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Homology
BLAST of mRNA_E-fasciculatus_F_contig1519.3670.1 vs. uniprot
Match: D7FSB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB9_ECTSI) HSP 1 Score: 419 bits (1078), Expect = 1.110e-138 Identity = 293/415 (70.60%), Postives = 305/415 (73.49%), Query Frame = 2
Query: 47 MEKSKLEVIQDDILAVKHALANNIAYEGLHGDQLTTVLSTLFSQRAQQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPQGNGATGTSRVPVNGSRAKAVSAKKKSPKKPTXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKHKPAPSPAQQK------EKPAAKKRKKSLGEVLRELRKSIKVGDFVSVLGDVLVRGTWEKVWIKGEVVREMNRSGIFQIAFDHDRQGQKSAVKKEPGSHGVDERWIHEQRLSIEHPDFFCGQGDSPPIGIDHLRPKGAWYLHQGQVVSPPDMCSRTPRLSDRSGSGDHSSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVSDPVAWNQSSLGSDSVHGASSVAAAAGQSGAAVSPASGFLDL 1273
MEKSKLEVIQDDILAVKHALANNIAYEGL GDQL TVLSTLFSQRAQQT XXXXXXXX PQGNG T SRVPVNGSRAKAVSAKK S KKP XXXXXXXXXXXX XXXX R+H PAP PAQ K EKP AKKRK S G VLRELRKS+KVGDFVSVLGDV +RGTWEKVW+KGEVVREMNRSGIFQIAFDHDRQGQ+SAVK EPGS+G DERW+HEQRLSIEHPDFFCGQGDSPPIGID+LRPKGAWYLHQGQ +SPPDMCSRTP LS+ S SG HSS XXXXXXXXXXXXXXXXXX DPVAWNQSSLGSDSVHGA+S AAAAGQS AV+PASGFLDL
Sbjct: 1 MEKSKLEVIQDDILAVKHALANNIAYEGLQGDQLKTVLSTLFSQRAQQTTEAATAXXXXXXXXGETASFAAAG----GPQGNGPTNMSRVPVNGSRAKAVSAKKSS-KKPANITTPAXXXXXXXXXXXX----XXXXDTQQTKEVADEETAPAKQAPPPKSKSPKRQHNPAPRPAQGKKQASTAEKPVAKKRKTSFGVVLRELRKSVKVGDFVSVLGDVSLRGTWEKVWVKGEVVREMNRSGIFQIAFDHDRQGQRSAVKTEPGSNGEDERWVHEQRLSIEHPDFFCGQGDSPPIGIDNLRPKGAWYLHQGQGISPPDMCSRTPHLSNGSDSGGHSSXXXXXXXXXXXXXXXXXXXX-----------------DPVAWNQSSLGSDSVHGANSEAAAAGQSDPAVTPASGFLDL 389
BLAST of mRNA_E-fasciculatus_F_contig1519.3670.1 vs. uniprot
Match: A0A6H5KF34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF34_9PHAE) HSP 1 Score: 105 bits (263), Expect = 4.690e-23 Identity = 85/151 (56.29%), Postives = 88/151 (58.28%), Query Frame = 2
Query: 308 SRVPVNGSRAKAVSAKKKSPKKPTXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKHKPAPSPAQQK------EKPAAKKRKKSLGEVLRELRKSIKVGDFVSVLGDVLVRGTWEKVWIKGEVVREM 742
SRVPVNGSRAKAVSAKK S KKP XXXXXXXX R+H PAP PAQ K EKP AKKRK S G VLRELRKSIKVGDFVSVLGDV +RG+WEKVWIKGEVVREM
Sbjct: 2 SRVPVNGSRAKAVSAKKSS-KKPANITTQAATSEXXXXXXXX-----AASIDTQQTKDVADEETAPAKQAPPPSKSLKRQHNPAPRPAQGKKQVSTAEKPVAKKRKTSFGVVLRELRKSIKVGDFVSVLGDVSLRGSWEKVWIKGEVVREM 146
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-20_004940.1 |
| Exons | 2 |
| Model size | 1971 |
| Cds size | 1230 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1519.3670.1 >prot_E-fasciculatus_F_contig1519.3670.1 ID=prot_E-fasciculatus_F_contig1519.3670.1|Name=mRNA_E-fasciculatus_F_contig1519.3670.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=410bp
MEKSKLEVIQDDILAVKHALANNIAYEGLHGDQLTTVLSTLFSQRAQQTV AAAAAAATTSGGSGGSEPASFAAAAAASPQGNGATGTSRVPVNGSRAKAV SAKKKSPKKPTSTTTPATTSDPANDDQSTPTAASTDTPKTQTEQTKDKEA TPNKKAPPPKSKPPKRKHKPAPSPAQQKEKPAAKKRKKSLGEVLRELRKS IKVGDFVSVLGDVLVRGTWEKVWIKGEVVREMNRSGIFQIAFDHDRQGQK SAVKKEPGSHGVDERWIHEQRLSIEHPDFFCGQGDSPPIGIDHLRPKGAW YLHQGQVVSPPDMCSRTPRLSDRSGSGDHSSSSTDSSSSVGSSSSSPATA TAAATAPQPAPQPAPPVSDPVAWNQSSLGSDSVHGASSVAAAAGQSGAAV SPASGFLDL* back to topmRNA from alignment at E-fasciculatus_F_contig1519:3841..7396- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1519.3670.1 ID=mRNA_E-fasciculatus_F_contig1519.3670.1|Name=mRNA_E-fasciculatus_F_contig1519.3670.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3556bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1519:3841..7396- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) CCGCTCGCCGCTTGCACATGTGTTATCTGTCAAAGTAGGGGATGCAATGG
AGAAGTCTAAGCTCGAGGTGATCCAGGATGACATCCTGGCCGTAAAGCAT
GCTTTGGCGAACAACATCGCGTATGAAGGTCTCCACGGCGACCAACTCAC
AACGGTGCTATCGACCCTCTTCAGTCAGAGAGCCCAGCAAACTGTTGCAG
CGGCTGCCGCAGCAGCAACGACCAGCGGTGGAAGTGGCGGCAGCGAACCT
GCGAGCTTCGCTGCTGCTGCTGCTGCTAGTCCCCAAGGCAACGGCGCTAC
CGGCACGTCACGAGTTCCTGTCAACGGCTCCCGGGCGAAGGCTGTGTCAG
CTAAGAAGAAGAGCCCGAAGAAGCCCACCAGCACAACAACACCGGCCACC
ACAAGCGACCCAGCCAATGATGACCAGAGCACGCCGACAGCGGCCAGCAC
GGATACTCCAAAGACTCAGACTGAGCAGACCAAAGACAAAGAAGCCACCC
CCAACAAGAAGGCCCCGCCGCCCAAGAGCAAGCCACCCAAGCGGAAGCAT
AAGCCCGCCCCGTCGCCTGCGCAGCAGAAGGAGAAGCCGGCGGCGAAGAA
GAGGAAGAAAAGCTTGGGCGAAGTCTTGCGGGAGCTTCGAAAGAGCATCA
AGGTCGGAGACTTCGTGTCTGTGTTGGGGGACGTGCTTGTGAGAGGCACT
TGGGAGAAGGTGTGGATCAAGGGCGAGGTCGTGCGCGAGGTGAGCCAGCG
GCAACAGAGTCTTCACCCTGGTGCTAACCTGGTACTACTTTTGTCATGAT
GAAATGATGATGTAGTGGATTGTCCATCTCACGGGAGTGCCAAGTAGTGT
GGAGGAGGAGGTGCGGGGCAACTTGCAACTTTGCTCTCATTCCGCGGGTG
GCGAGTCGTATTTTAGTCGTCCTATACATGTGCTATGCTATCGTACATGA
CACGTGGTACTCAGCCTGTGTGGGTACATTCTTGTAGTTGATGGGCGGCA
ACAAGTGGCTTAAGTGCATGGCCTAAAGTGAACGAATTGACTCATTACCA
TACCATTTTTGGTCATGTACGAGGTGTGAACGATTTGTGTTTGAATTTTT
TCCGGGACTACCCCCGCTCACTCTTTTACTCCCAAACTATGTATGTAGTA
TTGTACTAAATAATGCATACATCTCGTATGAGCGTACTACAGCAAGTGCA
CATGATATAAGTTTCAGAGCTTTGAAGCACTCTGTTGAAGCAGTCGATAT
TTGATCCCAAGAGTTTTTTATGTCCTCGCACGAGCTTGATGCTGGACGAA
CAGCGTTTGTTTGATCCCTCTCTGGAAAATCAATGAGAGCAAGAGCAAGA
GCAACAGACACGCCAAGCGAGATGGAAGACGACATTGAGCACTCGCAACT
CACAACACGCCATCTCCTTGGCAATCAATCACAACATGACATTTTTCAAA
AGTGGTGGCCACCGGTGTTCCTCTCACGCCATTCCTTATGGGACACAGAC
ATGAAACAGAGAAACAGGATATTGCGATATTGCGATCTTGCGATATTGCG
ATCTTGAGAGTTCCTGTTTGTTAGGGTTGAGAGATTCCCTACGGCCGAAG
ATGTTTATGAATGATTCGTTGTCTCGTCACGCGGCAGTGCCTCGTAACAT
GACCACTCGACTTTGTCGTTTGGGCGTCGGAAGAATCGCGTGCCGGTTAC
CGGGTGGCACGATGCGCCACAAAAGCATGCGCTCCTCGTGAGTTGTCGAG
AGACAATGTTGTAGAGCAGGCGAGTTTCTTGAAACTCTTGGGATGGAAGG
AGCACCAGCAATTGTGAAGAAATGACTTACGAGCGAGTGCGCACTCTTTT
TGTCGCAGTTCGTTTTCCCCTTGGCTCATTGTGCAGCACCCTGCTTATTC
TCTGCTTCCACCAAACCATTTTATTTCATTTCCGTGTTTCGTGTTCATCA
CGATCCGAATCCAGTTGCCGGACGCGCAAGAACCGTGAAATGTGTTTCCT
CTCTCCCAGTCCAATTGCGGTTTCGGTGTCGTCTCCGCAGAAAGCAAAGT
AGAACCGGTGGCCACATGCAGCACACCGAACGCGCGCTCTTGTATCAAGC
AGCAGTTTGCTTGGTTTTGAGATAACGTGTGCGTTTTTGTCCTACAGTAC
CGTGAGCGACGACTAAGAGTTTTGAATCAATCCACCGTTATATCACTGAT
GTTTCATCCTCGCATTCTATCAGCGACACACGATCGCTGTTGTTGCCCCC
ATGACCCCGATGTGTGGATTCTAACACATGAGGATCTTCGTCTACCCCAC
CAATCAACCGTGTCCGTCGGGCAGATGAACCGCAGCGGGATCTTTCAAAT
CGCGTTCGATCATGACCGGCAAGGGCAAAAGAGCGCCGTAAAGAAGGAGC
CGGGTAGTCACGGGGTGGATGAGAGGTGGATCCACGAGCAGAGGCTGTCG
ATCGAGCACCCGGACTTCTTTTGCGGTCAGGGAGACTCGCCGCCGATCGG
CATCGACCACTTGCGCCCGAAGGGAGCGTGGTACCTTCACCAGGGGCAGG
TGGTATCGCCGCCCGACATGTGCAGTCGTACACCCCGTTTGAGCGATCGT
AGCGGCAGCGGTGATCACAGCAGCAGCAGCACTGACAGCAGCAGCAGCGT
TGGCAGCAGCAGCAGCAGCCCGGCCACGGCTACGGCTGCAGCGACTGCGC
CGCAACCGGCGCCGCAACCGGCGCCGCCCGTTTCGGATCCTGTTGCTTGG
AATCAATCCTCGCTCGGCTCGGACAGTGTACATGGCGCCAGCAGTGTGGC
GGCTGCAGCGGGGCAAAGCGGGGCCGCAGTAAGTCCAGCAAGTGGCTTCC
TTGACCTTTGATCGCCGCTCGCGTTTCAGCGTCACTTGTCGTGCACGTCC
TTTCGAGACAATCGGAGTTCGCTGTCAGTTTTTTGTTGGCTGTTGCGGGT
ACAGGTCTTGAAGCCCTATGTTACTATGAAGGATGAAGGTTAGGCGGACC
ACGAGTAAACCATGAATGACGTTGTCTGTTTCCGTTTTTGCCGTGGGTGT
TGCTTTGGTCACGCCTGCCGTAGTTGTTGAGTGTTCGAACGTTAGGTTGT
TTTCTAGATGAGACAACCCGAAGTTGAGCGAGGCGCAGTTGCCCGGTTGC
CAACACCGCGTTGACTTTTGCCTCGTATTGGGGCGGAATACACTTGGAAC
GGGTTCATGGGCTCTCTGCCGGGGTTGTAGTGCAGGACAGAATGTGTACA
TAGGTCCAAAACTTGGTGGCATTTCGTGCGTGCTTGTCATCAGTTTGTTG
GCCGAGGCATTACGCGCGAAACGATTGGTTCGACTGGAAGCACTACATAG
CAAGACCTCGATGGCAAGTCCTCGATACCTGTATGGACCTTTCATGTGGA
TAGTATTGTCACCATGTGTACGTTTTCGTTTTCGTCCGGTAGACGGCTGT
GTGATAGCAAATCGGTCCTGCCGCTTCCAACGCCGAGAATGCACACCACG
GGTTCTCAATATTAGAGATAGATGCGACAAAAAATGTCTGAATTGACCTC
TGCTGG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1519:3841..7396- >mRNA_E-fasciculatus_F_contig1519.3670.1 ID=mRNA_E-fasciculatus_F_contig1519.3670.1|Name=mRNA_E-fasciculatus_F_contig1519.3670.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2460bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1519:3841..7396- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGGAGAAGTCTAAGCTCGAGGTGATCCAGGATGACATCCTGGCCGTAAA GCATGCTTTGGCGAACAACATCGCGTATGAAGGTCTCCACGGCGACCAAC TCACAACGGTGCTATCGACCCTCTTCAGTCAGAGAGCCCAGCAAACTGTT GCAGCGGCTGCCGCAGCAGCAACGACCAGCGGTGGAAGTGGCGGCAGCGA ACCTGCGAGCTTCGCTGCTGCTGCTGCTGCTAGTCCCCAAGGCAACGGCG CTACCGGCACGTCACGAGTTCCTGTCAACGGCTCCCGGGCGAAGGCTGTG TCAGCTAAGAAGAAGAGCCCGAAGAAGCCCACCAGCACAACAACACCGGC CACCACAAGCGACCCAGCCAATGATGACCAGAGCACGCCGACAGCGGCCA GCACGGATACTCCAAAGACTCAGACTGAGCAGACCAAAGACAAAGAAGCC ACCCCCAACAAGAAGGCCCCGCCGCCCAAGAGCAAGCCACCCAAGCGGAA GCATAAGCCCGCCCCGTCGCCTGCGCAGCAGAAGGAGAAGCCGGCGGCGA AGAAGAGGAAGAAAAGCTTGGGCGAAGTCTTGCGGGAGCTTCGAAAGAGC ATCAAGGTCGGAGACTTCGTGTCTGTGTTGGGGGACGTGCTTGTGAGAGG CACTTGGGAGAAGGTGTGGATCAAGGGCGAGGTCGTGCGCGAGATGGAGA AGTCTAAGCTCGAGGTGATCCAGGATGACATCCTGGCCGTAAAGCATGCT TTGGCGAACAACATCGCGTATGAAGGTCTCCACGGCGACCAACTCACAAC GGTGCTATCGACCCTCTTCAGTCAGAGAGCCCAGCAAACTGTTGCAGCGG CTGCCGCAGCAGCAACGACCAGCGGTGGAAGTGGCGGCAGCGAACCTGCG AGCTTCGCTGCTGCTGCTGCTGCTAGTCCCCAAGGCAACGGCGCTACCGG CACGTCACGAGTTCCTGTCAACGGCTCCCGGGCGAAGGCTGTGTCAGCTA AGAAGAAGAGCCCGAAGAAGCCCACCAGCACAACAACACCGGCCACCACA AGCGACCCAGCCAATGATGACCAGAGCACGCCGACAGCGGCCAGCACGGA TACTCCAAAGACTCAGACTGAGCAGACCAAAGACAAAGAAGCCACCCCCA ACAAGAAGGCCCCGCCGCCCAAGAGCAAGCCACCCAAGCGGAAGCATAAG CCCGCCCCGTCGCCTGCGCAGCAGAAGGAGAAGCCGGCGGCGAAGAAGAG GAAGAAAAGCTTGGGCGAAGTCTTGCGGGAGCTTCGAAAGAGCATCAAGG TCGGAGACTTCGTGTCTGTGTTGGGGGACGTGCTTGTGAGAGGCACTTGG GAGAAGGTGTGGATCAAGGGCGAGGTCGTGCGCGAGATGAACCGCAGCGG GATCTTTCAAATCGCGTTCGATCATGACCGGCAAGGGCAAAAGAGCGCCG TAAAGAAGGAGCCGGGTAGTCACGGGGTGGATGAGAGGTGGATCCACGAG CAGAGGCTGTCGATCGAGCACCCGGACTTCTTTTGCGGTCAGGGAGACTC GCCGCCGATCGGCATCGACCACTTGCGCCCGAAGGGAGCGTGGTACCTTC ACCAGGGGCAGGTGGTATCGCCGCCCGACATGTGCAGTCGTACACCCCGT TTGAGCGATCGTAGCGGCAGCGGTGATCACAGCAGCAGCAGCACTGACAG CAGCAGCAGCGTTGGCAGCAGCAGCAGCAGCCCGGCCACGGCTACGGCTG CAGCGACTGCGCCGCAACCGGCGCCGCAACCGGCGCCGCCCGTTTCGGAT CCTGTTGCTTGGAATCAATCCTCGCTCGGCTCGGACAGTGTACATGGCGC CAGCAGTGTGGCGGCTGCAGCGGGGCAAAGCGGGGCCGCAGTAAGTCCAG CAAGTGGCTTCCTTGACCTTTGAATGAACCGCAGCGGGATCTTTCAAATC GCGTTCGATCATGACCGGCAAGGGCAAAAGAGCGCCGTAAAGAAGGAGCC GGGTAGTCACGGGGTGGATGAGAGGTGGATCCACGAGCAGAGGCTGTCGA TCGAGCACCCGGACTTCTTTTGCGGTCAGGGAGACTCGCCGCCGATCGGC ATCGACCACTTGCGCCCGAAGGGAGCGTGGTACCTTCACCAGGGGCAGGT GGTATCGCCGCCCGACATGTGCAGTCGTACACCCCGTTTGAGCGATCGTA GCGGCAGCGGTGATCACAGCAGCAGCAGCACTGACAGCAGCAGCAGCGTT GGCAGCAGCAGCAGCAGCCCGGCCACGGCTACGGCTGCAGCGACTGCGCC GCAACCGGCGCCGCAACCGGCGCCGCCCGTTTCGGATCCTGTTGCTTGGA ATCAATCCTCGCTCGGCTCGGACAGTGTACATGGCGCCAGCAGTGTGGCG GCTGCAGCGGGGCAAAGCGGGGCCGCAGTAAGTCCAGCAAGTGGCTTCCT TGACCTTTGA back to top
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