mRNA_E-fasciculatus_F_contig1519.3671.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1519.3671.1
Unique NamemRNA_E-fasciculatus_F_contig1519.3671.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1519.3671.1 vs. uniprot
Match: A0A6H5K9Y6_9PHAE (dTMP kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9Y6_9PHAE)

HSP 1 Score: 446 bits (1148), Expect = 4.320e-154
Identity = 228/241 (94.61%), Postives = 230/241 (95.44%), Query Frame = 3
Query:  186 LPTATRTGSAATMASTKDAPAGPVKRGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPVGLSVTWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKEEFQRTVRATFLALMEEDKASGVAWQLIDAKREIGSIQDEIQKIATSVVGEVEGKEIGSLWSRKED 908
            +P ATRTG AA MASTKDAPAGP KRGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMRFPDRTTPIG MINGFLQNTT IDDRCVHLLFSANRWEAESKIRELLK GTTVVCDRYAYSGVAFSASKP GLSV WCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKEEFQRTVRATFLALMEEDKASGVAWQLIDA REIGSIQDEIQKI TSVVGEVEGK+IGSLWSRKED
Sbjct:    1 MPAATRTGPAAVMASTKDAPAGPAKRGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMRFPDRTTPIGQMINGFLQNTTGIDDRCVHLLFSANRWEAESKIRELLKVGTTVVCDRYAYSGVAFSASKP-GLSVRWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKEEFQRTVRATFLALMEEDKASGVAWQLIDANREIGSIQDEIQKIGTSVVGEVEGKDIGSLWSRKED 240          
BLAST of mRNA_E-fasciculatus_F_contig1519.3671.1 vs. uniprot
Match: A0A835ZMW1_9STRA (dTMP kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMW1_9STRA)

HSP 1 Score: 263 bits (671), Expect = 3.640e-82
Identity = 136/228 (59.65%), Postives = 167/228 (73.25%), Query Frame = 3
Query:  225 ASTKDAPAGPV---KRGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPVGLSVTWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKEEFQRTVRATFLALMEEDKASGVAWQLIDAKREIGSIQDEIQKIATSVVGEV--EGKEIGSLW 893
            A+T+ APAG     +RGAFILFEGVDRCGKTTQ   LV+ LK+ GHDA  MRFPDRTT IG MIN +LQ+T ++DD+C+HLLFSANRWEA S I   L AG T+VCDRYAYSGVAFSA+KP GL+V WCK PD+GLPAPD +++LD++VE AM+RGQFGEERYEK +FQR VR  F+AL E D   G  W ++DA      +   +   A   + +V  EG++I  LW
Sbjct:    3 AATEAAPAGDSNGPQRGAFILFEGVDRCGKTTQCERLVKRLKEDGHDAVHMRFPDRTTAIGQMINAYLQSTAEMDDQCIHLLFSANRWEALSTIERRLAAGLTIVCDRYAYSGVAFSAAKP-GLTVDWCKAPDKGLPAPDVVIYLDLAVEAAMERGQFGEERYEKADFQRRVRDNFMALREAD---GERWAVVDAAASRDEVAAAVHAAAAKAIADVKEEGRQIQKLW 226          
BLAST of mRNA_E-fasciculatus_F_contig1519.3671.1 vs. uniprot
Match: A0A7S2H363_9STRA (dTMP kinase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H363_9STRA)

HSP 1 Score: 250 bits (639), Expect = 8.720e-77
Identity = 131/227 (57.71%), Postives = 154/227 (67.84%), Query Frame = 3
Query:  255 VKRGAFILFEGVDRCGKTTQANLLVESLKQAGHDA--------------CFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPVGLSVTWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKEEFQRTVRATFLALMEEDKASGVAWQLIDAKREIGSIQDEIQKIATSVVGEVEGKEIGSLW 893
            V RGAFIL EGVDRCGKTTQ  +L ++L  A H A                MRFPDRTT IG MING+L N  D+DDR +HLLFSANRWEA +KI + L+AGTT+VCDRYAYSGVAFS +K  GLSV WC  PDRGLP PD +++LD+SVEDAM+RG FGEERYEKEEFQR V   F A+M  D      W ++DA + I  +Q EI  IA +   +  GK I  LW
Sbjct:   42 VGRGAFILLEGVDRCGKTTQTKMLADTLSAARHAAPSGAIDDQNMPPRATLMRFPDRTTTIGQMINGYLANGVDMDDRAIHLLFSANRWEARAKIEDTLRAGTTIVCDRYAYSGVAFSGAKE-GLSVEWCMAPDRGLPCPDCVIYLDLSVEDAMQRGAFGEERYEKEEFQRRVSDNFKAIMASDSTP---WHVVDATKSIAEMQAEILAIAEATQRQCRGKPITGLW 264          
BLAST of mRNA_E-fasciculatus_F_contig1519.3671.1 vs. uniprot
Match: A0A7S2L3C4_9STRA (dTMP kinase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L3C4_9STRA)

HSP 1 Score: 232 bits (592), Expect = 7.060e-70
Identity = 119/227 (52.42%), Postives = 157/227 (69.16%), Query Frame = 3
Query:  240 APAGPVKRGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPVG------LSVTWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKEEFQRTVRATFLALMEEDKASG-VAWQLIDAKREIGSIQDEIQKIATSVVGEVE-GKEIGSLWS 896
            AP+ P KRGAFIL EGVDRCGKTTQ  LL++ L   G  A  MRFPDRTT +G +ING+L  T +++DR VHLLFSANRWEA + + + L  GTT+VCDRYAYSGVAFS++K         LS+ WCK  D GLPAPD ++FLD++ E+A KRG +G ERYEK+E Q  VR  F  L ++D+ASG V W+++DA + +  +Q +I +I    +  V  G ++  +WS
Sbjct:    9 APSAPAKRGAFILLEGVDRCGKTTQCGLLLQHLLALGITALAMRFPDRTTMVGQLINGYLSQTREMEDRAVHLLFSANRWEASNSLAQHLANGTTIVCDRYAYSGVAFSSAKSYPDARHKELSIDWCKACDIGLPAPDVVIFLDLTQEEAQKRGGYGGERYEKKEMQMRVRQRFDELQKDDEASGRVPWKVVDASQSVEDVQRDINQIVEETLQRVNAGADLKKMWS 235          
BLAST of mRNA_E-fasciculatus_F_contig1519.3671.1 vs. uniprot
Match: L1JWU7_GUITC (dTMP kinase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JWU7_GUITC)

HSP 1 Score: 228 bits (580), Expect = 8.970e-69
Identity = 115/213 (53.99%), Postives = 151/213 (70.89%), Query Frame = 3
Query:  261 RGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPVGLSVTWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKEEFQRTVRATFLALMEEDKASGVAWQLIDAKREIGSIQDEIQKIATSVVGEVEGKEIGSLWSR 899
            RGA I+ EG+DR GK+TQ   LVE L   G  A  M FPDRTT +G +IN +LQ+  D+DD  +HLLFSANRWEA   IR+ L +G T++ DRYAYSGVAFSA+K   L + WCK PDRGLPAPD +++LD+S + A +RG +GEERYEKEEFQ+ VR  F ALM ++ A    W+ +DA + +  + +EI+ IAT +V +V  K IGSLW++
Sbjct:    4 RGALIVLEGLDRSGKSTQVIRLVEKLVSMGKKASKMNFPDRTTTVGGLINEYLQSGKDLDDAVIHLLFSANRWEATRSIRDRLSSGETLIVDRYAYSGVAFSAAKGT-LDIEWCKGPDRGLPAPDCVIYLDVSSDVAKQRGGYGEERYEKEEFQKKVRTCFEALMSQEPAM---WRRVDANKTMDEVTEEIEGIATKIVDQVTDKPIGSLWTK 212          
BLAST of mRNA_E-fasciculatus_F_contig1519.3671.1 vs. uniprot
Match: A0A2R5GGP8_9STRA (dTMP kinase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGP8_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.450e-67
Identity = 112/218 (51.38%), Postives = 151/218 (69.27%), Query Frame = 3
Query:  240 APAGPVKRGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPVGLSVTWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKEEFQRTVRATFLALMEEDKASGVAWQLIDAKREIGSIQDEIQKIATSVVGEVEGKEIGSLW 893
            A +G   RGAFI+FEGVDRCGKTTQ   LV +L+    D    RFPDRTT  G +I+ +L+N  ++DD  VHLLFSANRWE+   IR+ L AGTT++ DRYA+SGV FSA+K  G+ + WCK PD GLPAPD ++FL +++ DAMKRGQFGEERYEK++FQ  V   F+ +  +      +W++IDAKR I +I +EI+ +A  ++     K + +LW
Sbjct:    2 AVSGMTARGAFIVFEGVDRCGKTTQTQRLVAALQSRKVDVELCRFPDRTTATGKIIDSYLKNGVELDDHAVHLLFSANRWESAQAIRKKLAAGTTLIVDRYAHSGVCFSAAKQ-GMDIEWCKAPDAGLPAPDAVIFLKLAIADAMKRGQFGEERYEKQDFQTKVLDNFMQMKTD------SWRVIDAKRPIDAIAEEIETLALDIINSCADKPLETLW 212          
BLAST of mRNA_E-fasciculatus_F_contig1519.3671.1 vs. uniprot
Match: A0A7S3H922_9STRA (dTMP kinase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H922_9STRA)

HSP 1 Score: 225 bits (573), Expect = 2.620e-67
Identity = 115/228 (50.44%), Postives = 159/228 (69.74%), Query Frame = 3
Query:  213 AATMASTKDAPAGPVKRGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPVGLSVTWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKEEFQRTVRATFLALMEEDKASG-VAWQLIDAKREIGSIQDEIQKIATSVVGEVEGKEIGSLW 893
            AA++ +T D       RGAFILFEGVDRCGKTTQ  +L + L ++  +   +RFP+R + IG +I+ +LQ+T++++D+ +HLLFSANRWE    I   L  G T++CDRYAYSGVAF+++K  GL + WCK  DRGLPAPD I++LDI VEDA KRG FGEERYEK +FQ+ VR  F+ L  ED+AS  V W +++A + I  +  EI+ I  +V+  ++ K +G LW
Sbjct:   18 AASLLTTTDGLRMGASRGAFILFEGVDRCGKTTQVGMLKDYLTKS-RETEQIRFPERKSTIGQLIDSYLQSTSNMNDQSIHLLFSANRWEQSDSIESKLANGNTLICDRYAYSGVAFTSAK--GLDLDWCKSCDRGLPAPDCIIYLDIPVEDAAKRGNFGEERYEKIDFQKKVREQFMLLQSEDQASAAVPWHVVNAAQSIDEVHSEIKNIVDNVLASLDDKPVGKLW 242          
BLAST of mRNA_E-fasciculatus_F_contig1519.3671.1 vs. uniprot
Match: A0A1Z5K5E1_FISSO (dTMP kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K5E1_FISSO)

HSP 1 Score: 224 bits (571), Expect = 3.900e-67
Identity = 114/211 (54.03%), Postives = 150/211 (71.09%), Query Frame = 3
Query:  261 RGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPVGLSVTWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKEEFQRTVRATFLALMEEDKASGVAWQLIDAKREIGSIQDEIQKIATSVVGEVEGKEIGSLW 893
            RGAF L EGVDRCGKTTQ   L++ L QAG  A  MRFP+RTT  G +I+ +LQ T+++DDR +HLLFSANRWE+   I E LKAGT++VCDRYAYSGVAFSASK   + + WC+ PDRGLPAPD ++FLD+S E A +RG +G+ERYEK E Q+ VR  F  L + D   GV W+ ++A + +  ++D+I  IA   + +V+  E+  LW
Sbjct:   11 RGAFFLLEGVDRCGKTTQCQRLLQRLLQAGIAATAMRFPNRTTSTGQLIDSYLQQTSNMDDRAIHLLFSANRWESADMIVEQLKAGTSIVCDRYAYSGVAFSASKD-NMDLEWCQAPDRGLPAPDCVIFLDMSTEQAEERGGYGQERYEKREMQQRVRQRFQELSQLD--DGVQWKFVNAAQTMDQVEDDIWSIAQQTLEQVQ-PEVRQLW 217          
BLAST of mRNA_E-fasciculatus_F_contig1519.3671.1 vs. uniprot
Match: B5Y400_PHATC (dTMP kinase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y400_PHATC)

HSP 1 Score: 224 bits (571), Expect = 5.720e-67
Identity = 119/224 (53.12%), Postives = 158/224 (70.54%), Query Frame = 3
Query:  255 VKRGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASK--PVG---LSVTWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKEEFQRTVRATFLALMEEDKASG-VAWQLIDAKREIGSIQDEIQKIATSVVGEVEG-KEIGSLWSRKE 905
            + RGAF++ EGVDRCGKTTQ+ LL++ L  AG  AC MRFPDRTT  G +I+ +LQ++ ++DDR +HLLFSANRWE+   +   L+AGTTV+CDRYAYSGVAFSASK    G   LS+ WC+ PD+GLPAPD ++FLD+S  +A +RG +G ERYEK+E Q  VR  F  L   DKASG VAW+ IDA + +  ++++I K     +  V+G K +G +W   E
Sbjct:    8 ISRGAFVVLEGVDRCGKTTQSGLLLKRLLAAGIAACSMRFPDRTTATGKIIDQYLQSSQNLDDRAIHLLFSANRWESADALTAHLQAGTTVLCDRYAYSGVAFSASKIDKKGNSLLSLDWCQAPDQGLPAPDCVIFLDLSQAEAEQRGGYGGERYEKKEMQIRVRHRFGDLEAIDKASGRVAWKFIDAAQSVEQVENDIWKAVEETIQAVKGSKALGKMWQDGE 231          
BLAST of mRNA_E-fasciculatus_F_contig1519.3671.1 vs. uniprot
Match: W7TN04_9STRA (dTMP kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN04_9STRA)

HSP 1 Score: 224 bits (570), Expect = 8.360e-66
Identity = 116/213 (54.46%), Postives = 146/213 (68.54%), Query Frame = 3
Query:  261 RGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMRFPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPVGLSVTWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKEEFQRTVRATFLALMEEDKASGVAWQLIDAKREIGSIQDEIQKI--ATSVVGEVEGKEIGSLW 893
            RGAFI+ EGVDRCGKTTQ   +V++L   G  A  +RFPDRTT IG MIN +L N TD+DDR +HLLFSANRWEA + +R  L AG T+VCDRYAYSGVAFSA+K  G+   WCK  DRGLP PD +++LDIS E A KRG++GEERYE +  Q  VR  F  LME D      W ++DA   +  + + + K+  AT+   E EG ++G+LW
Sbjct:  112 RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKD-GMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSI----WHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLW 319          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1519.3671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9Y6_9PHAE4.320e-15494.61dTMP kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A835ZMW1_9STRA3.640e-8259.65dTMP kinase n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7S2H363_9STRA8.720e-7757.71dTMP kinase n=1 Tax=Dictyocha speculum TaxID=35687... [more]
A0A7S2L3C4_9STRA7.060e-7052.42dTMP kinase n=1 Tax=Leptocylindrus danicus TaxID=1... [more]
L1JWU7_GUITC8.970e-6953.99dTMP kinase n=2 Tax=Guillardia theta TaxID=55529 R... [more]
A0A2R5GGP8_9STRA1.450e-6751.38dTMP kinase n=1 Tax=Hondaea fermentalgiana TaxID=2... [more]
A0A7S3H922_9STRA2.620e-6750.44dTMP kinase (Fragment) n=1 Tax=Spumella elongata T... [more]
A0A1Z5K5E1_FISSO3.900e-6754.03dTMP kinase n=2 Tax=Fistulifera solaris TaxID=1519... [more]
B5Y400_PHATC5.720e-6753.13dTMP kinase n=2 Tax=Phaeodactylum tricornutum TaxI... [more]
W7TN04_9STRA8.360e-6654.46dTMP kinase n=2 Tax=Monodopsidaceae TaxID=425072 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1519contigE-fasciculatus_F_contig1519:7917..12216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score444.5
Seed ortholog evalue3e-122
Seed eggNOG ortholog2880.D7FSC0
KEGG rclassRC00002
KEGG koko:K00943
KEGG ReactionR02094,R02098
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00053
GOsGO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.dTDP metabolic process
EggNOG OGsCOG0125@1,KOG3327@2759
EC2.7.4.9
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-20_004950.1
Exons6
Model size1445
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1519.3671.1prot_E-fasciculatus_F_contig1519.3671.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1519 8451..11995 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928000.2397459-UTR-E-fasciculatus_F_contig1519:7916..84501622928000.2397459-UTR-E-fasciculatus_F_contig1519:7916..8450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1519 7917..8450 -
1695995783.1022823-UTR-E-fasciculatus_F_contig1519:7916..84501695995783.1022823-UTR-E-fasciculatus_F_contig1519:7916..8450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1519 7917..8450 -
1622928000.3313768-UTR-E-fasciculatus_F_contig1519:11995..122161622928000.3313768-UTR-E-fasciculatus_F_contig1519:11995..12216Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1519 11996..12216 -
1695995783.1692116-UTR-E-fasciculatus_F_contig1519:11995..122161695995783.1692116-UTR-E-fasciculatus_F_contig1519:11995..12216Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1519 11996..12216 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928000.2518916-CDS-E-fasciculatus_F_contig1519:8450..85941622928000.2518916-CDS-E-fasciculatus_F_contig1519:8450..8594Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1519 8451..8594 -
1695995783.113413-CDS-E-fasciculatus_F_contig1519:8450..85941695995783.113413-CDS-E-fasciculatus_F_contig1519:8450..8594Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1519 8451..8594 -
1622928000.2652147-CDS-E-fasciculatus_F_contig1519:9412..95021622928000.2652147-CDS-E-fasciculatus_F_contig1519:9412..9502Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1519 9413..9502 -
1695995783.1215422-CDS-E-fasciculatus_F_contig1519:9412..95021695995783.1215422-CDS-E-fasciculatus_F_contig1519:9412..9502Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1519 9413..9502 -
1622928000.2785914-CDS-E-fasciculatus_F_contig1519:9960..100581622928000.2785914-CDS-E-fasciculatus_F_contig1519:9960..10058Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1519 9961..10058 -
1695995783.1301494-CDS-E-fasciculatus_F_contig1519:9960..100581695995783.1301494-CDS-E-fasciculatus_F_contig1519:9960..10058Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1519 9961..10058 -
1622928000.2898657-CDS-E-fasciculatus_F_contig1519:10646..107381622928000.2898657-CDS-E-fasciculatus_F_contig1519:10646..10738Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1519 10647..10738 -
1695995783.138908-CDS-E-fasciculatus_F_contig1519:10646..107381695995783.138908-CDS-E-fasciculatus_F_contig1519:10646..10738Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1519 10647..10738 -
1622928000.3022335-CDS-E-fasciculatus_F_contig1519:11100..112091622928000.3022335-CDS-E-fasciculatus_F_contig1519:11100..11209Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1519 11101..11209 -
1695995783.149406-CDS-E-fasciculatus_F_contig1519:11100..112091695995783.149406-CDS-E-fasciculatus_F_contig1519:11100..11209Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1519 11101..11209 -
1622928000.3141294-CDS-E-fasciculatus_F_contig1519:11838..119951622928000.3141294-CDS-E-fasciculatus_F_contig1519:11838..11995Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1519 11839..11995 -
1695995783.15883-CDS-E-fasciculatus_F_contig1519:11838..119951695995783.15883-CDS-E-fasciculatus_F_contig1519:11838..11995Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1519 11839..11995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1519.3671.1

>prot_E-fasciculatus_F_contig1519.3671.1 ID=prot_E-fasciculatus_F_contig1519.3671.1|Name=mRNA_E-fasciculatus_F_contig1519.3671.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=230bp
MASTKDAPAGPVKRGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMR
FPDRTTPIGHMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRELLKAGT
TVVCDRYAYSGVAFSASKPVGLSVTWCKDPDRGLPAPDKILFLDISVEDA
MKRGQFGEERYEKEEFQRTVRATFLALMEEDKASGVAWQLIDAKREIGSI
QDEIQKIATSVVGEVEGKEIGSLWSRKED*
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mRNA from alignment at E-fasciculatus_F_contig1519:7917..12216-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1519.3671.1 ID=mRNA_E-fasciculatus_F_contig1519.3671.1|Name=mRNA_E-fasciculatus_F_contig1519.3671.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4300bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1519:7917..12216- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACGCACCAGGCTGAGATACGTTGATACCGAAGTCAACATTCTTCGAGCC ACCATCTCCATCACGGCGTTGCTGCTCGGCTGTCGAGTCTGCTTCGCGTC GGCGGCATTAGCACGACGAGTATCATCCCAATCACAATCACCAGTGCCAC CGACAGCGGCCTTCGTGGCACGAAGCAGCCGATCCTTGCCCACGGCAACC AGAACTGGGTCTGCTGCTACCATGGCGAGCACCAAAGACGCGCCTGCTGG GCCGGTGAAAAGGGGAGCGTTCATTCTGTTCGAGGGCGTGGATAGGTGCG GGAAAACAACGCAGGCGAACTTGTTGGTGGAGAGTCTCAAGCAGGCTGGT CACGACGCCTGCTTCATGCGCTTTCCCGGTGAGAGAGCTAACATTGACAC TCGACATTTGCACGTTGCTTGGCTGCCCCGAGGCATGCAAACACCCTCTT GTGAGAGATAGCTGTTAGAAACGGACAGTGGAATGAGGAGGTAGCATTGC GGCAAGCGAAGCTTAGTTTCAGATCTGATATCTACTCCGTAACAAATTCA AACCCATGGTATGGACACGAATGCTGCTTGTCTGTGTTGCTGCTGCTGTG TAGAGAACAACCCTTGGACTTGTATTCAAATTTTGAATCGCCGAGAGGCC CAGTTTGTTGGCGGCACCATGCGATCGGTGCATGGACTCGTTGTCTACCG CCGTGCGTGAACTGCTGTAGTACTGCAATACTGCTGTAGTCTACTGGTAC TGTATGCATAGGTTTCTGTTTCTCTGCCATACACCACGGGGTGGCGGTTA CACGAGTGAGGCGAAGAGCTTGCTTGCTTTGTGTTTGGGGACCACCCCGT ATCGCTACAGCAGCAGTCTGTCCCTCAGGAGTGCAGCAGAAATCGGTGGG AATCATGATCGTGCATGCTCGGGCTGTCAGAACCAGGCGAGATACGTACA ATACAGCGGGTGAAATCAACAGACTGGTGGTGCTGGTGATTCTCGTCTTC CATGCAGATCGAACAACGCCGATTGGACACATGATCAACGGCTTCCTGCA GAACACCACGGACATCGACGATCGCTGCGTGCACCTCCTCTTCTCTGCGA ATCGATGGGAAGCAGAGTGAGTTCTCGCCACCACGTTTTGGTGTGGAATT GGGCCCGGCTAAAGATATCGCACGGCGTAGACCATGTTCTGGGTGCGAGC TGGCAAATGACTAACTACTAGCTGTTCGTGATTGGGTTTGCGGCTCACAA TTTCTTGTCTAGAACCGTGAGCATCGTGTATTTTTCAACACTTCAGTGGT ACTTAGGAGTAGACCGTTCGCTGGCCACAAGAAGCAAACCGGCCTCGCCT GTACAAGGACTCGTTTCCAATTGGTACAAAGGACGTGATGCAGGTGTTCA ACTGCTGTGCGGGCGAGGCGGCAGCAGTCAGCATGCACCATCATGGCTGA CATGAGTCGTGCTTTTCGTCGTGGACAGATCGAAAATCCGAGAGCTGCTC AAGGCGGGTACTACCGTCGTGTGTGACCGGTACGCCTACAGCGGAGTCGC CTTTTCAGCTTCCAAACCCGGTGGGTTCTGGTTCTGGTGGTGTGGTCTGA GGTCTGTCTGGTGTTCATCTTGGAGTGTTGTGGCTTGGTTGTCGCTGCCG CCGGTTGTTATTGACTGGCCGTGCATTGCCACTTTTCGTAGATATAGCGC TTGATTTTTTTTCGCATGGTATCCTCACAGCAGCAGTAGTCTGTTCCCCG ATGCTATAATAGCATGACCGTTTTTGCCGCAGCCTTCCTTTATTCCACTT GCGTGCGAAGGCATCCGCGTCAGTTGGACCGATACGGGTGGTATACTGTA GGTACTGTAGGTACTGAGCAGCGACGGGAAAGGTTGAGGTTTCGAGTGTG AAGAAAACAATCACAACAACGCAGCGTTGCGTCTCTCCGACGTGAGTCCC CTTGTCCTGCACACTGCAGGTTTGAGAATGATAAGAGGTGCCGTCACGAA TGAATCACGCCTGTTTCCACCGCAGCGCTACCTACCCTCACCTCGATTAG AGGAATCCCTGACAAAGAACAACCGTACTTGTACCACACATTCGGTGCTG GGCAGTCACGCCAATGCTGCGTCGCCTCTGACTCCCTCACTGCTGTTGAC GTTTCGAGTAGGGCTATCGGTGACGTGGTGCAAAGACCCCGATCGGGGAC TCCCGGCGCCGGACAAGATACTTTTCCTTGACATCTCCGTAGAGGATGCC ATGAAGGTCCGTGCTAATCGCCTCCGTCGTAAGATACCAGTACCTCTTTG AGACAGTATGAGGTACTGATATTGTCGTTGTGTAGGGATGCCACAGACGT CCATTAGCTTCCTTCCTTCCCGGAGTCGTGCTTGACTTGCTACATCAGGA AGTAATGGTAATGGCAGCTGTCTCGCCATTGGTGTCTCATTAACTGCCCA GGGGTGCCACAAAGTATTCAGCGCATGGTGGAACAATTACTCAGTGACGT GCCCTACTTCGCTTTCAGAAACCACCCCCAACGCAGAATGTAAAAGACTC GGAGCATCTTGATCCGGCAGTAGCTGGTAGTATACCGGTATATGTTTCCA TCACCGCTAGCTCTGACAGCGACGCCCTAGCCTCCCCACTTTTTAATGGC TTCACTGCTTCTGCTGCTCATGAACCGCCTGACGGCTCATGAACTTGTGA TGACGATGCCGCAGCGAGGACAATTTGGGGAAGAGCGTTACGAGAAGGAG GAGTTCCAAAGAACAGTCCGAGCGACGTTCTTGGCTCTTATGGAAGAAGA CAAGGTGGGTATTCTTTGTATATCTATATCTTATCTTCCGTTCCCCAAGG ATCAATTGATTACTCTACTCTGATGAGCGTTTCGTACAGTAGAGTTGTTT GTTTCCGCCACGTTTTGTTCTCTTGGACCCAATGAAAGAGCGCAAGGTGT GCAGACTCGGTAGAATTTTGCGCTCTTCAGTAGAAAGTTGTTGTTGCTAA TCTCGATGCGTAGACTCGATGGGTTCTTCCATATTCAGCACGTGCAGGTA CCGAATGACGTTTCATATTGACACTCCTCGTGTATTCACGACGTGACCAT TTCTCCTCACTCTTCTCCACCGCGAATTCTGCCGACTTGCGTCGGCCCTG TAAACGCCGCGCCTCGCACTCTTCCCCACACCCCTGAGTGCGGATAGCGA TCTAACTGCTGTATACAGGTACTGCTGTCCGTTCTCCTCCTCACATCGGG CGCGGCGTCGAATATCCCAGCGGGTGTTCTGATCCCACTTTGTATACAGA TAGTCCTTCGTCGAAGCATGGGATACCACCCCCTGATAGATATTCTGATA TTCTTCCCCTGTTTTTTGCAGGTTAGAGATTAGACTATTGCCGAATTGCA TTATTGCATTATTGCTGAATTTCGGAACCCGATCCTGCCGCCAGCGCCCT TGCCGCTGCAGAATAATCGCTTTAAGCACCACCCACCGACGAGTTGATCG CGCTCCCAGTAGCTCGCGGGTGCATGTGCACGGGCGTTTCTTGTAGGAAA TAGATCCACGCTTGTAGAGACTGCAGTTCGTGTAAATACTCTATTCTTGG CGGCCCGTTGTTGTTGCCGCAGGCGTCGGGGGTGGCGTGGCAGCTGATTG ATGCCAAGCGGGAGATTGGGTCAATTCAAGACGAGATCCAGAAGATTGCC ACCTCGGTTGTGGGGGAAGTGGAGGGAAAGGAGATAGGCTCGCTGTGGTC TCGCAAGGAGGACTAGAATAAGAAAGTTGCGATAAAGTGCTGTGGTGGTT TGTGCGACCTCCTAGGACCGGCCAACGCATGGTTAAAGATTCAGCAGCAG TAACGGGGGGAGGGGTCCTGCACAGCTAGCACGGAAGCTGCATGATGATT TATGGTGCTGTGTCGTGGAAACGTTCGCATCATGAATTGCTAGTCGCGGT TGAAAGCGGTGCAGCTTTTGGTGGAGGAAATCCTCCATACCATAGCGCTT CCGTTTTGTGTGTAGTGTTCCAGGCGGGATTCAAGGTCGGTCCCCGTAGA ATGAGTCTTGTACCACTGCTGTATCATGCAGGCGACAGTCCAACGATTAG CCGTATAGCCATATACCAGTGGTACTTCTCCCCCCGTGTTGCTGAGCGCT TAATGCCCGTCCGTGCATGAATTACGCTTTGTAAAACGCCGCATCATACG AAACTGTGACGTGATGGTGTTGCATCTACTACCACCCACCGCCGTAAGCA CGCGCAGCTAGGCTATGCATATGATACTTCGCTTCAAAATGAAAACGAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1519:7917..12216-

>mRNA_E-fasciculatus_F_contig1519.3671.1 ID=mRNA_E-fasciculatus_F_contig1519.3671.1|Name=mRNA_E-fasciculatus_F_contig1519.3671.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1380bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1519:7917..12216- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGAGCACCAAAGACGCGCCTGCTGGGCCGGTGAAAAGGGGAGCGTT
CATTCTGTTCGAGGGCGTGGATAGGTGCGGGAAAACAACGCAGGCGAACT
TGTTGGTGGAGAGTCTCAAGCAGGCTGGTCACGACGCCTGCTTCATGCGC
TTTCCCGATGGCGAGCACCAAAGACGCGCCTGCTGGGCCGGTGAAAAGGG
GAGCGTTCATTCTGTTCGAGGGCGTGGATAGGTGCGGGAAAACAACGCAG
GCGAACTTGTTGGTGGAGAGTCTCAAGCAGGCTGGTCACGACGCCTGCTT
CATGCGCTTTCCCGATCGAACAACGCCGATTGGACACATGATCAACGGCT
TCCTGCAGAACACCACGGACATCGACGATCGCTGCGTGCACCTCCTCTTC
TCTGCGAATCGATGGGAAGCAGAATCGAACAACGCCGATTGGACACATGA
TCAACGGCTTCCTGCAGAACACCACGGACATCGACGATCGCTGCGTGCAC
CTCCTCTTCTCTGCGAATCGATGGGAAGCAGAATCGAAAATCCGAGAGCT
GCTCAAGGCGGGTACTACCGTCGTGTGTGACCGGTACGCCTACAGCGGAG
TCGCCTTTTCAGCTTCCAAACCCGATCGAAAATCCGAGAGCTGCTCAAGG
CGGGTACTACCGTCGTGTGTGACCGGTACGCCTACAGCGGAGTCGCCTTT
TCAGCTTCCAAACCCGTAGGGCTATCGGTGACGTGGTGCAAAGACCCCGA
TCGGGGACTCCCGGCGCCGGACAAGATACTTTTCCTTGACATCTCCGTAG
AGGATGCCATGAAGTAGGGCTATCGGTGACGTGGTGCAAAGACCCCGATC
GGGGACTCCCGGCGCCGGACAAGATACTTTTCCTTGACATCTCCGTAGAG
GATGCCATGAAGCGAGGACAATTTGGGGAAGAGCGTTACGAGAAGGAGGA
GTTCCAAAGAACAGTCCGAGCGACGTTCTTGGCTCTTATGGAAGAAGACA
AGCGAGGACAATTTGGGGAAGAGCGTTACGAGAAGGAGGAGTTCCAAAGA
ACAGTCCGAGCGACGTTCTTGGCTCTTATGGAAGAAGACAAGGCGTCGGG
GGTGGCGTGGCAGCTGATTGATGCCAAGCGGGAGATTGGGTCAATTCAAG
ACGAGATCCAGAAGATTGCCACCTCGGTTGTGGGGGAAGTGGAGGGAAAG
GAGATAGGCTCGCTGTGGTCTCGCAAGGAGGACTAGGCGTCGGGGGTGGC
GTGGCAGCTGATTGATGCCAAGCGGGAGATTGGGTCAATTCAAGACGAGA
TCCAGAAGATTGCCACCTCGGTTGTGGGGGAAGTGGAGGGAAAGGAGATA
GGCTCGCTGTGGTCTCGCAAGGAGGACTAG
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