237..1404 -
1695995783.2752433-CDS-E-fasciculatus_F_contig15192:1236..14041695995783.2752433-CDS-E-fasciculatus_F_contig15192:1236..1404Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15192 1237..1404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15192.3673.1prot_E-fasciculatus_F_contig15192.3673.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15192 299..1404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15192.3673.1

>prot_E-fasciculatus_F_contig15192.3673.1 ID=prot_E-fasciculatus_F_contig15192.3673.1|Name=mRNA_E-fasciculatus_F_contig15192.3673.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=129bp
VLQLLSHPNIIHMEDVFESDINIHMVMEIMQGGELFDYVVEKGTLSESEA
SVIVRKVTSALAYMHSLNIIHRDLKPENLLLTSKGAAPEVKIIDFGLAKV
LGAGDDRAQSFLGTRVGFVEFDSISAGL*
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mRNA from alignment at E-fasciculatus_F_contig15192:299..1404-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15192.3673.1 ID=mRNA_E-fasciculatus_F_contig15192.3673.1|Name=mRNA_E-fasciculatus_F_contig15192.3673.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1106bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15192:299..1404- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCTTGCAACTGCTGAGTCACCCAAACATCATACACATGGAAGACGTGTT
CGAGTCGGACATTAACATCCACATGGTGATGGAGATCATGCAGGGCGGCG
AGCTCTTCGACTACGTGGTGGAGAAGGGGACCCTTAGCGAGAGCGAGGCC
AGCGTCATTGTCAGGAAGGTGATGACGGTAGCGTACCGCTTCCTGTGGCG
TGTGTGGGGTACCTCTCCAGCGCGATTTGCGGGATCACACGGCCAACGGT
GAACGATGGGGTCGGGCCTGGACGGTGCTGGTCCCTTCCCTGTCCGCATA
CTTTTGCTACGCGGCGTTCCATGTCGATGTCAGGTGTACCCTCTCCTGTT
CTTTAGTGTCTTCCCTCTCCGGCTGTGTACGTGTATGCCACACCATTCCC
TTGACGGCGGAGAAGGTCTTGGTTGTGGCGCGCCACCTGAACCTCCTCTC
GAATGAACGTATTGTCAACCCCGACCACGTTGTACGGCTGTGCAAACCCC
GGGGTCGGTGTCTTCTTCGAAGCGTCGTCGATTCAACCCCTCGGTTGTGT
CTCGCAACGCAGCTTTTGCAGAACCAAGCGTTCCACTGCTTTTGTGTGCT
TCTAGCCTCAAAGAAACCCACACACACACAGTTGTTGGTTGAGGGGTTGT
ATGAAATGCCTGGCATTTCTTCTTGGTGCACACTCAGAAACCAGGGCCGG
GAGAGCGCAACGGCCGACCTCCTACCCCTCACTACTGCTGTGTCGAACAA
ACCACATGGTCTGCGCCGCGCCGCCCACGCCGAGCTTCCCTACCGCATGC
ACATGCCCTCCTTGCTGATTCCACGAAATATACACGAACGAACGAACGAA
TGAAAGACATTGAACGAACCCCTCCCCCGCGCTCCAGGTGACCTCTGCCC
TGGCCTACATGCACTCGTTGAACATCATCCACCGGGACCTGAAGCCCGAG
AACTTGCTCCTGACCTCCAAGGGCGCCGCGCCGGAGGTTAAGATAATCGA
CTTCGGGCTGGCGAAGGTGTTGGGCGCGGGTGACGACAGGGCGCAGTCCT
TCCTGGGGACAAGGGTGGGTTTCGTCGAGTTTGACAGTATCTCCGCAGGT
CTTTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15192:299..1404-

>mRNA_E-fasciculatus_F_contig15192.3673.1 ID=mRNA_E-fasciculatus_F_contig15192.3673.1|Name=mRNA_E-fasciculatus_F_contig15192.3673.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=774bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15192:299..1404- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCTTGCAACTGCTGAGTCACCCAAACATCATACACATGGAAGACGTGTT
CGAGTCGGACATTAACATCCACATGGTGATGGAGATCATGCAGGGCGGCG
AGCTCTTCGACTACGTGGTGGAGAAGGGGACCCTTAGCGAGAGCGAGGCC
AGCGTCATTGTCAGGAAGGTCTTGCAACTGCTGAGTCACCCAAACATCAT
ACACATGGAAGACGTGTTCGAGTCGGACATTAACATCCACATGGTGATGG
AGATCATGCAGGGCGGCGAGCTCTTCGACTACGTGGTGGAGAAGGGGACC
CTTAGCGAGAGCGAGGCCAGCGTCATTGTCAGGAAGGTGACCTCTGCCCT
GGCCTACATGCACTCGTTGAACATCATCCACCGGGACCTGAAGCCCGAGA
ACTTGCTCCTGACCTCCAAGGGCGCCGCGCCGGAGGTTAAGATAATCGAC
TTCGGGCTGGCGAAGGTGTTGGGCGCGGGTGACGACAGGGCGCAGTCCTT
CCTGGGGACAAGGGTGGGTTTCGTCGAGTTTGACAGTATCTCCGCAGGTC
TTTAAGTGACCTCTGCCCTGGCCTACATGCACTCGTTGAACATCATCCAC
CGGGACCTGAAGCCCGAGAACTTGCTCCTGACCTCCAAGGGCGCCGCGCC
GGAGGTTAAGATAATCGACTTCGGGCTGGCGAAGGTGTTGGGCGCGGGTG
ACGACAGGGCGCAGTCCTTCCTGGGGACAAGGGTGGGTTTCGTCGAGTTT
GACAGTATCTCCGCAGGTCTTTAA
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